ribonuclease H protein At1g65750-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 50 - 89 | 8.8e-06 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 58 |
| AgsI | TTSAA | 2 cut(s) | 185, 224 |
| AluBI | AGCT | 3 cut(s) | 46, 160, 313 |
| AluI | AGCT | 3 cut(s) | 46, 160, 313 |
| Ama87I | CYCGRG | 1 cut(s) | 47 |
| AoxI | GGCC | 1 cut(s) | 189 |
| ApeKI | GCWGC | 2 cut(s) | 43, 160 |
| AvaI | CYCGRG | 1 cut(s) | 47 |
| BanII | GRGCYC | 1 cut(s) | 55 |
| BauI | CACGAG | 1 cut(s) | 56 |
| BbvI | GCAGC | 2 cut(s) | 55, 147 |
| BccI | CCATC | 1 cut(s) | 31 |
| BfuAI | ACCTGC | 1 cut(s) | 58 |
| BisI | GCNGC | 2 cut(s) | 44, 161 |
| BlsI | GCNGC | 2 cut(s) | 45, 162 |
| BmeT110I | CYCGRG | 1 cut(s) | 47 |
| BplI | GAGNNNNNCTC | 1 cut(s) | 302 |
| BsaJI | CCNNGG | 1 cut(s) | 278 |
| BsaWI | WCCGGW | 1 cut(s) | 296 |
| BseDI | CCNNGG | 1 cut(s) | 278 |
| BseGI | GGATG | 1 cut(s) | 277 |
| BseXI | GCAGC | 2 cut(s) | 55, 147 |
| BsgI | GTGCAG | 1 cut(s) | 62 |
| BshFI | GGCC | 1 cut(s) | 191 |
| BsiHKCI | CYCGRG | 1 cut(s) | 47 |
| BsiSI | CCGG | 1 cut(s) | 297 |
| BsnI | GGCC | 1 cut(s) | 191 |
| BsoBI | CYCGRG | 1 cut(s) | 47 |
| Bsp1286I | GDGCHC | 1 cut(s) | 55 |
| Bsp143I | GATC | 2 cut(s) | 26, 90 |
| Bsp19I | CCATGG | 1 cut(s) | 278 |
| BspANI | GGCC | 1 cut(s) | 191 |
| BspMI | ACCTGC | 1 cut(s) | 58 |
| BssECI | CCNNGG | 1 cut(s) | 278 |
| BssMI | GATC | 2 cut(s) | 26, 90 |
| BssSI | CACGAG | 1 cut(s) | 56 |
| BssT1I | CCWWGG | 1 cut(s) | 278 |
| Bst2BI | CACGAG | 1 cut(s) | 56 |
| Bst4CI | ACNGT | 1 cut(s) | 294 |
| BstDEI | CTNAG | 1 cut(s) | 87 |
| BstDSI | CCRYGG | 1 cut(s) | 278 |
| BstF5I | GGATG | 1 cut(s) | 277 |
| BstKTI | GATC | 2 cut(s) | 29, 93 |
| BstMBI | GATC | 2 cut(s) | 26, 90 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 319 |
| BstV1I | GCAGC | 2 cut(s) | 55, 147 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 187 |
| BsuRI | GGCC | 1 cut(s) | 191 |
| BtgI | CCRYGG | 1 cut(s) | 278 |
| BtsCI | GGATG | 1 cut(s) | 277 |
| BveI | ACCTGC | 1 cut(s) | 58 |
| CviAII | CATG | 2 cut(s) | 176, 279 |
| CviJI | RGCY | 5 cut(s) | 46, 53, 160, 191, 313 |
| CviKI_1 | RGCY | 5 cut(s) | 46, 53, 160, 191, 313 |
| DdeI | CTNAG | 1 cut(s) | 87 |
| DpnI | GATC | 2 cut(s) | 28, 92 |
| DpnII | GATC | 2 cut(s) | 26, 90 |
| Eco130I | CCWWGG | 1 cut(s) | 278 |
| Eco24I | GRGCYC | 1 cut(s) | 55 |
| Eco88I | CYCGRG | 1 cut(s) | 47 |
| EcoT14I | CCWWGG | 1 cut(s) | 278 |
| EcoT38I | GRGCYC | 1 cut(s) | 55 |
| ErhI | CCWWGG | 1 cut(s) | 278 |
| FaeI | CATG | 2 cut(s) | 179, 282 |
| FaiI | YATR | 2 cut(s) | 177, 280 |
| FatI | CATG | 2 cut(s) | 175, 278 |
| Fnu4HI | GCNGC | 2 cut(s) | 44, 161 |
| FokI | GGATG | 1 cut(s) | 284 |
| FriOI | GRGCYC | 1 cut(s) | 55 |
| Fsp4HI | GCNGC | 2 cut(s) | 44, 161 |
| GluI | GCNGC | 2 cut(s) | 44, 161 |
| HaeIII | GGCC | 1 cut(s) | 191 |
| HapII | CCGG | 1 cut(s) | 297 |
| Hin1II | CATG | 2 cut(s) | 179, 282 |
| HinfI | GANTC | 2 cut(s) | 230, 244 |
| HpaII | CCGG | 1 cut(s) | 297 |
| Hpy166II | GTNNAC | 1 cut(s) | 287 |
| Hpy188III | TCNNGA | 2 cut(s) | 24, 58 |
| Hpy8I | GTNNAC | 1 cut(s) | 287 |
| HpyCH4III | ACNGT | 1 cut(s) | 294 |
| HpyCH4V | TGCA | 1 cut(s) | 43 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 319 |
| HpyF3I | CTNAG | 1 cut(s) | 87 |
| Hsp92II | CATG | 2 cut(s) | 179, 282 |
| Kzo9I | GATC | 2 cut(s) | 26, 90 |
| LpnPI | CCDG | 3 cut(s) | 53, 107, 310 |
| Lsp1109I | GCAGC | 2 cut(s) | 55, 147 |
| MalI | GATC | 2 cut(s) | 28, 92 |
| MboI | GATC | 2 cut(s) | 26, 90 |
| MfeI | CAATTG | 1 cut(s) | 185 |
| MhlI | GDGCHC | 1 cut(s) | 55 |
| MluCI | AATT | 3 cut(s) | 185, 213, 303 |
| MnlI | CCTC | 2 cut(s) | 18, 194 |
| MseI | TTAA | 3 cut(s) | 212, 264, 302 |
| MspI | CCGG | 1 cut(s) | 297 |
| MunI | CAATTG | 1 cut(s) | 185 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 319 |
| NcoI | CCATGG | 1 cut(s) | 278 |
| NdeII | GATC | 2 cut(s) | 26, 90 |
| NlaIII | CATG | 2 cut(s) | 179, 282 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 54 |
| PfeI | GAWTC | 2 cut(s) | 230, 244 |
| PkrI | GCNGC | 2 cut(s) | 45, 162 |
| SaqAI | TTAA | 3 cut(s) | 212, 264, 302 |
| SatI | GCNGC | 2 cut(s) | 44, 161 |
| Sau3AI | GATC | 2 cut(s) | 26, 90 |
| SduI | GDGCHC | 1 cut(s) | 55 |
| SetI | ASST | 5 cut(s) | 48, 72, 162, 205, 315 |
| Sse9I | AATT | 3 cut(s) | 185, 213, 303 |
| StyI | CCWWGG | 1 cut(s) | 278 |
| TaaI | ACNGT | 1 cut(s) | 294 |
| TaqI | TCGA | 1 cut(s) | 309 |
| TasI | AATT | 3 cut(s) | 185, 213, 303 |
| TfiI | GAWTC | 2 cut(s) | 230, 244 |
| Tru1I | TTAA | 3 cut(s) | 212, 264, 302 |
| Tru9I | TTAA | 3 cut(s) | 212, 264, 302 |
| TseI | GCWGC | 2 cut(s) | 43, 160 |
| TspDTI | ATGAA | 3 cut(s) | 164, 236, 246 |