ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 32, 383 |
| AclI | AACGTT | 1 cut(s) | 290 |
| AcoI | YGGCCR | 1 cut(s) | 38 |
| AfaI | GTAC | 2 cut(s) | 17, 511 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 398 |
| AgsI | TTSAA | 2 cut(s) | 274, 370 |
| AjnI | CCWGG | 1 cut(s) | 40 |
| AleI | CACNNNNGTG | 1 cut(s) | 170 |
| AluBI | AGCT | 3 cut(s) | 55, 163, 341 |
| AluI | AGCT | 3 cut(s) | 55, 163, 341 |
| AoxI | GGCC | 3 cut(s) | 38, 59, 326 |
| ApeKI | GCWGC | 2 cut(s) | 433, 478 |
| AseI | ATTAAT | 1 cut(s) | 111 |
| AspS9I | GGNCC | 2 cut(s) | 60, 327 |
| AsuC2I | CCSGG | 1 cut(s) | 260 |
| AsuHPI | GGTGA | 1 cut(s) | 372 |
| BalI | TGGCCA | 1 cut(s) | 40 |
| BauI | CACGAG | 1 cut(s) | 355 |
| BbvI | GCAGC | 2 cut(s) | 445, 465 |
| BccI | CCATC | 1 cut(s) | 92 |
| BciT130I | CCWGG | 1 cut(s) | 42 |
| BcnI | CCSGG | 1 cut(s) | 260 |
| BfaI | CTAG | 1 cut(s) | 526 |
| BisI | GCNGC | 2 cut(s) | 434, 479 |
| BlsI | GCNGC | 2 cut(s) | 435, 480 |
| BmcAI | AGTACT | 1 cut(s) | 17 |
| Bme1390I | CCNGG | 2 cut(s) | 42, 260 |
| BmgT120I | GGNCC | 2 cut(s) | 60, 327 |
| BmrFI | CCNGG | 2 cut(s) | 42, 260 |
| BmsI | GCATC | 1 cut(s) | 352 |
| BpuMI | CCSGG | 1 cut(s) | 260 |
| BsaAI | YACGTR | 1 cut(s) | 440 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 303, 333 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 398 |
| Bse1I | ACTGG | 1 cut(s) | 170 |
| Bse3DI | GCAATG | 2 cut(s) | 230, 264 |
| BseBI | CCWGG | 1 cut(s) | 42 |
| BseGI | GGATG | 2 cut(s) | 103, 367 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 398 |
| BseMI | GCAATG | 2 cut(s) | 230, 264 |
| BseMII | CTCAG | 1 cut(s) | 61 |
| BseNI | ACTGG | 1 cut(s) | 170 |
| BseXI | GCAGC | 2 cut(s) | 445, 465 |
| BseYI | CCCAGC | 1 cut(s) | 337 |
| BshFI | GGCC | 3 cut(s) | 40, 61, 328 |
| BsiSI | CCGG | 1 cut(s) | 260 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 398 |
| BsnI | GGCC | 3 cut(s) | 40, 61, 328 |
| Bsp143I | GATC | 2 cut(s) | 26, 313 |
| BspACI | CCGC | 2 cut(s) | 32, 383 |
| BspANI | GGCC | 3 cut(s) | 40, 61, 328 |
| BspCNI | CTCAG | 1 cut(s) | 60 |
| BsrDI | GCAATG | 2 cut(s) | 230, 264 |
| BsrI | ACTGG | 1 cut(s) | 170 |
| BssMI | GATC | 2 cut(s) | 26, 313 |
| BssSI | CACGAG | 1 cut(s) | 355 |
| Bst2BI | CACGAG | 1 cut(s) | 355 |
| Bst2UI | CCWGG | 1 cut(s) | 42 |
| Bst4CI | ACNGT | 1 cut(s) | 348 |
| BstBAI | YACGTR | 1 cut(s) | 440 |
| BstDEI | CTNAG | 1 cut(s) | 47 |
| BstF5I | GGATG | 2 cut(s) | 103, 367 |
| BstKTI | GATC | 2 cut(s) | 29, 316 |
| BstMBI | GATC | 2 cut(s) | 26, 313 |
| BstNI | CCWGG | 1 cut(s) | 42 |
| BstSCI | CCNGG | 2 cut(s) | 40, 258 |
| BstV1I | GCAGC | 2 cut(s) | 445, 465 |
| BsuRI | GGCC | 3 cut(s) | 40, 61, 328 |
| BtsCI | GGATG | 2 cut(s) | 103, 367 |
| BtsIMutI | CAGTG | 1 cut(s) | 177 |
| Cfr13I | GGNCC | 2 cut(s) | 60, 327 |
| Csp6I | GTAC | 2 cut(s) | 16, 510 |
| CviAII | CATG | 1 cut(s) | 187 |
| CviJI | RGCY | 9 cut(s) | 40, 55, 61, 163, 328, 341, 428, 436, 478 |
| CviKI_1 | RGCY | 9 cut(s) | 40, 55, 61, 163, 328, 341, 428, 436, 478 |
| CviQI | GTAC | 2 cut(s) | 16, 510 |
| DdeI | CTNAG | 1 cut(s) | 47 |
| DpnI | GATC | 2 cut(s) | 28, 315 |
| DpnII | GATC | 2 cut(s) | 26, 313 |
| EaeI | YGGCCR | 1 cut(s) | 38 |
| EcoRII | CCWGG | 1 cut(s) | 40 |
| FaeI | CATG | 1 cut(s) | 190 |
| FaiI | YATR | 6 cut(s) | 188, 212, 423, 467, 469, 471 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 496, 528 |
| FatI | CATG | 1 cut(s) | 186 |
| Fnu4HI | GCNGC | 2 cut(s) | 434, 479 |
| FokI | GGATG | 2 cut(s) | 110, 374 |
| Fsp4HI | GCNGC | 2 cut(s) | 434, 479 |
| FspBI | CTAG | 1 cut(s) | 526 |
| GluI | GCNGC | 2 cut(s) | 434, 479 |
| GsaI | CCCAGC | 1 cut(s) | 341 |
| HaeIII | GGCC | 3 cut(s) | 40, 61, 328 |
| HapII | CCGG | 1 cut(s) | 260 |
| Hin1II | CATG | 1 cut(s) | 190 |
| HincII | GTYRAC | 1 cut(s) | 351 |
| HindII | GTYRAC | 1 cut(s) | 351 |
| HindIII | AAGCTT | 1 cut(s) | 53 |
| HinfI | GANTC | 2 cut(s) | 45, 277 |
| HpaII | CCGG | 1 cut(s) | 260 |
| HphI | GGTGA | 1 cut(s) | 372 |
| Hpy166II | GTNNAC | 1 cut(s) | 351 |
| Hpy188I | TCNGA | 5 cut(s) | 24, 50, 124, 248, 311 |
| Hpy8I | GTNNAC | 1 cut(s) | 351 |
| HpyAV | CCTTC | 2 cut(s) | 193, 246 |
| HpyCH4III | ACNGT | 1 cut(s) | 348 |
| HpyCH4IV | ACGT | 2 cut(s) | 290, 439 |
| HpyCH4V | TGCA | 2 cut(s) | 4, 433 |
| HpyF3I | CTNAG | 1 cut(s) | 47 |
| HpySE526I | ACGT | 2 cut(s) | 290, 439 |
| Hsp92II | CATG | 1 cut(s) | 190 |
| Kzo9I | GATC | 2 cut(s) | 26, 313 |
| LmnI | GCTCC | 1 cut(s) | 527 |
| LpnPI | CCDG | 6 cut(s) | 27, 54, 183, 273, 327, 351 |
| Lsp1109I | GCAGC | 2 cut(s) | 445, 465 |
| LweI | GCATC | 1 cut(s) | 352 |
| MaeI | CTAG | 1 cut(s) | 526 |
| MaeII | ACGT | 2 cut(s) | 290, 439 |
| MaeIII | GTNAC | 1 cut(s) | 174 |
| MalI | GATC | 2 cut(s) | 28, 315 |
| MboI | GATC | 2 cut(s) | 26, 313 |
| MboII | GAAGA | 3 cut(s) | 247, 286, 314 |
| MfeI | CAATTG | 2 cut(s) | 127, 393 |
| MlsI | TGGCCA | 1 cut(s) | 40 |
| MluCI | AATT | 4 cut(s) | 112, 127, 321, 393 |
| MluNI | TGGCCA | 1 cut(s) | 40 |
| MlyI | GAGTC | 1 cut(s) | 39 |
| MmeI | TCCRAC | 2 cut(s) | 289, 383 |
| MnlI | CCTC | 3 cut(s) | 351, 468, 500 |
| Mox20I | TGGCCA | 1 cut(s) | 40 |
| MscI | TGGCCA | 1 cut(s) | 40 |
| MseI | TTAA | 4 cut(s) | 75, 111, 216, 282 |
| MslI | CAYNNNNRTG | 1 cut(s) | 170 |
| Msp20I | TGGCCA | 1 cut(s) | 40 |
| MspA1I | CMGCKG | 2 cut(s) | 32, 341 |
| MspI | CCGG | 1 cut(s) | 260 |
| MspR9I | CCNGG | 2 cut(s) | 42, 260 |
| MunI | CAATTG | 2 cut(s) | 127, 393 |
| MvaI | CCWGG | 1 cut(s) | 42 |
| NciI | CCSGG | 1 cut(s) | 260 |
| NdeII | GATC | 2 cut(s) | 26, 313 |
| NlaIII | CATG | 1 cut(s) | 190 |
| OliI | CACNNNNGTG | 1 cut(s) | 170 |
| PfeI | GAWTC | 1 cut(s) | 277 |
| PfoI | TCCNGGA | 1 cut(s) | 258 |
| PkrI | GCNGC | 2 cut(s) | 435, 480 |
| PleI | GAGTC | 1 cut(s) | 39 |
| PpsI | GAGTC | 1 cut(s) | 39 |
| Ppu21I | YACGTR | 1 cut(s) | 440 |
| PshBI | ATTAAT | 1 cut(s) | 111 |
| Psp1406I | AACGTT | 1 cut(s) | 290 |
| Psp6I | CCWGG | 1 cut(s) | 40 |
| PspFI | CCCAGC | 1 cut(s) | 337 |
| PspGI | CCWGG | 1 cut(s) | 40 |
| PspPI | GGNCC | 2 cut(s) | 60, 327 |
| PvuII | CAGCTG | 1 cut(s) | 341 |
| RsaI | GTAC | 2 cut(s) | 17, 511 |
| RsaNI | GTAC | 2 cut(s) | 16, 510 |
| RseI | CAYNNNNRTG | 1 cut(s) | 170 |
| SaqAI | TTAA | 4 cut(s) | 75, 111, 216, 282 |
| SatI | GCNGC | 2 cut(s) | 434, 479 |
| Sau3AI | GATC | 2 cut(s) | 26, 313 |
| Sau96I | GGNCC | 2 cut(s) | 60, 327 |
| ScaI | AGTACT | 1 cut(s) | 17 |
| SchI | GAGTC | 1 cut(s) | 39 |
| ScrFI | CCNGG | 2 cut(s) | 42, 260 |
| SetI | ASST | 9 cut(s) | 11, 57, 165, 201, 238, 293, 343, 442, 511 |
| SfaNI | GCATC | 1 cut(s) | 352 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 170 |
| Sse9I | AATT | 4 cut(s) | 112, 127, 321, 393 |
| SsiI | CCGC | 2 cut(s) | 32, 383 |
| SspMI | CTAG | 1 cut(s) | 526 |
| StyD4I | CCNGG | 2 cut(s) | 40, 258 |
| TaaI | ACNGT | 1 cut(s) | 348 |
| TaiI | ACGT | 2 cut(s) | 293, 442 |
| TasI | AATT | 4 cut(s) | 112, 127, 321, 393 |
| TatI | WGTACW | 1 cut(s) | 15 |
| TfiI | GAWTC | 1 cut(s) | 277 |
| Tru1I | TTAA | 4 cut(s) | 75, 111, 216, 282 |
| Tru9I | TTAA | 4 cut(s) | 75, 111, 216, 282 |
| TscAI | CASTG | 1 cut(s) | 177 |
| TseI | GCWGC | 2 cut(s) | 433, 478 |
| TspDTI | ATGAA | 2 cut(s) | 59, 175 |
| TspRI | CASTG | 1 cut(s) | 177 |
| VspI | ATTAAT | 1 cut(s) | 111 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 394, 399 |
| XspI | CTAG | 1 cut(s) | 526 |
| ZrmI | AGTACT | 1 cut(s) | 17 |