Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 81 - 201 | 2.7e-19 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 210 |
| AciI | CCGC | 1 cut(s) | 641 |
| AcoI | YGGCCR | 1 cut(s) | 255 |
| AfaI | GTAC | 1 cut(s) | 130 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 430 |
| AgsI | TTSAA | 2 cut(s) | 444, 458 |
| AjnI | CCWGG | 1 cut(s) | 112 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 342, 374 |
| AluBI | AGCT | 4 cut(s) | 47, 83, 370, 612 |
| AluI | AGCT | 4 cut(s) | 47, 83, 370, 612 |
| Alw21I | GWGCWC | 2 cut(s) | 49, 614 |
| Alw26I | GTCTC | 1 cut(s) | 317 |
| AoxI | GGCC | 2 cut(s) | 255, 272 |
| ApeKI | GCWGC | 1 cut(s) | 278 |
| AspS9I | GGNCC | 3 cut(s) | 101, 272, 346 |
| AsuC2I | CCSGG | 1 cut(s) | 270 |
| AsuHPI | GGTGA | 1 cut(s) | 128 |
| AsuII | TTCGAA | 1 cut(s) | 298 |
| AvaII | GGWCC | 2 cut(s) | 101, 346 |
| BalI | TGGCCA | 1 cut(s) | 257 |
| BanI | GGYRCC | 1 cut(s) | 210 |
| BanII | GRGCYC | 2 cut(s) | 49, 614 |
| BbsI | GAAGAC | 1 cut(s) | 677 |
| Bbv12I | GWGCWC | 2 cut(s) | 49, 614 |
| BbvI | GCAGC | 1 cut(s) | 265 |
| BccI | CCATC | 2 cut(s) | 242, 408 |
| BciT130I | CCWGG | 1 cut(s) | 114 |
| BcnI | CCSGG | 1 cut(s) | 270 |
| BcoDI | GTCTC | 1 cut(s) | 317 |
| BglII | AGATCT | 1 cut(s) | 474 |
| BisI | GCNGC | 1 cut(s) | 279 |
| BlsI | GCNGC | 1 cut(s) | 280 |
| Bme1390I | CCNGG | 2 cut(s) | 114, 270 |
| Bme18I | GGWCC | 2 cut(s) | 101, 346 |
| BmgT120I | GGNCC | 3 cut(s) | 101, 272, 346 |
| BmiI | GGNNCC | 3 cut(s) | 212, 273, 347 |
| BmrFI | CCNGG | 2 cut(s) | 114, 270 |
| BmsI | GCATC | 2 cut(s) | 109, 539 |
| BpiI | GAAGAC | 1 cut(s) | 677 |
| BpmI | CTGGAG | 2 cut(s) | 452, 630 |
| Bpu10I | CCTNAGC | 1 cut(s) | 306 |
| Bpu14I | TTCGAA | 1 cut(s) | 298 |
| BpuEI | CTTGAG | 1 cut(s) | 541 |
| BpuMI | CCSGG | 1 cut(s) | 270 |
| BsaI | GGTCTC | 1 cut(s) | 317 |
| BsaJI | CCNNGG | 5 cut(s) | 227, 258, 269, 334, 488 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 430 |
| Bse1I | ACTGG | 1 cut(s) | 647 |
| BseBI | CCWGG | 1 cut(s) | 114 |
| BseDI | CCNNGG | 5 cut(s) | 227, 258, 269, 334, 488 |
| BseGI | GGATG | 1 cut(s) | 419 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 430 |
| BseMII | CTCAG | 1 cut(s) | 485 |
| BseNI | ACTGG | 1 cut(s) | 647 |
| BseRI | GAGGAG | 1 cut(s) | 207 |
| BseXI | GCAGC | 1 cut(s) | 265 |
| BshFI | GGCC | 2 cut(s) | 257, 274 |
| BshNI | GGYRCC | 1 cut(s) | 210 |
| BsiHKAI | GWGCWC | 2 cut(s) | 49, 614 |
| BsiSI | CCGG | 1 cut(s) | 269 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 430 |
| BsmAI | GTCTC | 1 cut(s) | 317 |
| BsnI | GGCC | 2 cut(s) | 257, 274 |
| Bso31I | GGTCTC | 1 cut(s) | 317 |
| Bsp119I | TTCGAA | 1 cut(s) | 298 |
| Bsp1286I | GDGCHC | 2 cut(s) | 49, 614 |
| Bsp143I | GATC | 3 cut(s) | 394, 474, 651 |
| Bsp19I | CCATGG | 1 cut(s) | 227 |
| BspACI | CCGC | 1 cut(s) | 641 |
| BspANI | GGCC | 2 cut(s) | 257, 274 |
| BspCNI | CTCAG | 1 cut(s) | 484 |
| BspLI | GGNNCC | 3 cut(s) | 212, 273, 347 |
| BspQI | GCTCTTC | 1 cut(s) | 619 |
| BspT104I | TTCGAA | 1 cut(s) | 298 |
| BspT107I | GGYRCC | 1 cut(s) | 210 |
| BspTNI | GGTCTC | 1 cut(s) | 317 |
| BsrI | ACTGG | 1 cut(s) | 647 |
| BssECI | CCNNGG | 5 cut(s) | 227, 258, 269, 334, 488 |
| BssMI | GATC | 3 cut(s) | 394, 474, 651 |
| BssT1I | CCWWGG | 3 cut(s) | 227, 258, 334 |
| Bst2UI | CCWGG | 1 cut(s) | 114 |
| Bst4CI | ACNGT | 4 cut(s) | 133, 144, 580, 679 |
| Bst6I | CTCTTC | 2 cut(s) | 60, 619 |
| BstBI | TTCGAA | 1 cut(s) | 298 |
| BstC8I | GCNNGC | 1 cut(s) | 276 |
| BstDEI | CTNAG | 2 cut(s) | 306, 471 |
| BstDSI | CCRYGG | 2 cut(s) | 227, 488 |
| BstEII | GGTNACC | 1 cut(s) | 657 |
| BstF5I | GGATG | 1 cut(s) | 419 |
| BstKTI | GATC | 3 cut(s) | 397, 477, 654 |
| BstMAI | GTCTC | 1 cut(s) | 317 |
| BstMBI | GATC | 3 cut(s) | 394, 474, 651 |
| BstNI | CCWGG | 1 cut(s) | 114 |
| BstPI | GGTNACC | 1 cut(s) | 657 |
| BstSCI | CCNGG | 2 cut(s) | 112, 268 |
| BstV1I | GCAGC | 1 cut(s) | 265 |
| BstV2I | GAAGAC | 1 cut(s) | 677 |
| BstX2I | RGATCY | 1 cut(s) | 474 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 341, 654 |
| BstYI | RGATCY | 1 cut(s) | 474 |
| BsuRI | GGCC | 2 cut(s) | 257, 274 |
| BtgI | CCRYGG | 2 cut(s) | 227, 488 |
| BtsCI | GGATG | 1 cut(s) | 419 |
| BtsIMutI | CAGTG | 2 cut(s) | 138, 654 |
| Cac8I | GCNNGC | 1 cut(s) | 276 |
| Cfr13I | GGNCC | 3 cut(s) | 101, 272, 346 |
| Csp6I | GTAC | 1 cut(s) | 129 |
| CviAII | CATG | 2 cut(s) | 228, 362 |
| CviQI | GTAC | 1 cut(s) | 129 |
| DdeI | CTNAG | 2 cut(s) | 306, 471 |
| DpnI | GATC | 3 cut(s) | 396, 476, 653 |
| DpnII | GATC | 3 cut(s) | 394, 474, 651 |
| DraI | TTTAAA | 2 cut(s) | 406, 624 |
| EaeI | YGGCCR | 1 cut(s) | 255 |
| Eam1104I | CTCTTC | 2 cut(s) | 60, 619 |
| EarI | CTCTTC | 2 cut(s) | 60, 619 |
| Ecl136II | GAGCTC | 2 cut(s) | 47, 612 |
| Eco130I | CCWWGG | 3 cut(s) | 227, 258, 334 |
| Eco24I | GRGCYC | 2 cut(s) | 49, 614 |
| Eco31I | GGTCTC | 1 cut(s) | 317 |
| Eco47I | GGWCC | 2 cut(s) | 101, 346 |
| Eco53kI | GAGCTC | 2 cut(s) | 47, 612 |
| Eco91I | GGTNACC | 1 cut(s) | 657 |
| EcoICRI | GAGCTC | 2 cut(s) | 47, 612 |
| EcoO109I | RGGNCCY | 2 cut(s) | 101, 272 |
| EcoO65I | GGTNACC | 1 cut(s) | 657 |
| EcoRII | CCWGG | 1 cut(s) | 112 |
| EcoT14I | CCWWGG | 3 cut(s) | 227, 258, 334 |
| EcoT22I | ATGCAT | 1 cut(s) | 96 |
| EcoT38I | GRGCYC | 2 cut(s) | 49, 614 |
| ErhI | CCWWGG | 3 cut(s) | 227, 258, 334 |
| FaeI | CATG | 2 cut(s) | 231, 365 |
| FatI | CATG | 2 cut(s) | 227, 361 |
| FauI | CCCGC | 1 cut(s) | 648 |
| Fnu4HI | GCNGC | 1 cut(s) | 279 |
| FokI | GGATG | 1 cut(s) | 426 |
| FriOI | GRGCYC | 2 cut(s) | 49, 614 |
| Fsp4HI | GCNGC | 1 cut(s) | 279 |
| GluI | GCNGC | 1 cut(s) | 279 |
| GsuI | CTGGAG | 2 cut(s) | 452, 630 |
| HaeIII | GGCC | 2 cut(s) | 257, 274 |
| HapII | CCGG | 1 cut(s) | 269 |
| Hin1II | CATG | 2 cut(s) | 231, 365 |
| HindIII | AAGCTT | 1 cut(s) | 81 |
| HinfI | GANTC | 5 cut(s) | 27, 440, 502, 523, 587 |
| HpaII | CCGG | 1 cut(s) | 269 |
| HphI | GGTGA | 1 cut(s) | 128 |
| Hpy188I | TCNGA | 1 cut(s) | 474 |
| Hpy188III | TCNNGA | 2 cut(s) | 10, 566 |
| Hpy99I | CGWCG | 1 cut(s) | 683 |
| HpyAV | CCTTC | 2 cut(s) | 7, 60 |
| HpyCH4III | ACNGT | 4 cut(s) | 133, 144, 580, 679 |
| HpyCH4V | TGCA | 5 cut(s) | 94, 365, 401, 584, 667 |
| HpyF3I | CTNAG | 2 cut(s) | 306, 471 |
| Hsp92II | CATG | 2 cut(s) | 231, 365 |
| Kzo9I | GATC | 3 cut(s) | 394, 474, 651 |
| LguI | GCTCTTC | 1 cut(s) | 619 |
| LmnI | GCTCC | 3 cut(s) | 52, 172, 557 |
| Lsp1109I | GCAGC | 1 cut(s) | 265 |
| LweI | GCATC | 2 cut(s) | 109, 539 |
| MaeIII | GTNAC | 2 cut(s) | 495, 657 |
| MalI | GATC | 3 cut(s) | 396, 476, 653 |
| MboI | GATC | 3 cut(s) | 394, 474, 651 |
| MboII | GAAGA | 4 cut(s) | 47, 446, 606, 677 |
| MflI | RGATCY | 1 cut(s) | 474 |
| MhlI | GDGCHC | 2 cut(s) | 49, 614 |
| MlsI | TGGCCA | 1 cut(s) | 257 |
| MluCI | AATT | 4 cut(s) | 236, 339, 390, 514 |
| MluNI | TGGCCA | 1 cut(s) | 257 |
| MlyI | GAGTC | 4 cut(s) | 21, 496, 532, 581 |
| MnlI | CCTC | 8 cut(s) | 186, 225, 228, 317, 434, 495, 562, 654 |
| Mox20I | TGGCCA | 1 cut(s) | 257 |
| Mph1103I | ATGCAT | 1 cut(s) | 96 |
| MscI | TGGCCA | 1 cut(s) | 257 |
| MseI | TTAA | 5 cut(s) | 239, 405, 513, 623, 703 |
| Msp20I | TGGCCA | 1 cut(s) | 257 |
| MspI | CCGG | 1 cut(s) | 269 |
| MspR9I | CCNGG | 2 cut(s) | 114, 270 |
| MvaI | CCWGG | 1 cut(s) | 114 |
| NciI | CCSGG | 1 cut(s) | 270 |
| NcoI | CCATGG | 1 cut(s) | 227 |
| NdeII | GATC | 3 cut(s) | 394, 474, 651 |
| NlaIII | CATG | 2 cut(s) | 231, 365 |
| NlaIV | GGNNCC | 3 cut(s) | 212, 273, 347 |
| NsiI | ATGCAT | 1 cut(s) | 96 |
| NspV | TTCGAA | 1 cut(s) | 298 |
| PciSI | GCTCTTC | 1 cut(s) | 619 |
| PfeI | GAWTC | 1 cut(s) | 440 |
| PflFI | GACNNNGTC | 1 cut(s) | 677 |
| PkrI | GCNGC | 1 cut(s) | 280 |
| PleI | GAGTC | 4 cut(s) | 21, 496, 531, 581 |
| PpsI | GAGTC | 4 cut(s) | 21, 496, 531, 581 |
| PpuMI | RGGWCCY | 1 cut(s) | 101 |
| Psp124BI | GAGCTC | 2 cut(s) | 49, 614 |
| Psp5II | RGGWCCY | 1 cut(s) | 101 |
| Psp6I | CCWGG | 1 cut(s) | 112 |
| PspEI | GGTNACC | 1 cut(s) | 657 |
| PspGI | CCWGG | 1 cut(s) | 112 |
| PspN4I | GGNNCC | 3 cut(s) | 212, 273, 347 |
| PspPI | GGNCC | 3 cut(s) | 101, 272, 346 |
| PspPPI | RGGWCCY | 1 cut(s) | 101 |
| PsuI | RGATCY | 1 cut(s) | 474 |
| PsyI | GACNNNGTC | 1 cut(s) | 677 |
| RsaI | GTAC | 1 cut(s) | 130 |
| RsaNI | GTAC | 1 cut(s) | 129 |
| SacI | GAGCTC | 2 cut(s) | 49, 614 |
| SapI | GCTCTTC | 1 cut(s) | 619 |
| SaqAI | TTAA | 5 cut(s) | 239, 405, 513, 623, 703 |
| SatI | GCNGC | 1 cut(s) | 279 |
| Sau3AI | GATC | 3 cut(s) | 394, 474, 651 |
| Sau96I | GGNCC | 3 cut(s) | 101, 272, 346 |
| SchI | GAGTC | 4 cut(s) | 21, 496, 532, 581 |
| ScrFI | CCNGG | 2 cut(s) | 114, 270 |
| SduI | GDGCHC | 2 cut(s) | 49, 614 |
| SetI | ASST | 8 cut(s) | 49, 85, 103, 328, 372, 426, 614, 664 |
| SfaNI | GCATC | 2 cut(s) | 109, 539 |
| SfuI | TTCGAA | 1 cut(s) | 298 |
| SinI | GGWCC | 2 cut(s) | 101, 346 |
| SmlI | CTYRAG | 1 cut(s) | 520 |
| SmoI | CTYRAG | 1 cut(s) | 520 |
| Sse9I | AATT | 4 cut(s) | 236, 339, 390, 514 |
| SsiI | CCGC | 1 cut(s) | 641 |
| SstI | GAGCTC | 2 cut(s) | 49, 614 |
| StyD4I | CCNGG | 2 cut(s) | 112, 268 |
| StyI | CCWWGG | 3 cut(s) | 227, 258, 334 |
| TaaI | ACNGT | 4 cut(s) | 133, 144, 580, 679 |
| TaqI | TCGA | 4 cut(s) | 19, 58, 178, 298 |
| TaqII | GACCGA | 1 cut(s) | 671 |
| TasI | AATT | 4 cut(s) | 236, 339, 390, 514 |
| TfiI | GAWTC | 1 cut(s) | 440 |
| Tru1I | TTAA | 5 cut(s) | 239, 405, 513, 623, 703 |
| Tru9I | TTAA | 5 cut(s) | 239, 405, 513, 623, 703 |
| TscAI | CASTG | 2 cut(s) | 138, 654 |
| TseI | GCWGC | 1 cut(s) | 278 |
| TspDTI | ATGAA | 2 cut(s) | 350, 606 |
| TspGWI | ACGGA | 2 cut(s) | 477, 514 |
| TspRI | CASTG | 2 cut(s) | 138, 654 |
| Tth111I | GACNNNGTC | 1 cut(s) | 677 |
| VpaK11BI | GGWCC | 2 cut(s) | 101, 346 |
| Zsp2I | ATGCAT | 1 cut(s) | 96 |