ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1095 |
| Acc16I | TGCGCA | 1 cut(s) | 3072 |
| Acc36I | ACCTGC | 1 cut(s) | 3502 |
| AccB1I | GGYRCC | 3 cut(s) | 2937, 3409, 3429 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 285 |
| AccI | GTMKAC | 5 cut(s) | 207, 677, 2095, 2264, 2423 |
| AccII | CGCG | 3 cut(s) | 212, 355, 3415 |
| AclI | AACGTT | 2 cut(s) | 2017, 2662 |
| AclWI | GGATC | 3 cut(s) | 1052, 1784, 1797 |
| AcoI | YGGCCR | 3 cut(s) | 515, 1446, 3710 |
| AcsI | RAATTY | 9 cut(s) | 976, 1372, 1723, 1744, 2593, 2683, 2720, 2754, 3282 |
| AcuI | CTGAAG | 3 cut(s) | 402, 891, 1095 |
| AcyI | GRCGYC | 3 cut(s) | 1778, 2938, 3410 |
| AfaI | GTAC | 7 cut(s) | 79, 594, 1969, 2041, 2231, 2674, 3019 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 285, 927, 1003, 1684, 2169, 2517, 3125, 3846 |
| AflII | CTTAAG | 1 cut(s) | 746 |
| AflIII | ACRYGT | 3 cut(s) | 1222, 2267, 3076 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 736 |
| AhlI | ACTAGT | 3 cut(s) | 133, 3122, 3665 |
| AjiI | CACGTC | 1 cut(s) | 1223 |
| AjnI | CCWGG | 5 cut(s) | 595, 683, 1255, 3331, 3487 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1357, 1389, 2269, 2301 |
| Alw21I | GWGCWC | 2 cut(s) | 1917, 2275 |
| Alw26I | GTCTC | 4 cut(s) | 294, 350, 2391, 3212 |
| AlwI | GGATC | 3 cut(s) | 1052, 1784, 1797 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 3002, 3494 |
| Ama87I | CYCGRG | 1 cut(s) | 543 |
| ApeKI | GCWGC | 9 cut(s) | 26, 2399, 2451, 2481, 2534, 2747, 2971, 3317, 3497 |
| ApoI | RAATTY | 9 cut(s) | 976, 1372, 1723, 1744, 2593, 2683, 2720, 2754, 3282 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 659, 691 |
| AseI | ATTAAT | 2 cut(s) | 1770, 2798 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1215, 2757 |
| AspLEI | GCGC | 6 cut(s) | 355, 1014, 2940, 3073, 3267, 3412 |
| AspS9I | GGNCC | 9 cut(s) | 602, 799, 1240, 1259, 1496, 2362, 2508, 2706, 3491 |
| AsuC2I | CCSGG | 1 cut(s) | 1275 |
| AsuHPI | GGTGA | 2 cut(s) | 1994, 2602 |
| AsuII | TTCGAA | 1 cut(s) | 3341 |
| AsuNHI | GCTAGC | 1 cut(s) | 3091 |
| AvaI | CYCGRG | 1 cut(s) | 543 |
| AvaII | GGWCC | 7 cut(s) | 602, 1240, 1259, 1496, 2508, 2706, 3491 |
| BalI | TGGCCA | 2 cut(s) | 517, 1448 |
| BamHI | GGATCC | 1 cut(s) | 1789 |
| BanI | GGYRCC | 3 cut(s) | 2937, 3409, 3429 |
| BanII | GRGCYC | 1 cut(s) | 325 |
| BauI | CACGAG | 1 cut(s) | 939 |
| Bbv12I | GWGCWC | 2 cut(s) | 1917, 2275 |
| BbvI | GCAGC | 9 cut(s) | 13, 2411, 2463, 2468, 2546, 2734, 2983, 3304, 3509 |
| BceAI | ACGGC | 3 cut(s) | 488, 1533, 3697 |
| BciT130I | CCWGG | 5 cut(s) | 597, 685, 1257, 3333, 3489 |
| BciVI | GTATCC | 2 cut(s) | 2837, 2999 |
| BclI | TGATCA | 2 cut(s) | 556, 3600 |
| BcnI | CCSGG | 1 cut(s) | 1275 |
| BcoDI | GTCTC | 4 cut(s) | 294, 350, 2391, 3212 |
| BcuI | ACTAGT | 3 cut(s) | 133, 3122, 3665 |
| BfaI | CTAG | 7 cut(s) | 134, 1248, 2852, 3092, 3123, 3201, 3666 |
| BfmI | CTRYAG | 4 cut(s) | 144, 1206, 1500, 3495 |
| BfoI | RGCGCY | 4 cut(s) | 1015, 2941, 3268, 3413 |
| BfrI | CTTAAG | 1 cut(s) | 746 |
| BfuAI | ACCTGC | 1 cut(s) | 3502 |
| BfuI | GTATCC | 2 cut(s) | 2837, 2999 |
| BlpI | GCTNAGC | 2 cut(s) | 1752, 3739 |
| BmcAI | AGTACT | 1 cut(s) | 1969 |
| Bme1390I | CCNGG | 6 cut(s) | 597, 685, 1257, 1275, 3333, 3489 |
| Bme18I | GGWCC | 7 cut(s) | 602, 1240, 1259, 1496, 2508, 2706, 3491 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 736 |
| BmeT110I | CYCGRG | 1 cut(s) | 543 |
| BmgBI | CACGTC | 1 cut(s) | 1223 |
| BmgT120I | GGNCC | 9 cut(s) | 602, 799, 1240, 1259, 1496, 2362, 2508, 2706, 3491 |
| BmrFI | CCNGG | 6 cut(s) | 597, 685, 1257, 1275, 3333, 3489 |
| BmrI | ACTGGG | 1 cut(s) | 43 |
| BmsI | GCATC | 6 cut(s) | 702, 919, 1849, 2468, 3629, 3690 |
| BmtI | GCTAGC | 1 cut(s) | 3095 |
| BmuI | ACTGGG | 1 cut(s) | 43 |
| BpmI | CTGGAG | 1 cut(s) | 2313 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2818 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 1752, 3739 |
| Bpu14I | TTCGAA | 1 cut(s) | 3341 |
| BpuEI | CTTGAG | 2 cut(s) | 2366, 3281 |
| BpuMI | CCSGG | 1 cut(s) | 1275 |
| Bsa29I | ATCGAT | 1 cut(s) | 2497 |
| BsaAI | YACGTR | 3 cut(s) | 1511, 2375, 3746 |
| BsaHI | GRCGYC | 3 cut(s) | 1778, 2938, 3410 |
| BsaWI | WCCGGW | 1 cut(s) | 2737 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1608, 1638 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 285, 927, 1003, 1684, 2169, 2517, 3125, 3846 |
| Bse118I | RCCGGY | 1 cut(s) | 581 |
| Bse1I | ACTGG | 4 cut(s) | 38, 1673, 1984, 3625 |
| Bse3DI | GCAATG | 7 cut(s) | 378, 758, 1024, 1815, 2708, 3092, 3762 |
| BseBI | CCWGG | 5 cut(s) | 597, 685, 1257, 3333, 3489 |
| BseCI | ATCGAT | 1 cut(s) | 2497 |
| BseGI | GGATG | 7 cut(s) | 294, 506, 1180, 2584, 2607, 3836, 3898 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 285, 927, 1003, 1684, 2169, 2517, 3125, 3846 |
| BseMI | GCAATG | 7 cut(s) | 378, 758, 1024, 1815, 2708, 3092, 3762 |
| BseMII | CTCAG | 5 cut(s) | 948, 1161, 1439, 2832, 3374 |
| BseNI | ACTGG | 4 cut(s) | 38, 1673, 1984, 3625 |
| BseRI | GAGGAG | 1 cut(s) | 1699 |
| BseXI | GCAGC | 9 cut(s) | 13, 2411, 2463, 2468, 2546, 2734, 2983, 3304, 3509 |
| BsgI | GTGCAG | 2 cut(s) | 207, 2990 |
| Bsh1236I | CGCG | 3 cut(s) | 212, 355, 3415 |
| BshNI | GGYRCC | 3 cut(s) | 2937, 3409, 3429 |
| BshVI | ATCGAT | 1 cut(s) | 2497 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1917, 2275 |
| BsiHKCI | CYCGRG | 1 cut(s) | 543 |
| BsiSI | CCGG | 3 cut(s) | 582, 1275, 2738 |
| BslFI | GGGAC | 5 cut(s) | 684, 944, 1789, 3121, 3576 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 285, 927, 1003, 1684, 2169, 2517, 3125, 3846 |
| BsmAI | GTCTC | 4 cut(s) | 294, 350, 2391, 3212 |
| BsmFI | GGGAC | 5 cut(s) | 684, 944, 1789, 3121, 3576 |
| BsmI | GAATGC | 1 cut(s) | 2623 |
| BsoBI | CYCGRG | 1 cut(s) | 543 |
| Bsp119I | TTCGAA | 1 cut(s) | 3341 |
| Bsp1286I | GDGCHC | 3 cut(s) | 325, 1917, 2275 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 1752, 3739 |
| Bsp19I | CCATGG | 3 cut(s) | 1161, 2163, 3526 |
| BspCNI | CTCAG | 5 cut(s) | 949, 1162, 1438, 2831, 3373 |
| BspDI | ATCGAT | 1 cut(s) | 2497 |
| BspFNI | CGCG | 3 cut(s) | 212, 355, 3415 |
| BspHI | TCATGA | 2 cut(s) | 325, 2188 |
| BspMAI | CTGCAG | 3 cut(s) | 148, 1210, 3499 |
| BspMI | ACCTGC | 1 cut(s) | 3502 |
| BspOI | GCTAGC | 1 cut(s) | 3095 |
| BspPI | GGATC | 3 cut(s) | 1052, 1784, 1797 |
| BspQI | GCTCTTC | 3 cut(s) | 543, 1021, 2544 |
| BspT104I | TTCGAA | 1 cut(s) | 3341 |
| BspT107I | GGYRCC | 3 cut(s) | 2937, 3409, 3429 |
| BspTI | CTTAAG | 1 cut(s) | 746 |
| BsrDI | GCAATG | 7 cut(s) | 378, 758, 1024, 1815, 2708, 3092, 3762 |
| BsrFI | RCCGGY | 1 cut(s) | 581 |
| BsrI | ACTGG | 4 cut(s) | 38, 1673, 1984, 3625 |
| BssAI | RCCGGY | 1 cut(s) | 581 |
| BssNAI | GTATAC | 1 cut(s) | 2096 |
| BssNI | GRCGYC | 3 cut(s) | 1778, 2938, 3410 |
| BssSI | CACGAG | 1 cut(s) | 939 |
| BssT1I | CCWWGG | 9 cut(s) | 284, 1161, 1889, 2163, 2365, 3446, 3526, 3707, 3840 |
| Bst1107I | GTATAC | 1 cut(s) | 2096 |
| Bst2BI | CACGAG | 1 cut(s) | 939 |
| Bst2UI | CCWGG | 5 cut(s) | 597, 685, 1257, 3333, 3489 |
| Bst4CI | ACNGT | 9 cut(s) | 530, 766, 1845, 2469, 2677, 2919, 2998, 3551, 3799 |
| BstACI | GRCGYC | 3 cut(s) | 1778, 2938, 3410 |
| BstAFI | CTTAAG | 1 cut(s) | 746 |
| BstBAI | YACGTR | 3 cut(s) | 1511, 2375, 3746 |
| BstBI | TTCGAA | 1 cut(s) | 3341 |
| BstDSI | CCRYGG | 5 cut(s) | 1161, 2163, 2915, 3413, 3526 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 925, 1682 |
| BstF5I | GGATG | 7 cut(s) | 294, 506, 1180, 2584, 2607, 3836, 3898 |
| BstFNI | CGCG | 3 cut(s) | 212, 355, 3415 |
| BstH2I | RGCGCY | 4 cut(s) | 1015, 2941, 3268, 3413 |
| BstHHI | GCGC | 6 cut(s) | 355, 1014, 2940, 3073, 3267, 3412 |
| BstMAI | GTCTC | 4 cut(s) | 294, 350, 2391, 3212 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 35, 221, 329, 1193, 1826, 2120, 2148, 3221, 3581 |
| BstNI | CCWGG | 5 cut(s) | 597, 685, 1257, 3333, 3489 |
| BstNSI | RCATGY | 6 cut(s) | 2271, 3080, 3099, 3331, 3681, 3854 |
| BstSCI | CCNGG | 6 cut(s) | 595, 683, 1255, 1273, 3331, 3487 |
| BstSFI | CTRYAG | 4 cut(s) | 144, 1206, 1500, 3495 |
| BstUI | CGCG | 3 cut(s) | 212, 355, 3415 |
| BstV1I | GCAGC | 9 cut(s) | 13, 2411, 2463, 2468, 2546, 2734, 2983, 3304, 3509 |
| BstX2I | RGATCY | 1 cut(s) | 1789 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 96 |
| BstYI | RGATCY | 1 cut(s) | 1789 |
| BstZ17I | GTATAC | 1 cut(s) | 2096 |
| Bsu15I | ATCGAT | 1 cut(s) | 2497 |
| BsuI | GTATCC | 2 cut(s) | 2837, 2999 |
| BsuTUI | ATCGAT | 1 cut(s) | 2497 |
| BtgI | CCRYGG | 5 cut(s) | 1161, 2163, 2915, 3413, 3526 |
| BtgZI | GCGATG | 1 cut(s) | 3652 |
| BtrI | CACGTC | 1 cut(s) | 1223 |
| BtsCI | GGATG | 7 cut(s) | 294, 506, 1180, 2584, 2607, 3836, 3898 |
| BtsI | GCAGTG | 1 cut(s) | 1203 |
| BtsIMutI | CAGTG | 4 cut(s) | 762, 1203, 1666, 3003 |
| BveI | ACCTGC | 1 cut(s) | 3502 |
| CaiI | CAGNNNCTG | 2 cut(s) | 3002, 3494 |
| CciI | TCATGA | 2 cut(s) | 325, 2188 |
| CfoI | GCGC | 6 cut(s) | 355, 1014, 2940, 3073, 3267, 3412 |
| Cfr10I | RCCGGY | 1 cut(s) | 581 |
| Cfr13I | GGNCC | 9 cut(s) | 602, 799, 1240, 1259, 1496, 2362, 2508, 2706, 3491 |
| Cfr42I | CCGCGG | 1 cut(s) | 3416 |
| ClaI | ATCGAT | 1 cut(s) | 2497 |
| CseI | GACGC | 1 cut(s) | 1786 |
| Csp6I | GTAC | 7 cut(s) | 78, 593, 1968, 2040, 2230, 2673, 3018 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 611, 646 |
| CviQI | GTAC | 7 cut(s) | 78, 593, 1968, 2040, 2230, 2673, 3018 |
| DinI | GGCGCC | 2 cut(s) | 2939, 3411 |
| DraI | TTTAAA | 2 cut(s) | 1743, 2529 |
| DriI | GACNNNNNGTC | 1 cut(s) | 736 |
| EaeI | YGGCCR | 3 cut(s) | 515, 1446, 3710 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 736 |
| Eco130I | CCWWGG | 9 cut(s) | 284, 1161, 1889, 2163, 2365, 3446, 3526, 3707, 3840 |
| Eco147I | AGGCCT | 1 cut(s) | 920 |
| Eco24I | GRGCYC | 1 cut(s) | 325 |
| Eco32I | GATATC | 1 cut(s) | 2409 |
| Eco47I | GGWCC | 7 cut(s) | 602, 1240, 1259, 1496, 2508, 2706, 3491 |
| Eco57I | CTGAAG | 3 cut(s) | 402, 891, 1095 |
| Eco88I | CYCGRG | 1 cut(s) | 543 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 925, 1682 |
| EcoO109I | RGGNCCY | 5 cut(s) | 602, 1496, 2362, 2508, 3491 |
| EcoRI | GAATTC | 1 cut(s) | 1372 |
| EcoRII | CCWGG | 5 cut(s) | 595, 683, 1255, 3331, 3487 |
| EcoRV | GATATC | 1 cut(s) | 2409 |
| EcoT14I | CCWWGG | 9 cut(s) | 284, 1161, 1889, 2163, 2365, 3446, 3526, 3707, 3840 |
| EcoT22I | ATGCAT | 3 cut(s) | 1026, 2461, 3683 |
| EcoT38I | GRGCYC | 1 cut(s) | 325 |
| EgeI | GGCGCC | 2 cut(s) | 2939, 3411 |
| EheI | GGCGCC | 2 cut(s) | 2939, 3411 |
| ErhI | CCWWGG | 9 cut(s) | 284, 1161, 1889, 2163, 2365, 3446, 3526, 3707, 3840 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 171, 203, 1000, 1032, 3430, 3462 |
| FaqI | GGGAC | 5 cut(s) | 684, 944, 1789, 3121, 3576 |
| FauI | CCCGC | 3 cut(s) | 1004, 2161, 3870 |
| FbaI | TGATCA | 2 cut(s) | 556, 3600 |
| FblI | GTMKAC | 5 cut(s) | 207, 677, 2095, 2264, 2423 |
| FokI | GGATG | 7 cut(s) | 301, 513, 1187, 2591, 2614, 3823, 3905 |
| FriOI | GRGCYC | 1 cut(s) | 325 |
| FspBI | CTAG | 7 cut(s) | 134, 1248, 2852, 3092, 3123, 3201, 3666 |
| FspI | TGCGCA | 1 cut(s) | 3072 |
| GlaI | GCGC | 6 cut(s) | 354, 1013, 2939, 3072, 3266, 3411 |
| GsuI | CTGGAG | 1 cut(s) | 2313 |
| HaeII | RGCGCY | 4 cut(s) | 1015, 2941, 3268, 3413 |
| HapII | CCGG | 3 cut(s) | 582, 1275, 2738 |
| HgaI | GACGC | 1 cut(s) | 1786 |
| HhaI | GCGC | 6 cut(s) | 355, 1014, 2940, 3073, 3267, 3412 |
| Hin1I | GRCGYC | 3 cut(s) | 1778, 2938, 3410 |
| Hin6I | GCGC | 6 cut(s) | 353, 1012, 2938, 3071, 3265, 3410 |
| HinP1I | GCGC | 6 cut(s) | 353, 1012, 2938, 3071, 3265, 3410 |
| HincII | GTYRAC | 4 cut(s) | 269, 678, 813, 3355 |
| HindII | GTYRAC | 4 cut(s) | 269, 678, 813, 3355 |
| HindIII | AAGCTT | 1 cut(s) | 3245 |
| HinfI | GANTC | 8 cut(s) | 4, 14, 46, 1216, 1716, 3038, 3659, 3903 |
| HpaII | CCGG | 3 cut(s) | 582, 1275, 2738 |
| HphI | GGTGA | 2 cut(s) | 1994, 2602 |
| Hpy99I | CGWCG | 5 cut(s) | 237, 474, 1224, 1554, 2094 |
| HpyCH4III | ACNGT | 9 cut(s) | 530, 766, 1845, 2469, 2677, 2919, 2998, 3551, 3799 |
| HpyCH4IV | ACGT | 8 cut(s) | 232, 1222, 1510, 2017, 2092, 2374, 2662, 3745 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 35, 221, 329, 1193, 1826, 2120, 2148, 3221, 3581 |
| HpySE526I | ACGT | 8 cut(s) | 232, 1222, 1510, 2017, 2092, 2374, 2662, 3745 |
| Hsp92I | GRCGYC | 3 cut(s) | 1778, 2938, 3410 |
| HspAI | GCGC | 6 cut(s) | 353, 1012, 2938, 3071, 3265, 3410 |
| KasI | GGCGCC | 2 cut(s) | 2937, 3409 |
| Ksp22I | TGATCA | 2 cut(s) | 556, 3600 |
| KspI | CCGCGG | 1 cut(s) | 3416 |
| LguI | GCTCTTC | 3 cut(s) | 543, 1021, 2544 |
| LmnI | GCTCC | 7 cut(s) | 488, 1126, 1283, 2448, 2650, 2806, 3325 |
| Lsp1109I | GCAGC | 9 cut(s) | 13, 2411, 2463, 2468, 2546, 2734, 2983, 3304, 3509 |
| LweI | GCATC | 6 cut(s) | 702, 919, 1849, 2468, 3629, 3690 |
| MaeI | CTAG | 7 cut(s) | 134, 1248, 2852, 3092, 3123, 3201, 3666 |
| MaeII | ACGT | 8 cut(s) | 232, 1222, 1510, 2017, 2092, 2374, 2662, 3745 |
| MaeIII | GTNAC | 5 cut(s) | 1982, 3055, 3518, 3545, 3714 |
| MfeI | CAATTG | 2 cut(s) | 1437, 2775 |
| MflI | RGATCY | 1 cut(s) | 1789 |
| MhlI | GDGCHC | 3 cut(s) | 325, 1917, 2275 |
| MlsI | TGGCCA | 2 cut(s) | 517, 1448 |
| MluNI | TGGCCA | 2 cut(s) | 517, 1448 |
| Mly113I | GGCGCC | 2 cut(s) | 2938, 3410 |
| MlyI | GAGTC | 1 cut(s) | 8 |
| MmeI | TCCRAC | 1 cut(s) | 228 |
| Mox20I | TGGCCA | 2 cut(s) | 517, 1448 |
| Mph1103I | ATGCAT | 3 cut(s) | 1026, 2461, 3683 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1215, 2757 |
| MscI | TGGCCA | 2 cut(s) | 517, 1448 |
| MslI | CAYNNNNRTG | 2 cut(s) | 707, 990 |
| Msp20I | TGGCCA | 2 cut(s) | 517, 1448 |
| MspA1I | CMGCKG | 2 cut(s) | 692, 3415 |
| MspCI | CTTAAG | 1 cut(s) | 746 |
| MspI | CCGG | 3 cut(s) | 582, 1275, 2738 |
| MspR9I | CCNGG | 6 cut(s) | 597, 685, 1257, 1275, 3333, 3489 |
| MunI | CAATTG | 2 cut(s) | 1437, 2775 |
| Mva1269I | GAATGC | 1 cut(s) | 2623 |
| MvaI | CCWGG | 5 cut(s) | 597, 685, 1257, 3333, 3489 |
| MvnI | CGCG | 3 cut(s) | 212, 355, 3415 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 35, 221, 329, 1193, 1826, 2120, 2148, 3221, 3581 |
| NarI | GGCGCC | 2 cut(s) | 2938, 3410 |
| NciI | CCSGG | 1 cut(s) | 1275 |
| NcoI | CCATGG | 3 cut(s) | 1161, 2163, 3526 |
| NheI | GCTAGC | 1 cut(s) | 3091 |
| NmuCI | GTSAC | 3 cut(s) | 1982, 3055, 3518 |
| NsbI | TGCGCA | 1 cut(s) | 3072 |
| NsiI | ATGCAT | 3 cut(s) | 1026, 2461, 3683 |
| NspI | RCATGY | 6 cut(s) | 2271, 3080, 3099, 3331, 3681, 3854 |
| NspV | TTCGAA | 1 cut(s) | 3341 |
| PaeI | GCATGC | 2 cut(s) | 3099, 3681 |
| PagI | TCATGA | 2 cut(s) | 325, 2188 |
| PceI | AGGCCT | 1 cut(s) | 920 |
| PciI | ACATGT | 2 cut(s) | 2267, 3076 |
| PciSI | GCTCTTC | 3 cut(s) | 543, 1021, 2544 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1409 |
| PctI | GAATGC | 1 cut(s) | 2623 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1215, 2757 |
| PfeI | GAWTC | 7 cut(s) | 4, 46, 1216, 1716, 3038, 3659, 3903 |
| PflFI | GACNNNGTC | 1 cut(s) | 450 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 285 |
| PfoI | TCCNGGA | 1 cut(s) | 3487 |
| PleI | GAGTC | 1 cut(s) | 8 |
| PluTI | GGCGCC | 2 cut(s) | 2941, 3413 |
| PpsI | GAGTC | 1 cut(s) | 8 |
| Ppu21I | YACGTR | 3 cut(s) | 1511, 2375, 3746 |
| PpuMI | RGGWCCY | 4 cut(s) | 602, 1496, 2508, 3491 |
| PscI | ACATGT | 2 cut(s) | 2267, 3076 |
| PshBI | ATTAAT | 2 cut(s) | 1770, 2798 |
| PsiI | TTATAA | 1 cut(s) | 1095 |
| Psp1406I | AACGTT | 2 cut(s) | 2017, 2662 |
| Psp5II | RGGWCCY | 4 cut(s) | 602, 1496, 2508, 3491 |
| Psp6I | CCWGG | 5 cut(s) | 595, 683, 1255, 3331, 3487 |
| PspGI | CCWGG | 5 cut(s) | 595, 683, 1255, 3331, 3487 |
| PspPI | GGNCC | 9 cut(s) | 602, 799, 1240, 1259, 1496, 2362, 2508, 2706, 3491 |
| PspPPI | RGGWCCY | 4 cut(s) | 602, 1496, 2508, 3491 |
| PstI | CTGCAG | 3 cut(s) | 148, 1210, 3499 |
| PstNI | CAGNNNCTG | 2 cut(s) | 3002, 3494 |
| PsuI | RGATCY | 1 cut(s) | 1789 |
| PsyI | GACNNNGTC | 1 cut(s) | 450 |
| PvuII | CAGCTG | 1 cut(s) | 692 |
| RsaI | GTAC | 7 cut(s) | 79, 594, 1969, 2041, 2231, 2674, 3019 |
| RsaNI | GTAC | 7 cut(s) | 78, 593, 1968, 2040, 2230, 2673, 3018 |
| RseI | CAYNNNNRTG | 2 cut(s) | 707, 990 |
| SacII | CCGCGG | 1 cut(s) | 3416 |
| SalI | GTCGAC | 1 cut(s) | 676 |
| SapI | GCTCTTC | 3 cut(s) | 543, 1021, 2544 |
| Sau96I | GGNCC | 9 cut(s) | 602, 799, 1240, 1259, 1496, 2362, 2508, 2706, 3491 |
| ScaI | AGTACT | 1 cut(s) | 1969 |
| SchI | GAGTC | 1 cut(s) | 8 |
| ScrFI | CCNGG | 6 cut(s) | 597, 685, 1257, 1275, 3333, 3489 |
| SduI | GDGCHC | 3 cut(s) | 325, 1917, 2275 |
| SfaNI | GCATC | 6 cut(s) | 702, 919, 1849, 2468, 3629, 3690 |
| SfcI | CTRYAG | 4 cut(s) | 144, 1206, 1500, 3495 |
| SfoI | GGCGCC | 2 cut(s) | 2939, 3411 |
| Sfr303I | CCGCGG | 1 cut(s) | 3416 |
| SfuI | TTCGAA | 1 cut(s) | 3341 |
| SgrBI | CCGCGG | 1 cut(s) | 3416 |
| SinI | GGWCC | 7 cut(s) | 602, 1240, 1259, 1496, 2508, 2706, 3491 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 707, 990 |
| SmlI | CTYRAG | 3 cut(s) | 746, 2381, 3296 |
| SmoI | CTYRAG | 3 cut(s) | 746, 2381, 3296 |
| SpeI | ACTAGT | 3 cut(s) | 133, 3122, 3665 |
| SphI | GCATGC | 2 cut(s) | 3099, 3681 |
| SseBI | AGGCCT | 1 cut(s) | 920 |
| SspDI | GGCGCC | 2 cut(s) | 2937, 3409 |
| SspI | AATATT | 3 cut(s) | 1303, 1991, 3190 |
| SspMI | CTAG | 7 cut(s) | 134, 1248, 2852, 3092, 3123, 3201, 3666 |
| StuI | AGGCCT | 1 cut(s) | 920 |
| StyD4I | CCNGG | 6 cut(s) | 595, 683, 1255, 1273, 3331, 3487 |
| StyI | CCWWGG | 9 cut(s) | 284, 1161, 1889, 2163, 2365, 3446, 3526, 3707, 3840 |
| TaaI | ACNGT | 9 cut(s) | 530, 766, 1845, 2469, 2677, 2919, 2998, 3551, 3799 |
| TaiI | ACGT | 8 cut(s) | 235, 1225, 1513, 2020, 2095, 2377, 2665, 3748 |
| TatI | WGTACW | 3 cut(s) | 1967, 2229, 3017 |
| TauI | GCSGC | 4 cut(s) | 215, 512, 2335, 3415 |
| TfiI | GAWTC | 7 cut(s) | 4, 46, 1216, 1716, 3038, 3659, 3903 |
| TscAI | CASTG | 4 cut(s) | 769, 1210, 1673, 3003 |
| TseFI | GTSAC | 3 cut(s) | 1982, 3055, 3518 |
| TseI | GCWGC | 9 cut(s) | 26, 2399, 2451, 2481, 2534, 2747, 2971, 3317, 3497 |
| Tsp45I | GTSAC | 3 cut(s) | 1982, 3055, 3518 |
| TspGWI | ACGGA | 2 cut(s) | 1418, 1629 |
| TspRI | CASTG | 4 cut(s) | 769, 1210, 1673, 3003 |
| Tth111I | GACNNNGTC | 1 cut(s) | 450 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 285 |
| Vha464I | CTTAAG | 1 cut(s) | 746 |
| VpaK11BI | GGWCC | 7 cut(s) | 602, 1240, 1259, 1496, 2508, 2706, 3491 |
| VspI | ATTAAT | 2 cut(s) | 1770, 2798 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 925, 1682 |
| XapI | RAATTY | 9 cut(s) | 976, 1372, 1723, 1744, 2593, 2683, 2720, 2754, 3282 |
| XceI | RCATGY | 6 cut(s) | 2271, 3080, 3099, 3331, 3681, 3854 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 286, 3444, 3843 |
| XmiI | GTMKAC | 5 cut(s) | 207, 677, 2095, 2264, 2423 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1215, 2757 |
| XspI | CTAG | 7 cut(s) | 134, 1248, 2852, 3092, 3123, 3201, 3666 |
| ZrmI | AGTACT | 1 cut(s) | 1969 |
| Zsp2I | ATGCAT | 3 cut(s) | 1026, 2461, 3683 |