Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 2 cut(s) | 305, 455 |
| AclWI | GGATC | 3 cut(s) | 252, 360, 453 |
| AgsI | TTSAA | 2 cut(s) | 44, 124 |
| AhlI | ACTAGT | 1 cut(s) | 46 |
| AluBI | AGCT | 3 cut(s) | 105, 269, 292 |
| AluI | AGCT | 3 cut(s) | 105, 269, 292 |
| Alw26I | GTCTC | 1 cut(s) | 10 |
| AlwI | GGATC | 3 cut(s) | 252, 360, 453 |
| AoxI | GGCC | 2 cut(s) | 195, 233 |
| AseI | ATTAAT | 1 cut(s) | 222 |
| AspS9I | GGNCC | 3 cut(s) | 31, 196, 233 |
| AvaII | GGWCC | 1 cut(s) | 31 |
| AxyI | CCTNAGG | 1 cut(s) | 240 |
| BccI | CCATC | 4 cut(s) | 47, 223, 330, 341 |
| BcoDI | GTCTC | 1 cut(s) | 10 |
| BcuI | ACTAGT | 1 cut(s) | 46 |
| BfaI | CTAG | 3 cut(s) | 9, 47, 496 |
| Bme18I | GGWCC | 1 cut(s) | 31 |
| BmgT120I | GGNCC | 3 cut(s) | 31, 196, 233 |
| BmiI | GGNNCC | 1 cut(s) | 234 |
| BpmI | CTGGAG | 1 cut(s) | 412 |
| BpuEI | CTTGAG | 1 cut(s) | 119 |
| BsaBI | GATNNNNATC | 1 cut(s) | 351 |
| BsaI | GGTCTC | 1 cut(s) | 10 |
| Bse1I | ACTGG | 1 cut(s) | 283 |
| Bse21I | CCTNAGG | 1 cut(s) | 240 |
| Bse8I | GATNNNNATC | 1 cut(s) | 351 |
| BseGI | GGATG | 1 cut(s) | 352 |
| BseJI | GATNNNNATC | 1 cut(s) | 351 |
| BseMII | CTCAG | 2 cut(s) | 231, 279 |
| BseNI | ACTGG | 1 cut(s) | 283 |
| BshFI | GGCC | 2 cut(s) | 197, 235 |
| BsmAI | GTCTC | 1 cut(s) | 10 |
| BsmI | GAATGC | 1 cut(s) | 70 |
| BsnI | GGCC | 2 cut(s) | 197, 235 |
| Bso31I | GGTCTC | 1 cut(s) | 10 |
| Bsp143I | GATC | 3 cut(s) | 244, 352, 445 |
| BspANI | GGCC | 2 cut(s) | 197, 235 |
| BspCNI | CTCAG | 2 cut(s) | 232, 280 |
| BspLI | GGNNCC | 1 cut(s) | 234 |
| BspPI | GGATC | 3 cut(s) | 252, 360, 453 |
| BspTNI | GGTCTC | 1 cut(s) | 10 |
| BsrI | ACTGG | 1 cut(s) | 283 |
| BssMI | GATC | 3 cut(s) | 244, 352, 445 |
| BssNAI | GTATAC | 1 cut(s) | 306 |
| Bst1107I | GTATAC | 1 cut(s) | 306 |
| Bst4CI | ACNGT | 1 cut(s) | 491 |
| BstC8I | GCNNGC | 1 cut(s) | 117 |
| BstDEI | CTNAG | 5 cut(s) | 101, 108, 240, 288, 314 |
| BstF5I | GGATG | 1 cut(s) | 352 |
| BstKTI | GATC | 3 cut(s) | 247, 355, 448 |
| BstMAI | GTCTC | 1 cut(s) | 10 |
| BstMBI | GATC | 3 cut(s) | 244, 352, 445 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 194, 298 |
| BstZ17I | GTATAC | 1 cut(s) | 306 |
| Bsu36I | CCTNAGG | 1 cut(s) | 240 |
| BsuRI | GGCC | 2 cut(s) | 197, 235 |
| BtsCI | GGATG | 1 cut(s) | 352 |
| Cac8I | GCNNGC | 1 cut(s) | 117 |
| Cfr13I | GGNCC | 3 cut(s) | 31, 196, 233 |
| CviAII | CATG | 4 cut(s) | 80, 170, 184, 379 |
| CviJI | RGCY | 7 cut(s) | 12, 105, 197, 235, 269, 292, 340 |
| CviKI_1 | RGCY | 7 cut(s) | 12, 105, 197, 235, 269, 292, 340 |
| DdeI | CTNAG | 5 cut(s) | 101, 108, 240, 288, 314 |
| DpnI | GATC | 3 cut(s) | 246, 354, 447 |
| DpnII | GATC | 3 cut(s) | 244, 352, 445 |
| Eco31I | GGTCTC | 1 cut(s) | 10 |
| Eco47I | GGWCC | 1 cut(s) | 31 |
| Eco81I | CCTNAGG | 1 cut(s) | 240 |
| EcoO109I | RGGNCCY | 3 cut(s) | 31, 196, 233 |
| FaeI | CATG | 4 cut(s) | 83, 173, 187, 382 |
| FaiI | YATR | 8 cut(s) | 81, 98, 131, 171, 185, 306, 375, 380 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 140, 172 |
| FatI | CATG | 4 cut(s) | 79, 169, 183, 378 |
| FblI | GTMKAC | 2 cut(s) | 305, 455 |
| FokI | GGATG | 1 cut(s) | 359 |
| FspBI | CTAG | 3 cut(s) | 9, 47, 496 |
| GsuI | CTGGAG | 1 cut(s) | 412 |
| HaeIII | GGCC | 2 cut(s) | 197, 235 |
| Hin1II | CATG | 4 cut(s) | 83, 173, 187, 382 |
| HinfI | GANTC | 2 cut(s) | 394, 452 |
| Hpy166II | GTNNAC | 4 cut(s) | 181, 306, 423, 456 |
| Hpy188I | TCNGA | 1 cut(s) | 289 |
| Hpy188III | TCNNGA | 5 cut(s) | 124, 136, 239, 391, 449 |
| Hpy8I | GTNNAC | 4 cut(s) | 181, 306, 423, 456 |
| HpyCH4III | ACNGT | 1 cut(s) | 491 |
| HpyCH4V | TGCA | 4 cut(s) | 73, 173, 442, 475 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 194, 298 |
| HpyF3I | CTNAG | 5 cut(s) | 101, 108, 240, 288, 314 |
| Hsp92II | CATG | 4 cut(s) | 83, 173, 187, 382 |
| Kzo9I | GATC | 3 cut(s) | 244, 352, 445 |
| LpnPI | CCDG | 7 cut(s) | 179, 197, 252, 296, 376, 411, 428 |
| MaeI | CTAG | 3 cut(s) | 9, 47, 496 |
| MalI | GATC | 3 cut(s) | 246, 354, 447 |
| MboI | GATC | 3 cut(s) | 244, 352, 445 |
| MboII | GAAGA | 2 cut(s) | 272, 362 |
| MluCI | AATT | 3 cut(s) | 74, 219, 223 |
| MlyI | GAGTC | 2 cut(s) | 403, 461 |
| MmeI | TCCRAC | 1 cut(s) | 122 |
| MnlI | CCTC | 6 cut(s) | 22, 44, 209, 235, 246, 424 |
| MseI | TTAA | 3 cut(s) | 222, 254, 384 |
| Mva1269I | GAATGC | 1 cut(s) | 70 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 194, 298 |
| NdeII | GATC | 3 cut(s) | 244, 352, 445 |
| NlaIII | CATG | 4 cut(s) | 83, 173, 187, 382 |
| NlaIV | GGNNCC | 1 cut(s) | 234 |
| PctI | GAATGC | 1 cut(s) | 70 |
| PleI | GAGTC | 2 cut(s) | 402, 460 |
| PpsI | GAGTC | 2 cut(s) | 402, 460 |
| PpuMI | RGGWCCY | 1 cut(s) | 31 |
| PshBI | ATTAAT | 1 cut(s) | 222 |
| Psp5II | RGGWCCY | 1 cut(s) | 31 |
| PspN4I | GGNNCC | 1 cut(s) | 234 |
| PspPI | GGNCC | 3 cut(s) | 31, 196, 233 |
| PspPPI | RGGWCCY | 1 cut(s) | 31 |
| SaqAI | TTAA | 3 cut(s) | 222, 254, 384 |
| Sau3AI | GATC | 3 cut(s) | 244, 352, 445 |
| Sau96I | GGNCC | 3 cut(s) | 31, 196, 233 |
| SchI | GAGTC | 2 cut(s) | 403, 461 |
| SetI | ASST | 5 cut(s) | 33, 107, 271, 294, 416 |
| SinI | GGWCC | 1 cut(s) | 31 |
| SmlI | CTYRAG | 1 cut(s) | 134 |
| SmoI | CTYRAG | 1 cut(s) | 134 |
| SpeI | ACTAGT | 1 cut(s) | 46 |
| Sse9I | AATT | 3 cut(s) | 74, 219, 223 |
| SspMI | CTAG | 3 cut(s) | 9, 47, 496 |
| TaaI | ACNGT | 1 cut(s) | 491 |
| TaqI | TCGA | 2 cut(s) | 27, 201 |
| TasI | AATT | 3 cut(s) | 74, 219, 223 |
| Tru1I | TTAA | 3 cut(s) | 222, 254, 384 |
| Tru9I | TTAA | 3 cut(s) | 222, 254, 384 |
| TspDTI | ATGAA | 5 cut(s) | 68, 85, 158, 279, 362 |
| VpaK11BI | GGWCC | 1 cut(s) | 31 |
| VspI | ATTAAT | 1 cut(s) | 222 |
| XmiI | GTMKAC | 2 cut(s) | 305, 455 |
| XspI | CTAG | 3 cut(s) | 9, 47, 496 |