ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| FAE1_CUT1_RppA | PF08392 | 25 - 309 | 6.3e-112 | FAE1/Type III polyketide synthase-like protein |
| Chal_sti_synt_C | PF02797 | 332 - 413 | 3.1e-09 | Chalcone and stilbene synthases, C-terminal domain |
| ACP_syn_III_C | PF08541 | 333 - 415 | 3.6e-12 | 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1205 |
| Acc65I | GGTACC | 3 cut(s) | 357, 909, 944 |
| AccB1I | GGYRCC | 3 cut(s) | 357, 909, 944 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1275 |
| AccIII | TCCGGA | 1 cut(s) | 491 |
| AciI | CCGC | 2 cut(s) | 612, 931 |
| AcoI | YGGCCR | 1 cut(s) | 519 |
| AfaI | GTAC | 5 cut(s) | 30, 359, 554, 911, 946 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 913, 1170, 1275, 1327 |
| AflII | CTTAAG | 1 cut(s) | 695 |
| AgsI | TTSAA | 7 cut(s) | 217, 366, 484, 547, 715, 721, 985 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 21 |
| AjnI | CCWGG | 4 cut(s) | 353, 534, 912, 1021 |
| AleI | CACNNNNGTG | 1 cut(s) | 1023 |
| AluBI | AGCT | 9 cut(s) | 142, 346, 707, 781, 842, 1059, 1127, 1284, 1365 |
| AluI | AGCT | 9 cut(s) | 142, 346, 707, 781, 842, 1059, 1127, 1284, 1365 |
| Alw21I | GWGCWC | 3 cut(s) | 12, 584, 1008 |
| Alw26I | GTCTC | 2 cut(s) | 78, 409 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1130 |
| Ama87I | CYCGRG | 2 cut(s) | 748, 1082 |
| Aor13HI | TCCGGA | 1 cut(s) | 491 |
| AoxI | GGCC | 3 cut(s) | 105, 519, 993 |
| ApeKI | GCWGC | 8 cut(s) | 54, 501, 504, 836, 839, 928, 1127, 1284 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 332, 364 |
| Asp718I | GGTACC | 3 cut(s) | 357, 909, 944 |
| AspA2I | CCTAGG | 1 cut(s) | 802 |
| AspLEI | GCGC | 1 cut(s) | 509 |
| AsuHPI | GGTGA | 5 cut(s) | 254, 414, 670, 1196, 1261 |
| AvaI | CYCGRG | 2 cut(s) | 748, 1082 |
| AvrII | CCTAGG | 1 cut(s) | 802 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 893, 926, 997, 1030 |
| BanI | GGYRCC | 3 cut(s) | 357, 909, 944 |
| BauI | CACGAG | 1 cut(s) | 392 |
| BbsI | GAAGAC | 1 cut(s) | 728 |
| Bbv12I | GWGCWC | 3 cut(s) | 12, 584, 1008 |
| BbvCI | CCTCAGC | 1 cut(s) | 1361 |
| BbvI | GCAGC | 8 cut(s) | 41, 488, 516, 848, 851, 915, 1114, 1271 |
| BccI | CCATC | 3 cut(s) | 307, 382, 1037 |
| BceAI | ACGGC | 2 cut(s) | 506, 1072 |
| BcgI | CGANNNNNNTGC | 3 cut(s) | 140, 174, 1375 |
| BciT130I | CCWGG | 4 cut(s) | 355, 536, 914, 1023 |
| BciVI | GTATCC | 2 cut(s) | 1025, 1145 |
| BcoDI | GTCTC | 2 cut(s) | 78, 409 |
| BfaI | CTAG | 9 cut(s) | 26, 293, 515, 782, 803, 872, 924, 962, 1092 |
| BfmI | CTRYAG | 1 cut(s) | 502 |
| BfrI | CTTAAG | 1 cut(s) | 695 |
| BfuAI | ACCTGC | 1 cut(s) | 1205 |
| BfuI | GTATCC | 2 cut(s) | 1025, 1145 |
| BisI | GCNGC | 9 cut(s) | 55, 502, 505, 613, 837, 840, 929, 1128, 1285 |
| BlnI | CCTAGG | 1 cut(s) | 802 |
| BlpI | GCTNAGC | 1 cut(s) | 1060 |
| BlsI | GCNGC | 9 cut(s) | 56, 503, 506, 614, 838, 841, 930, 1129, 1286 |
| BmcAI | AGTACT | 1 cut(s) | 30 |
| Bme1390I | CCNGG | 4 cut(s) | 355, 536, 914, 1023 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 21 |
| BmeT110I | CYCGRG | 2 cut(s) | 748, 1082 |
| BmiI | GGNNCC | 4 cut(s) | 359, 597, 911, 946 |
| BmrFI | CCNGG | 4 cut(s) | 355, 536, 914, 1023 |
| BmsI | GCATC | 4 cut(s) | 621, 660, 748, 1255 |
| BpiI | GAAGAC | 1 cut(s) | 728 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1361 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1060 |
| BpuEI | CTTGAG | 1 cut(s) | 1160 |
| BsaI | GGTCTC | 1 cut(s) | 78 |
| BsaJI | CCNNGG | 4 cut(s) | 535, 591, 802, 1021 |
| BsaWI | WCCGGW | 2 cut(s) | 491, 906 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 913, 1170, 1275, 1327 |
| Bse1I | ACTGG | 3 cut(s) | 88, 108, 608 |
| BseAI | TCCGGA | 1 cut(s) | 491 |
| BseBI | CCWGG | 4 cut(s) | 355, 536, 914, 1023 |
| BseDI | CCNNGG | 4 cut(s) | 535, 591, 802, 1021 |
| BseGI | GGATG | 3 cut(s) | 267, 322, 1267 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 913, 1170, 1275, 1327 |
| BseMII | CTCAG | 2 cut(s) | 300, 1375 |
| BseNI | ACTGG | 3 cut(s) | 88, 108, 608 |
| BseRI | GAGGAG | 1 cut(s) | 588 |
| BseXI | GCAGC | 8 cut(s) | 41, 488, 516, 848, 851, 915, 1114, 1271 |
| BseYI | CCCAGC | 1 cut(s) | 1130 |
| BshFI | GGCC | 3 cut(s) | 107, 521, 995 |
| BshNI | GGYRCC | 3 cut(s) | 357, 909, 944 |
| BsiHKAI | GWGCWC | 3 cut(s) | 12, 584, 1008 |
| BsiHKCI | CYCGRG | 2 cut(s) | 748, 1082 |
| BsiSI | CCGG | 4 cut(s) | 234, 492, 907, 996 |
| BslFI | GGGAC | 1 cut(s) | 1268 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 913, 1170, 1275, 1327 |
| BsmAI | GTCTC | 2 cut(s) | 78, 409 |
| BsmFI | GGGAC | 1 cut(s) | 1268 |
| BsmI | GAATGC | 1 cut(s) | 1361 |
| BsnI | GGCC | 3 cut(s) | 107, 521, 995 |
| Bso31I | GGTCTC | 1 cut(s) | 78 |
| BsoBI | CYCGRG | 2 cut(s) | 748, 1082 |
| Bsp1286I | GDGCHC | 3 cut(s) | 12, 584, 1008 |
| Bsp13I | TCCGGA | 1 cut(s) | 491 |
| Bsp143I | GATC | 1 cut(s) | 1078 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1060 |
| Bsp19I | CCATGG | 1 cut(s) | 591 |
| BspACI | CCGC | 2 cut(s) | 612, 931 |
| BspANI | GGCC | 3 cut(s) | 107, 521, 995 |
| BspCNI | CTCAG | 2 cut(s) | 301, 1374 |
| BspEI | TCCGGA | 1 cut(s) | 491 |
| BspLI | GGNNCC | 4 cut(s) | 359, 597, 911, 946 |
| BspMAI | CTGCAG | 1 cut(s) | 506 |
| BspMI | ACCTGC | 1 cut(s) | 1205 |
| BspQI | GCTCTTC | 1 cut(s) | 1024 |
| BspT107I | GGYRCC | 3 cut(s) | 357, 909, 944 |
| BspTI | CTTAAG | 1 cut(s) | 695 |
| BspTNI | GGTCTC | 1 cut(s) | 78 |
| BsrI | ACTGG | 3 cut(s) | 88, 108, 608 |
| BssECI | CCNNGG | 4 cut(s) | 535, 591, 802, 1021 |
| BssMI | GATC | 1 cut(s) | 1078 |
| BssSI | CACGAG | 1 cut(s) | 392 |
| BssT1I | CCWWGG | 2 cut(s) | 591, 802 |
| Bst2BI | CACGAG | 1 cut(s) | 392 |
| Bst2UI | CCWGG | 4 cut(s) | 355, 536, 914, 1023 |
| Bst4CI | ACNGT | 2 cut(s) | 452, 644 |
| Bst6I | CTCTTC | 1 cut(s) | 1024 |
| BstAFI | CTTAAG | 1 cut(s) | 695 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 845 |
| BstC8I | GCNNGC | 1 cut(s) | 511 |
| BstDEI | CTNAG | 4 cut(s) | 309, 893, 1060, 1361 |
| BstDSI | CCRYGG | 1 cut(s) | 591 |
| BstEII | GGTNACC | 1 cut(s) | 797 |
| BstF5I | GGATG | 3 cut(s) | 267, 322, 1267 |
| BstHHI | GCGC | 1 cut(s) | 509 |
| BstKTI | GATC | 1 cut(s) | 1081 |
| BstMAI | GTCTC | 2 cut(s) | 78, 409 |
| BstMBI | GATC | 1 cut(s) | 1078 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 293, 510, 845 |
| BstNI | CCWGG | 4 cut(s) | 355, 536, 914, 1023 |
| BstPI | GGTNACC | 1 cut(s) | 797 |
| BstSCI | CCNGG | 4 cut(s) | 353, 534, 912, 1021 |
| BstSFI | CTRYAG | 1 cut(s) | 502 |
| BstV1I | GCAGC | 8 cut(s) | 41, 488, 516, 848, 851, 915, 1114, 1271 |
| BstV2I | GAAGAC | 1 cut(s) | 728 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1025 |
| BsuI | GTATCC | 2 cut(s) | 1025, 1145 |
| BsuRI | GGCC | 3 cut(s) | 107, 521, 995 |
| BtgI | CCRYGG | 1 cut(s) | 591 |
| BtsCI | GGATG | 3 cut(s) | 267, 322, 1267 |
| BtsIMutI | CAGTG | 2 cut(s) | 95, 601 |
| BveI | ACCTGC | 1 cut(s) | 1205 |
| Cac8I | GCNNGC | 1 cut(s) | 511 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1130 |
| CfoI | GCGC | 1 cut(s) | 509 |
| CsiI | ACCWGGT | 1 cut(s) | 912 |
| Csp6I | GTAC | 5 cut(s) | 29, 358, 553, 910, 945 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 498, 533 |
| CviAII | CATG | 8 cut(s) | 136, 156, 172, 409, 592, 628, 1156, 1327 |
| CviQI | GTAC | 5 cut(s) | 29, 358, 553, 910, 945 |
| DdeI | CTNAG | 4 cut(s) | 309, 893, 1060, 1361 |
| DpnI | GATC | 1 cut(s) | 1080 |
| DpnII | GATC | 1 cut(s) | 1078 |
| DriI | GACNNNNNGTC | 1 cut(s) | 21 |
| EaeI | YGGCCR | 1 cut(s) | 519 |
| Eam1104I | CTCTTC | 1 cut(s) | 1024 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 21 |
| EarI | CTCTTC | 1 cut(s) | 1024 |
| Eco130I | CCWWGG | 2 cut(s) | 591, 802 |
| Eco31I | GGTCTC | 1 cut(s) | 78 |
| Eco88I | CYCGRG | 2 cut(s) | 748, 1082 |
| Eco91I | GGTNACC | 1 cut(s) | 797 |
| EcoO65I | GGTNACC | 1 cut(s) | 797 |
| EcoRII | CCWGG | 4 cut(s) | 353, 534, 912, 1021 |
| EcoT14I | CCWWGG | 2 cut(s) | 591, 802 |
| ErhI | CCWWGG | 2 cut(s) | 591, 802 |
| FaeI | CATG | 8 cut(s) | 139, 159, 175, 412, 595, 631, 1159, 1330 |
| FaqI | GGGAC | 1 cut(s) | 1268 |
| FatI | CATG | 8 cut(s) | 135, 155, 171, 408, 591, 627, 1155, 1326 |
| Fnu4HI | GCNGC | 9 cut(s) | 55, 502, 505, 613, 837, 840, 929, 1128, 1285 |
| FokI | GGATG | 3 cut(s) | 254, 329, 1274 |
| Fsp4HI | GCNGC | 9 cut(s) | 55, 502, 505, 613, 837, 840, 929, 1128, 1285 |
| FspBI | CTAG | 9 cut(s) | 26, 293, 515, 782, 803, 872, 924, 962, 1092 |
| GlaI | GCGC | 1 cut(s) | 508 |
| GluI | GCNGC | 9 cut(s) | 55, 502, 505, 613, 837, 840, 929, 1128, 1285 |
| GsaI | CCCAGC | 1 cut(s) | 1134 |
| HaeIII | GGCC | 3 cut(s) | 107, 521, 995 |
| HapII | CCGG | 4 cut(s) | 234, 492, 907, 996 |
| HhaI | GCGC | 1 cut(s) | 509 |
| Hin1II | CATG | 8 cut(s) | 139, 159, 175, 412, 595, 631, 1159, 1330 |
| Hin6I | GCGC | 1 cut(s) | 507 |
| HinP1I | GCGC | 1 cut(s) | 507 |
| HindIII | AAGCTT | 1 cut(s) | 344 |
| HinfI | GANTC | 7 cut(s) | 152, 184, 299, 560, 587, 920, 1192 |
| HpaII | CCGG | 4 cut(s) | 234, 492, 907, 996 |
| HphI | GGTGA | 5 cut(s) | 254, 414, 670, 1196, 1261 |
| Hpy166II | GTNNAC | 2 cut(s) | 448, 678 |
| Hpy188I | TCNGA | 2 cut(s) | 310, 1109 |
| Hpy8I | GTNNAC | 2 cut(s) | 448, 678 |
| HpyAV | CCTTC | 4 cut(s) | 372, 429, 985, 1174 |
| HpyCH4III | ACNGT | 2 cut(s) | 452, 644 |
| HpyCH4V | TGCA | 5 cut(s) | 175, 504, 774, 1227, 1287 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 293, 510, 845 |
| HpyF3I | CTNAG | 4 cut(s) | 309, 893, 1060, 1361 |
| Hsp92II | CATG | 8 cut(s) | 139, 159, 175, 412, 595, 631, 1159, 1330 |
| HspAI | GCGC | 1 cut(s) | 507 |
| Kpn2I | TCCGGA | 1 cut(s) | 491 |
| KpnI | GGTACC | 3 cut(s) | 361, 913, 948 |
| Kzo9I | GATC | 1 cut(s) | 1078 |
| LguI | GCTCTTC | 1 cut(s) | 1024 |
| LmnI | GCTCC | 3 cut(s) | 147, 601, 1211 |
| Lsp1109I | GCAGC | 8 cut(s) | 41, 488, 516, 848, 851, 915, 1114, 1271 |
| LweI | GCATC | 4 cut(s) | 621, 660, 748, 1255 |
| MabI | ACCWGGT | 1 cut(s) | 912 |
| MaeI | CTAG | 9 cut(s) | 26, 293, 515, 782, 803, 872, 924, 962, 1092 |
| MaeIII | GTNAC | 4 cut(s) | 452, 797, 1115, 1295 |
| MalI | GATC | 1 cut(s) | 1080 |
| MboI | GATC | 1 cut(s) | 1078 |
| MboII | GAAGA | 6 cut(s) | 209, 699, 733, 797, 946, 1041 |
| MfeI | CAATTG | 1 cut(s) | 766 |
| MhlI | GDGCHC | 3 cut(s) | 12, 584, 1008 |
| MluCI | AATT | 4 cut(s) | 229, 716, 766, 1388 |
| MlyI | GAGTC | 4 cut(s) | 146, 554, 596, 929 |
| MmeI | TCCRAC | 1 cut(s) | 952 |
| MroI | TCCGGA | 1 cut(s) | 491 |
| MseI | TTAA | 6 cut(s) | 63, 696, 1067, 1221, 1347, 1399 |
| MslI | CAYNNNNRTG | 2 cut(s) | 392, 1023 |
| MspA1I | CMGCKG | 1 cut(s) | 1127 |
| MspCI | CTTAAG | 1 cut(s) | 695 |
| MspI | CCGG | 4 cut(s) | 234, 492, 907, 996 |
| MspR9I | CCNGG | 4 cut(s) | 355, 536, 914, 1023 |
| MunI | CAATTG | 1 cut(s) | 766 |
| Mva1269I | GAATGC | 1 cut(s) | 1361 |
| MvaI | CCWGG | 4 cut(s) | 355, 536, 914, 1023 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 293, 510, 845 |
| NcoI | CCATGG | 1 cut(s) | 591 |
| NdeII | GATC | 1 cut(s) | 1078 |
| NlaIII | CATG | 8 cut(s) | 139, 159, 175, 412, 595, 631, 1159, 1330 |
| NlaIV | GGNNCC | 4 cut(s) | 359, 597, 911, 946 |
| NmeAIII | GCCGAG | 1 cut(s) | 305 |
| OliI | CACNNNNGTG | 1 cut(s) | 1023 |
| PaeR7I | CTCGAG | 2 cut(s) | 748, 1082 |
| PciSI | GCTCTTC | 1 cut(s) | 1024 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 390 |
| PctI | GAATGC | 1 cut(s) | 1361 |
| PfeI | GAWTC | 3 cut(s) | 184, 299, 1192 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1275 |
| PkrI | GCNGC | 9 cut(s) | 56, 503, 506, 614, 838, 841, 930, 1129, 1286 |
| PleI | GAGTC | 4 cut(s) | 146, 554, 595, 928 |
| PpsI | GAGTC | 4 cut(s) | 146, 554, 595, 928 |
| Psp6I | CCWGG | 4 cut(s) | 353, 534, 912, 1021 |
| PspEI | GGTNACC | 1 cut(s) | 797 |
| PspFI | CCCAGC | 1 cut(s) | 1130 |
| PspGI | CCWGG | 4 cut(s) | 353, 534, 912, 1021 |
| PspN4I | GGNNCC | 4 cut(s) | 359, 597, 911, 946 |
| PspXI | VCTCGAGB | 1 cut(s) | 748 |
| PstI | CTGCAG | 1 cut(s) | 506 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1130 |
| PvuII | CAGCTG | 1 cut(s) | 1127 |
| RsaI | GTAC | 5 cut(s) | 30, 359, 554, 911, 946 |
| RsaNI | GTAC | 5 cut(s) | 29, 358, 553, 910, 945 |
| RseI | CAYNNNNRTG | 2 cut(s) | 392, 1023 |
| SapI | GCTCTTC | 1 cut(s) | 1024 |
| SaqAI | TTAA | 6 cut(s) | 63, 696, 1067, 1221, 1347, 1399 |
| SatI | GCNGC | 9 cut(s) | 55, 502, 505, 613, 837, 840, 929, 1128, 1285 |
| Sau3AI | GATC | 1 cut(s) | 1078 |
| ScaI | AGTACT | 1 cut(s) | 30 |
| SchI | GAGTC | 4 cut(s) | 146, 554, 596, 929 |
| ScrFI | CCNGG | 4 cut(s) | 355, 536, 914, 1023 |
| SduI | GDGCHC | 3 cut(s) | 12, 584, 1008 |
| SexAI | ACCWGGT | 1 cut(s) | 912 |
| SfaNI | GCATC | 4 cut(s) | 621, 660, 748, 1255 |
| SfcI | CTRYAG | 1 cut(s) | 502 |
| Sfr274I | CTCGAG | 2 cut(s) | 748, 1082 |
| SlaI | CTCGAG | 2 cut(s) | 748, 1082 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 392, 1023 |
| SmlI | CTYRAG | 4 cut(s) | 695, 748, 1082, 1175 |
| SmoI | CTYRAG | 4 cut(s) | 695, 748, 1082, 1175 |
| Sse9I | AATT | 4 cut(s) | 229, 716, 766, 1388 |
| SsiI | CCGC | 2 cut(s) | 612, 931 |
| SspI | AATATT | 1 cut(s) | 1234 |
| SspMI | CTAG | 9 cut(s) | 26, 293, 515, 782, 803, 872, 924, 962, 1092 |
| StyD4I | CCNGG | 4 cut(s) | 353, 534, 912, 1021 |
| StyI | CCWWGG | 2 cut(s) | 591, 802 |
| TaaI | ACNGT | 2 cut(s) | 452, 644 |
| TaqI | TCGA | 7 cut(s) | 330, 384, 439, 668, 749, 811, 1083 |
| TaqII | GACCGA | 1 cut(s) | 642 |
| TasI | AATT | 4 cut(s) | 229, 716, 766, 1388 |
| TatI | WGTACW | 1 cut(s) | 28 |
| TauI | GCSGC | 1 cut(s) | 615 |
| TfiI | GAWTC | 3 cut(s) | 184, 299, 1192 |
| Tru1I | TTAA | 6 cut(s) | 63, 696, 1067, 1221, 1347, 1399 |
| Tru9I | TTAA | 6 cut(s) | 63, 696, 1067, 1221, 1347, 1399 |
| TscAI | CASTG | 2 cut(s) | 95, 608 |
| TseI | GCWGC | 8 cut(s) | 54, 501, 504, 836, 839, 928, 1127, 1284 |
| TspDTI | ATGAA | 5 cut(s) | 152, 333, 1004, 1315, 1368 |
| TspRI | CASTG | 2 cut(s) | 95, 608 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1275 |
| Vha464I | CTTAAG | 1 cut(s) | 695 |
| XbaI | TCTAGA | 1 cut(s) | 1091 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1324 |
| XhoI | CTCGAG | 2 cut(s) | 748, 1082 |
| XmaJI | CCTAGG | 1 cut(s) | 802 |
| XspI | CTAG | 9 cut(s) | 26, 293, 515, 782, 803, 872, 924, 962, 1092 |
| ZrmI | AGTACT | 1 cut(s) | 30 |