Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 235 - 334 | 1.8e-18 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 300 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 469 |
| AccI | GTMKAC | 1 cut(s) | 473 |
| AccII | CGCG | 1 cut(s) | 966 |
| AciI | CCGC | 5 cut(s) | 58, 446, 761, 983, 1058 |
| AclWI | GGATC | 1 cut(s) | 225 |
| AcsI | RAATTY | 3 cut(s) | 73, 172, 247 |
| AcuI | CTGAAG | 3 cut(s) | 452, 785, 887 |
| AfaI | GTAC | 1 cut(s) | 915 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 580, 1075 |
| AgsI | TTSAA | 2 cut(s) | 708, 863 |
| AjnI | CCWGG | 1 cut(s) | 319 |
| AluBI | AGCT | 5 cut(s) | 242, 458, 647, 799, 995 |
| AluI | AGCT | 5 cut(s) | 242, 458, 647, 799, 995 |
| Alw21I | GWGCWC | 3 cut(s) | 142, 541, 1054 |
| Alw44I | GTGCAC | 2 cut(s) | 537, 1050 |
| AlwI | GGATC | 1 cut(s) | 225 |
| Ama87I | CYCGRG | 1 cut(s) | 1068 |
| AoxI | GGCC | 5 cut(s) | 32, 163, 317, 777, 1081 |
| ApaLI | GTGCAC | 2 cut(s) | 537, 1050 |
| ApeKI | GCWGC | 2 cut(s) | 242, 614 |
| ApoI | RAATTY | 3 cut(s) | 73, 172, 247 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 355 |
| AspLEI | GCGC | 1 cut(s) | 663 |
| AspS9I | GGNCC | 2 cut(s) | 163, 380 |
| AsuHPI | GGTGA | 2 cut(s) | 79, 955 |
| AvaI | CYCGRG | 1 cut(s) | 1068 |
| AvaII | GGWCC | 1 cut(s) | 380 |
| BaeGI | GKGCMC | 2 cut(s) | 541, 1054 |
| BanII | GRGCYC | 2 cut(s) | 691, 769 |
| BbsI | GAAGAC | 2 cut(s) | 600, 888 |
| Bbv12I | GWGCWC | 3 cut(s) | 142, 541, 1054 |
| BbvI | GCAGC | 2 cut(s) | 229, 626 |
| BccI | CCATC | 3 cut(s) | 57, 267, 617 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 921, 955 |
| BciT130I | CCWGG | 1 cut(s) | 321 |
| BclI | TGATCA | 1 cut(s) | 730 |
| BfmI | CTRYAG | 1 cut(s) | 450 |
| BisI | GCNGC | 3 cut(s) | 243, 615, 1059 |
| BlpI | GCTNAGC | 1 cut(s) | 795 |
| BlsI | GCNGC | 3 cut(s) | 244, 616, 1060 |
| Bme1390I | CCNGG | 1 cut(s) | 321 |
| Bme18I | GGWCC | 1 cut(s) | 380 |
| BmeT110I | CYCGRG | 1 cut(s) | 1068 |
| BmgT120I | GGNCC | 2 cut(s) | 163, 380 |
| BmrFI | CCNGG | 1 cut(s) | 321 |
| BmsI | GCATC | 3 cut(s) | 409, 839, 941 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1038 |
| BpiI | GAAGAC | 2 cut(s) | 600, 888 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 795 |
| BsaJI | CCNNGG | 2 cut(s) | 320, 917 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 580, 1075 |
| Bse1I | ACTGG | 3 cut(s) | 106, 179, 515 |
| BseBI | CCWGG | 1 cut(s) | 321 |
| BseDI | CCNNGG | 2 cut(s) | 320, 917 |
| BseGI | GGATG | 3 cut(s) | 227, 559, 628 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 580, 1075 |
| BseMII | CTCAG | 1 cut(s) | 786 |
| BseNI | ACTGG | 3 cut(s) | 106, 179, 515 |
| BseSI | GKGCMC | 2 cut(s) | 541, 1054 |
| BseXI | GCAGC | 2 cut(s) | 229, 626 |
| Bsh1236I | CGCG | 1 cut(s) | 966 |
| BshFI | GGCC | 5 cut(s) | 34, 165, 319, 779, 1083 |
| BsiHKAI | GWGCWC | 3 cut(s) | 142, 541, 1054 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1068 |
| BslFI | GGGAC | 1 cut(s) | 1046 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 580, 1075 |
| BsmFI | GGGAC | 1 cut(s) | 1046 |
| BsmI | GAATGC | 1 cut(s) | 703 |
| BsnI | GGCC | 5 cut(s) | 34, 165, 319, 779, 1083 |
| BsoBI | CYCGRG | 1 cut(s) | 1068 |
| Bsp1286I | GDGCHC | 5 cut(s) | 142, 541, 691, 769, 1054 |
| Bsp143I | GATC | 2 cut(s) | 217, 730 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 795 |
| Bsp19I | CCATGG | 1 cut(s) | 917 |
| Bsp68I | TCGCGA | 1 cut(s) | 966 |
| BspACI | CCGC | 5 cut(s) | 58, 446, 761, 983, 1058 |
| BspANI | GGCC | 5 cut(s) | 34, 165, 319, 779, 1083 |
| BspCNI | CTCAG | 1 cut(s) | 787 |
| BspFNI | CGCG | 1 cut(s) | 966 |
| BspHI | TCATGA | 1 cut(s) | 403 |
| BspMAI | CTGCAG | 1 cut(s) | 454 |
| BspPI | GGATC | 1 cut(s) | 225 |
| BsrI | ACTGG | 3 cut(s) | 106, 179, 515 |
| BssECI | CCNNGG | 2 cut(s) | 320, 917 |
| BssMI | GATC | 2 cut(s) | 217, 730 |
| BssT1I | CCWWGG | 1 cut(s) | 917 |
| Bst2UI | CCWGG | 1 cut(s) | 321 |
| Bst4CI | ACNGT | 4 cut(s) | 43, 118, 288, 637 |
| Bst6I | CTCTTC | 3 cut(s) | 238, 346, 906 |
| BstC8I | GCNNGC | 3 cut(s) | 450, 930, 1081 |
| BstDEI | CTNAG | 1 cut(s) | 795 |
| BstDSI | CCRYGG | 1 cut(s) | 917 |
| BstEII | GGTNACC | 1 cut(s) | 565 |
| BstF5I | GGATG | 3 cut(s) | 227, 559, 628 |
| BstFNI | CGCG | 1 cut(s) | 966 |
| BstHHI | GCGC | 1 cut(s) | 663 |
| BstKTI | GATC | 2 cut(s) | 220, 733 |
| BstMBI | GATC | 2 cut(s) | 217, 730 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 536, 1058 |
| BstNI | CCWGG | 1 cut(s) | 321 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1038 |
| BstPI | GGTNACC | 1 cut(s) | 565 |
| BstSCI | CCNGG | 1 cut(s) | 319 |
| BstSFI | CTRYAG | 1 cut(s) | 450 |
| BstSLI | GKGCMC | 2 cut(s) | 541, 1054 |
| BstUI | CGCG | 1 cut(s) | 966 |
| BstV1I | GCAGC | 2 cut(s) | 229, 626 |
| BstV2I | GAAGAC | 2 cut(s) | 600, 888 |
| BstX2I | RGATCY | 1 cut(s) | 217 |
| BstYI | RGATCY | 1 cut(s) | 217 |
| BsuRI | GGCC | 5 cut(s) | 34, 165, 319, 779, 1083 |
| BtgI | CCRYGG | 1 cut(s) | 917 |
| BtsCI | GGATG | 3 cut(s) | 227, 559, 628 |
| BtsI | GCAGTG | 1 cut(s) | 813 |
| BtsIMutI | CAGTG | 3 cut(s) | 48, 522, 813 |
| BtuMI | TCGCGA | 1 cut(s) | 966 |
| Cac8I | GCNNGC | 3 cut(s) | 450, 930, 1081 |
| CciI | TCATGA | 1 cut(s) | 403 |
| CfoI | GCGC | 1 cut(s) | 663 |
| Cfr13I | GGNCC | 2 cut(s) | 163, 380 |
| Csp6I | GTAC | 1 cut(s) | 914 |
| CviAII | CATG | 3 cut(s) | 404, 815, 918 |
| CviQI | GTAC | 1 cut(s) | 914 |
| DdeI | CTNAG | 1 cut(s) | 795 |
| DpnI | GATC | 2 cut(s) | 219, 732 |
| DpnII | GATC | 2 cut(s) | 217, 730 |
| DraI | TTTAAA | 1 cut(s) | 657 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 469 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 469 |
| Eam1104I | CTCTTC | 3 cut(s) | 238, 346, 906 |
| EarI | CTCTTC | 3 cut(s) | 238, 346, 906 |
| EciI | GGCGGA | 1 cut(s) | 435 |
| Eco130I | CCWWGG | 1 cut(s) | 917 |
| Eco147I | AGGCCT | 1 cut(s) | 1083 |
| Eco24I | GRGCYC | 2 cut(s) | 691, 769 |
| Eco32I | GATATC | 1 cut(s) | 346 |
| Eco47I | GGWCC | 1 cut(s) | 380 |
| Eco57I | CTGAAG | 3 cut(s) | 452, 785, 887 |
| Eco88I | CYCGRG | 1 cut(s) | 1068 |
| Eco91I | GGTNACC | 1 cut(s) | 565 |
| EcoO65I | GGTNACC | 1 cut(s) | 565 |
| EcoRII | CCWGG | 1 cut(s) | 319 |
| EcoRV | GATATC | 1 cut(s) | 346 |
| EcoT14I | CCWWGG | 1 cut(s) | 917 |
| EcoT38I | GRGCYC | 2 cut(s) | 691, 769 |
| ErhI | CCWWGG | 1 cut(s) | 917 |
| FaeI | CATG | 3 cut(s) | 407, 818, 921 |
| FaqI | GGGAC | 1 cut(s) | 1046 |
| FatI | CATG | 3 cut(s) | 403, 814, 917 |
| FauI | CCCGC | 1 cut(s) | 754 |
| FbaI | TGATCA | 1 cut(s) | 730 |
| FblI | GTMKAC | 1 cut(s) | 473 |
| Fnu4HI | GCNGC | 3 cut(s) | 243, 615, 1059 |
| FokI | GGATG | 3 cut(s) | 214, 566, 635 |
| FriOI | GRGCYC | 2 cut(s) | 691, 769 |
| Fsp4HI | GCNGC | 3 cut(s) | 243, 615, 1059 |
| GlaI | GCGC | 1 cut(s) | 662 |
| GluI | GCNGC | 3 cut(s) | 243, 615, 1059 |
| HaeIII | GGCC | 5 cut(s) | 34, 165, 319, 779, 1083 |
| HhaI | GCGC | 1 cut(s) | 663 |
| Hin1II | CATG | 3 cut(s) | 407, 818, 921 |
| Hin6I | GCGC | 1 cut(s) | 661 |
| HinP1I | GCGC | 1 cut(s) | 661 |
| HinfI | GANTC | 3 cut(s) | 811, 869, 1034 |
| HphI | GGTGA | 2 cut(s) | 79, 955 |
| Hpy166II | GTNNAC | 3 cut(s) | 474, 539, 1052 |
| Hpy188I | TCNGA | 2 cut(s) | 350, 906 |
| Hpy188III | TCNNGA | 4 cut(s) | 269, 404, 965, 1068 |
| Hpy8I | GTNNAC | 3 cut(s) | 474, 539, 1052 |
| HpyAV | CCTTC | 3 cut(s) | 544, 962, 1094 |
| HpyCH4III | ACNGT | 4 cut(s) | 43, 118, 288, 637 |
| HpyCH4IV | ACGT | 1 cut(s) | 476 |
| HpyCH4V | TGCA | 6 cut(s) | 291, 452, 539, 830, 932, 1052 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 536, 1058 |
| HpyF3I | CTNAG | 1 cut(s) | 795 |
| HpySE526I | ACGT | 1 cut(s) | 476 |
| Hsp92II | CATG | 3 cut(s) | 407, 818, 921 |
| HspAI | GCGC | 1 cut(s) | 661 |
| Ksp22I | TGATCA | 1 cut(s) | 730 |
| Kzo9I | GATC | 2 cut(s) | 217, 730 |
| LmnI | GCTCC | 1 cut(s) | 145 |
| Lsp1109I | GCAGC | 2 cut(s) | 229, 626 |
| LweI | GCATC | 3 cut(s) | 409, 839, 941 |
| MaeII | ACGT | 1 cut(s) | 476 |
| MaeIII | GTNAC | 3 cut(s) | 522, 565, 866 |
| MalI | GATC | 2 cut(s) | 219, 732 |
| MboI | GATC | 2 cut(s) | 217, 730 |
| MboII | GAAGA | 9 cut(s) | 10, 191, 225, 300, 363, 474, 605, 888, 893 |
| MflI | RGATCY | 1 cut(s) | 217 |
| MhlI | GDGCHC | 5 cut(s) | 142, 541, 691, 769, 1054 |
| MluCI | AATT | 8 cut(s) | 73, 172, 247, 292, 387, 882, 997, 1090 |
| MlyI | GAGTC | 2 cut(s) | 863, 1028 |
| MnlI | CCTC | 8 cut(s) | 145, 241, 347, 426, 556, 581, 784, 1053 |
| MroXI | GAANNNNTTC | 1 cut(s) | 355 |
| MseI | TTAA | 6 cut(s) | 186, 204, 224, 437, 632, 656 |
| MspR9I | CCNGG | 1 cut(s) | 321 |
| Mva1269I | GAATGC | 1 cut(s) | 703 |
| MvaI | CCWGG | 1 cut(s) | 321 |
| MvnI | CGCG | 1 cut(s) | 966 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 536, 1058 |
| NcoI | CCATGG | 1 cut(s) | 917 |
| NdeII | GATC | 2 cut(s) | 217, 730 |
| NlaIII | CATG | 3 cut(s) | 407, 818, 921 |
| NmeAIII | GCCGAG | 1 cut(s) | 851 |
| NmuCI | GTSAC | 1 cut(s) | 866 |
| NruI | TCGCGA | 1 cut(s) | 966 |
| PagI | TCATGA | 1 cut(s) | 403 |
| PceI | AGGCCT | 1 cut(s) | 1083 |
| PctI | GAATGC | 1 cut(s) | 703 |
| PdmI | GAANNNNTTC | 1 cut(s) | 355 |
| PfeI | GAWTC | 1 cut(s) | 811 |
| PkrI | GCNGC | 3 cut(s) | 244, 616, 1060 |
| PleI | GAGTC | 2 cut(s) | 863, 1028 |
| PpsI | GAGTC | 2 cut(s) | 863, 1028 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1038 |
| PsiI | TTATAA | 1 cut(s) | 300 |
| Psp6I | CCWGG | 1 cut(s) | 319 |
| PspEI | GGTNACC | 1 cut(s) | 565 |
| PspGI | CCWGG | 1 cut(s) | 319 |
| PspPI | GGNCC | 2 cut(s) | 163, 380 |
| PstI | CTGCAG | 1 cut(s) | 454 |
| PsuI | RGATCY | 1 cut(s) | 217 |
| RruI | TCGCGA | 1 cut(s) | 966 |
| RsaI | GTAC | 1 cut(s) | 915 |
| RsaNI | GTAC | 1 cut(s) | 914 |
| SaqAI | TTAA | 6 cut(s) | 186, 204, 224, 437, 632, 656 |
| SatI | GCNGC | 3 cut(s) | 243, 615, 1059 |
| Sau3AI | GATC | 2 cut(s) | 217, 730 |
| Sau96I | GGNCC | 2 cut(s) | 163, 380 |
| SchI | GAGTC | 2 cut(s) | 863, 1028 |
| ScrFI | CCNGG | 1 cut(s) | 321 |
| SduI | GDGCHC | 5 cut(s) | 142, 541, 691, 769, 1054 |
| SfaNI | GCATC | 3 cut(s) | 409, 839, 941 |
| SfcI | CTRYAG | 1 cut(s) | 450 |
| SinI | GGWCC | 1 cut(s) | 380 |
| Sse9I | AATT | 8 cut(s) | 73, 172, 247, 292, 387, 882, 997, 1090 |
| SseBI | AGGCCT | 1 cut(s) | 1083 |
| SsiI | CCGC | 5 cut(s) | 58, 446, 761, 983, 1058 |
| SspI | AATATT | 1 cut(s) | 442 |
| StuI | AGGCCT | 1 cut(s) | 1083 |
| StyD4I | CCNGG | 1 cut(s) | 319 |
| StyI | CCWWGG | 1 cut(s) | 917 |
| TaaI | ACNGT | 4 cut(s) | 43, 118, 288, 637 |
| TaiI | ACGT | 1 cut(s) | 479 |
| TasI | AATT | 8 cut(s) | 73, 172, 247, 292, 387, 882, 997, 1090 |
| TauI | GCSGC | 1 cut(s) | 1061 |
| TfiI | GAWTC | 1 cut(s) | 811 |
| Tru1I | TTAA | 6 cut(s) | 186, 204, 224, 437, 632, 656 |
| Tru9I | TTAA | 6 cut(s) | 186, 204, 224, 437, 632, 656 |
| TscAI | CASTG | 3 cut(s) | 48, 522, 813 |
| TseFI | GTSAC | 1 cut(s) | 866 |
| TseI | GCWGC | 2 cut(s) | 242, 614 |
| Tsp45I | GTSAC | 1 cut(s) | 866 |
| TspDTI | ATGAA | 8 cut(s) | 10, 474, 478, 482, 803, 812, 875, 1013 |
| TspRI | CASTG | 3 cut(s) | 48, 522, 813 |
| VneI | GTGCAC | 2 cut(s) | 537, 1050 |
| VpaK11BI | GGWCC | 1 cut(s) | 380 |
| XapI | RAATTY | 3 cut(s) | 73, 172, 247 |
| XmiI | GTMKAC | 1 cut(s) | 473 |
| XmnI | GAANNNNTTC | 1 cut(s) | 355 |