ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 3 cut(s) | 59, 152, 158 |
| AatII | GACGTC | 2 cut(s) | 156, 162 |
| AccI | GTMKAC | 5 cut(s) | 38, 80, 96, 156, 162 |
| AclWI | GGATC | 2 cut(s) | 325, 338 |
| AcoI | YGGCCR | 1 cut(s) | 302 |
| AcuI | CTGAAG | 1 cut(s) | 198 |
| AcyI | GRCGYC | 2 cut(s) | 153, 159 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 319 |
| AflIII | ACRYGT | 1 cut(s) | 123 |
| AgsI | TTSAA | 3 cut(s) | 20, 185, 456 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 20 |
| AjnI | CCWGG | 1 cut(s) | 333 |
| AluBI | AGCT | 2 cut(s) | 257, 427 |
| AluI | AGCT | 2 cut(s) | 257, 427 |
| AlwI | GGATC | 2 cut(s) | 325, 338 |
| AoxI | GGCC | 1 cut(s) | 302 |
| ApeKI | GCWGC | 1 cut(s) | 467 |
| AseI | ATTAAT | 1 cut(s) | 389 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 390 |
| AsuHPI | GGTGA | 1 cut(s) | 392 |
| BamHI | GGATCC | 1 cut(s) | 330 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 180, 212, 411, 443 |
| BbsI | GAAGAC | 1 cut(s) | 150 |
| BbvI | GCAGC | 1 cut(s) | 454 |
| BccI | CCATC | 1 cut(s) | 335 |
| BciT130I | CCWGG | 1 cut(s) | 335 |
| BfaI | CTAG | 2 cut(s) | 12, 474 |
| BisI | GCNGC | 1 cut(s) | 468 |
| BlsI | GCNGC | 1 cut(s) | 469 |
| Bme1390I | CCNGG | 1 cut(s) | 335 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 20 |
| BmiI | GGNNCC | 2 cut(s) | 332, 450 |
| BmrFI | CCNGG | 1 cut(s) | 335 |
| BmsI | GCATC | 1 cut(s) | 297 |
| BpiI | GAAGAC | 1 cut(s) | 150 |
| BsaHI | GRCGYC | 2 cut(s) | 153, 159 |
| BsaJI | CCNNGG | 1 cut(s) | 334 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 319 |
| Bse1I | ACTGG | 1 cut(s) | 34 |
| Bse3DI | GCAATG | 1 cut(s) | 332 |
| BseBI | CCWGG | 1 cut(s) | 335 |
| BseDI | CCNNGG | 1 cut(s) | 334 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 319 |
| BseMI | GCAATG | 1 cut(s) | 332 |
| BseMII | CTCAG | 1 cut(s) | 278 |
| BseNI | ACTGG | 1 cut(s) | 34 |
| BseXI | GCAGC | 1 cut(s) | 454 |
| BshFI | GGCC | 1 cut(s) | 304 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 319 |
| BsnI | GGCC | 1 cut(s) | 304 |
| Bsp143I | GATC | 1 cut(s) | 330 |
| BspANI | GGCC | 1 cut(s) | 304 |
| BspCNI | CTCAG | 1 cut(s) | 277 |
| BspLI | GGNNCC | 2 cut(s) | 332, 450 |
| BspPI | GGATC | 2 cut(s) | 325, 338 |
| BsrDI | GCAATG | 1 cut(s) | 332 |
| BsrI | ACTGG | 1 cut(s) | 34 |
| BssECI | CCNNGG | 1 cut(s) | 334 |
| BssMI | GATC | 1 cut(s) | 330 |
| BssNI | GRCGYC | 2 cut(s) | 153, 159 |
| Bst2UI | CCWGG | 1 cut(s) | 335 |
| Bst4CI | ACNGT | 1 cut(s) | 78 |
| BstACI | GRCGYC | 2 cut(s) | 153, 159 |
| BstDEI | CTNAG | 1 cut(s) | 264 |
| BstKTI | GATC | 1 cut(s) | 333 |
| BstMBI | GATC | 1 cut(s) | 330 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 476 |
| BstNI | CCWGG | 1 cut(s) | 335 |
| BstNSI | RCATGY | 1 cut(s) | 127 |
| BstSCI | CCNGG | 1 cut(s) | 333 |
| BstV1I | GCAGC | 1 cut(s) | 454 |
| BstV2I | GAAGAC | 1 cut(s) | 150 |
| BstX2I | RGATCY | 1 cut(s) | 330 |
| BstYI | RGATCY | 1 cut(s) | 330 |
| BsuRI | GGCC | 1 cut(s) | 304 |
| CviAII | CATG | 1 cut(s) | 124 |
| CviJI | RGCY | 7 cut(s) | 203, 257, 283, 304, 427, 449, 467 |
| CviKI_1 | RGCY | 7 cut(s) | 203, 257, 283, 304, 427, 449, 467 |
| DdeI | CTNAG | 1 cut(s) | 264 |
| DpnI | GATC | 1 cut(s) | 332 |
| DpnII | GATC | 1 cut(s) | 330 |
| DraI | TTTAAA | 1 cut(s) | 291 |
| DrdI | GACNNNNNNGTC | 3 cut(s) | 59, 152, 158 |
| DriI | GACNNNNNGTC | 1 cut(s) | 20 |
| DseDI | GACNNNNNNGTC | 3 cut(s) | 59, 152, 158 |
| EaeI | YGGCCR | 1 cut(s) | 302 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 20 |
| Eco57I | CTGAAG | 1 cut(s) | 198 |
| EcoRII | CCWGG | 1 cut(s) | 333 |
| FaeI | CATG | 1 cut(s) | 127 |
| FaiI | YATR | 6 cut(s) | 125, 197, 280, 301, 408, 446 |
| FatI | CATG | 1 cut(s) | 123 |
| FblI | GTMKAC | 5 cut(s) | 38, 80, 96, 156, 162 |
| Fnu4HI | GCNGC | 1 cut(s) | 468 |
| Fsp4HI | GCNGC | 1 cut(s) | 468 |
| FspBI | CTAG | 2 cut(s) | 12, 474 |
| GluI | GCNGC | 1 cut(s) | 468 |
| HaeIII | GGCC | 1 cut(s) | 304 |
| Hin1I | GRCGYC | 2 cut(s) | 153, 159 |
| Hin1II | CATG | 1 cut(s) | 127 |
| HincII | GTYRAC | 7 cut(s) | 39, 52, 81, 97, 121, 157, 163 |
| HindII | GTYRAC | 7 cut(s) | 39, 52, 81, 97, 121, 157, 163 |
| HindIII | AAGCTT | 1 cut(s) | 425 |
| HinfI | GANTC | 1 cut(s) | 191 |
| HphI | GGTGA | 1 cut(s) | 392 |
| Hpy166II | GTNNAC | 7 cut(s) | 39, 52, 81, 97, 121, 157, 163 |
| Hpy188I | TCNGA | 2 cut(s) | 178, 267 |
| Hpy188III | TCNNGA | 1 cut(s) | 251 |
| Hpy8I | GTNNAC | 7 cut(s) | 39, 52, 81, 97, 121, 157, 163 |
| Hpy99I | CGWCG | 4 cut(s) | 155, 158, 161, 164 |
| HpyAV | CCTTC | 2 cut(s) | 358, 462 |
| HpyCH4III | ACNGT | 1 cut(s) | 78 |
| HpyCH4IV | ACGT | 2 cut(s) | 153, 159 |
| HpyCH4V | TGCA | 1 cut(s) | 325 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 476 |
| HpyF3I | CTNAG | 1 cut(s) | 264 |
| HpySE526I | ACGT | 2 cut(s) | 153, 159 |
| Hsp92I | GRCGYC | 2 cut(s) | 153, 159 |
| Hsp92II | CATG | 1 cut(s) | 127 |
| Kzo9I | GATC | 1 cut(s) | 330 |
| LmnI | GCTCC | 3 cut(s) | 262, 315, 454 |
| LpnPI | CCDG | 7 cut(s) | 27, 47, 148, 185, 231, 320, 347 |
| Lsp1109I | GCAGC | 1 cut(s) | 454 |
| LweI | GCATC | 1 cut(s) | 297 |
| MaeI | CTAG | 2 cut(s) | 12, 474 |
| MaeII | ACGT | 2 cut(s) | 153, 159 |
| MalI | GATC | 1 cut(s) | 332 |
| MboI | GATC | 1 cut(s) | 330 |
| MboII | GAAGA | 5 cut(s) | 155, 197, 200, 422, 425 |
| MflI | RGATCY | 1 cut(s) | 330 |
| MluCI | AATT | 3 cut(s) | 296, 386, 390 |
| MmeI | TCCRAC | 1 cut(s) | 284 |
| MnlI | CCTC | 2 cut(s) | 312, 376 |
| MroXI | GAANNNNTTC | 1 cut(s) | 390 |
| MseI | TTAA | 3 cut(s) | 27, 290, 389 |
| MspR9I | CCNGG | 1 cut(s) | 335 |
| MvaI | CCWGG | 1 cut(s) | 335 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 476 |
| NdeII | GATC | 1 cut(s) | 330 |
| NlaIII | CATG | 1 cut(s) | 127 |
| NlaIV | GGNNCC | 2 cut(s) | 332, 450 |
| NspI | RCATGY | 1 cut(s) | 127 |
| PciI | ACATGT | 1 cut(s) | 123 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 156, 159 |
| PdmI | GAANNNNTTC | 1 cut(s) | 390 |
| PfeI | GAWTC | 1 cut(s) | 191 |
| PkrI | GCNGC | 1 cut(s) | 469 |
| PscI | ACATGT | 1 cut(s) | 123 |
| PshBI | ATTAAT | 1 cut(s) | 389 |
| Psp6I | CCWGG | 1 cut(s) | 333 |
| PspGI | CCWGG | 1 cut(s) | 333 |
| PspN4I | GGNNCC | 2 cut(s) | 332, 450 |
| PsuI | RGATCY | 1 cut(s) | 330 |
| SalI | GTCGAC | 5 cut(s) | 37, 79, 95, 155, 161 |
| SaqAI | TTAA | 3 cut(s) | 27, 290, 389 |
| SatI | GCNGC | 1 cut(s) | 468 |
| Sau3AI | GATC | 1 cut(s) | 330 |
| ScrFI | CCNGG | 1 cut(s) | 335 |
| SfaNI | GCATC | 1 cut(s) | 297 |
| SgrDI | CGTCGACG | 1 cut(s) | 155 |
| Sse9I | AATT | 3 cut(s) | 296, 386, 390 |
| SspMI | CTAG | 2 cut(s) | 12, 474 |
| StyD4I | CCNGG | 1 cut(s) | 333 |
| TaaI | ACNGT | 1 cut(s) | 78 |
| TaiI | ACGT | 2 cut(s) | 156, 162 |
| TaqI | TCGA | 7 cut(s) | 38, 80, 96, 150, 156, 162, 170 |
| TasI | AATT | 3 cut(s) | 296, 386, 390 |
| TfiI | GAWTC | 1 cut(s) | 191 |
| Tru1I | TTAA | 3 cut(s) | 27, 290, 389 |
| Tru9I | TTAA | 3 cut(s) | 27, 290, 389 |
| TseI | GCWGC | 1 cut(s) | 467 |
| TspDTI | ATGAA | 1 cut(s) | 423 |
| VspI | ATTAAT | 1 cut(s) | 389 |
| XceI | RCATGY | 1 cut(s) | 127 |
| XmiI | GTMKAC | 5 cut(s) | 38, 80, 96, 156, 162 |
| XmnI | GAANNNNTTC | 1 cut(s) | 390 |
| XspI | CTAG | 2 cut(s) | 12, 474 |
| ZraI | GACGTC | 2 cut(s) | 154, 160 |