ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 73 |
| Acc36I | ACCTGC | 1 cut(s) | 73 |
| AciI | CCGC | 1 cut(s) | 80 |
| AclWI | GGATC | 1 cut(s) | 209 |
| AcsI | RAATTY | 2 cut(s) | 142, 198 |
| AflII | CTTAAG | 1 cut(s) | 292 |
| AgsI | TTSAA | 1 cut(s) | 316 |
| AjnI | CCWGG | 1 cut(s) | 231 |
| AluBI | AGCT | 1 cut(s) | 265 |
| AluI | AGCT | 1 cut(s) | 265 |
| Alw21I | GWGCWC | 1 cut(s) | 267 |
| Alw26I | GTCTC | 2 cut(s) | 49, 342 |
| AlwI | GGATC | 1 cut(s) | 209 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 209 |
| ApeKI | GCWGC | 1 cut(s) | 298 |
| ApoI | RAATTY | 2 cut(s) | 142, 198 |
| AseI | ATTAAT | 1 cut(s) | 129 |
| AspS9I | GGNCC | 2 cut(s) | 77, 229 |
| AsuHPI | GGTGA | 1 cut(s) | 272 |
| AvaII | GGWCC | 2 cut(s) | 77, 229 |
| BanII | GRGCYC | 1 cut(s) | 267 |
| BbsI | GAAGAC | 1 cut(s) | 237 |
| Bbv12I | GWGCWC | 1 cut(s) | 267 |
| BbvI | GCAGC | 1 cut(s) | 310 |
| BciT130I | CCWGG | 1 cut(s) | 233 |
| BcoDI | GTCTC | 2 cut(s) | 49, 342 |
| BfrI | CTTAAG | 1 cut(s) | 292 |
| BfuAI | ACCTGC | 1 cut(s) | 73 |
| BisI | GCNGC | 1 cut(s) | 299 |
| BlsI | GCNGC | 1 cut(s) | 300 |
| Bme1390I | CCNGG | 1 cut(s) | 233 |
| Bme18I | GGWCC | 2 cut(s) | 77, 229 |
| BmgT120I | GGNCC | 2 cut(s) | 77, 229 |
| BmrFI | CCNGG | 1 cut(s) | 233 |
| BmrI | ACTGGG | 1 cut(s) | 328 |
| BmuI | ACTGGG | 1 cut(s) | 328 |
| BpiI | GAAGAC | 1 cut(s) | 237 |
| BsaI | GGTCTC | 2 cut(s) | 49, 342 |
| Bse1I | ACTGG | 2 cut(s) | 203, 323 |
| Bse3DI | GCAATG | 1 cut(s) | 302 |
| BseBI | CCWGG | 1 cut(s) | 233 |
| BseMI | GCAATG | 1 cut(s) | 302 |
| BseNI | ACTGG | 2 cut(s) | 203, 323 |
| BseRI | GAGGAG | 1 cut(s) | 241 |
| BseXI | GCAGC | 1 cut(s) | 310 |
| BsiHKAI | GWGCWC | 1 cut(s) | 267 |
| BsiSI | CCGG | 1 cut(s) | 173 |
| BsmAI | GTCTC | 2 cut(s) | 49, 342 |
| Bso31I | GGTCTC | 2 cut(s) | 49, 342 |
| Bsp1286I | GDGCHC | 1 cut(s) | 267 |
| Bsp143I | GATC | 3 cut(s) | 7, 214, 327 |
| BspACI | CCGC | 1 cut(s) | 80 |
| BspMI | ACCTGC | 1 cut(s) | 73 |
| BspPI | GGATC | 1 cut(s) | 209 |
| BspTI | CTTAAG | 1 cut(s) | 292 |
| BspTNI | GGTCTC | 2 cut(s) | 49, 342 |
| BsrDI | GCAATG | 1 cut(s) | 302 |
| BsrI | ACTGG | 2 cut(s) | 203, 323 |
| BssMI | GATC | 3 cut(s) | 7, 214, 327 |
| Bst2UI | CCWGG | 1 cut(s) | 233 |
| Bst4CI | ACNGT | 1 cut(s) | 414 |
| BstAFI | CTTAAG | 1 cut(s) | 292 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 304 |
| BstDEI | CTNAG | 2 cut(s) | 225, 273 |
| BstKTI | GATC | 3 cut(s) | 10, 217, 330 |
| BstMAI | GTCTC | 2 cut(s) | 49, 342 |
| BstMBI | GATC | 3 cut(s) | 7, 214, 327 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 278, 304 |
| BstNI | CCWGG | 1 cut(s) | 233 |
| BstSCI | CCNGG | 1 cut(s) | 231 |
| BstV1I | GCAGC | 1 cut(s) | 310 |
| BstV2I | GAAGAC | 1 cut(s) | 237 |
| BtsI | GCAGTG | 1 cut(s) | 267 |
| BtsIMutI | CAGTG | 1 cut(s) | 267 |
| BveI | ACCTGC | 1 cut(s) | 73 |
| CaiI | CAGNNNCTG | 1 cut(s) | 209 |
| Cfr13I | GGNCC | 2 cut(s) | 77, 229 |
| CsiI | ACCWGGT | 1 cut(s) | 231 |
| CviAII | CATG | 3 cut(s) | 331, 372, 386 |
| CviJI | RGCY | 4 cut(s) | 18, 176, 265, 301 |
| CviKI_1 | RGCY | 4 cut(s) | 18, 176, 265, 301 |
| DdeI | CTNAG | 2 cut(s) | 225, 273 |
| DpnI | GATC | 3 cut(s) | 9, 216, 329 |
| DpnII | GATC | 3 cut(s) | 7, 214, 327 |
| Ecl136II | GAGCTC | 1 cut(s) | 265 |
| Eco24I | GRGCYC | 1 cut(s) | 267 |
| Eco31I | GGTCTC | 2 cut(s) | 49, 342 |
| Eco47I | GGWCC | 2 cut(s) | 77, 229 |
| Eco53kI | GAGCTC | 1 cut(s) | 265 |
| EcoICRI | GAGCTC | 1 cut(s) | 265 |
| EcoRII | CCWGG | 1 cut(s) | 231 |
| EcoT38I | GRGCYC | 1 cut(s) | 267 |
| FaeI | CATG | 3 cut(s) | 334, 375, 389 |
| FaiI | YATR | 9 cut(s) | 123, 179, 181, 283, 332, 345, 347, 373, 387 |
| FatI | CATG | 3 cut(s) | 330, 371, 385 |
| Fnu4HI | GCNGC | 1 cut(s) | 299 |
| FriOI | GRGCYC | 1 cut(s) | 267 |
| Fsp4HI | GCNGC | 1 cut(s) | 299 |
| GluI | GCNGC | 1 cut(s) | 299 |
| HapII | CCGG | 1 cut(s) | 173 |
| Hin1II | CATG | 3 cut(s) | 334, 375, 389 |
| HpaII | CCGG | 1 cut(s) | 173 |
| HphI | GGTGA | 1 cut(s) | 272 |
| Hpy166II | GTNNAC | 1 cut(s) | 67 |
| Hpy188I | TCNGA | 1 cut(s) | 118 |
| Hpy188III | TCNNGA | 1 cut(s) | 149 |
| Hpy8I | GTNNAC | 1 cut(s) | 67 |
| HpyAV | CCTTC | 1 cut(s) | 370 |
| HpyCH4III | ACNGT | 1 cut(s) | 414 |
| HpyCH4V | TGCA | 3 cut(s) | 160, 281, 385 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 278, 304 |
| HpyF3I | CTNAG | 2 cut(s) | 225, 273 |
| Hsp92II | CATG | 3 cut(s) | 334, 375, 389 |
| Kzo9I | GATC | 3 cut(s) | 7, 214, 327 |
| LpnPI | CCDG | 8 cut(s) | 68, 162, 186, 216, 218, 243, 245, 304 |
| Lsp1109I | GCAGC | 1 cut(s) | 310 |
| MabI | ACCWGGT | 1 cut(s) | 231 |
| MalI | GATC | 3 cut(s) | 9, 216, 329 |
| MboI | GATC | 3 cut(s) | 7, 214, 327 |
| MboII | GAAGA | 1 cut(s) | 237 |
| MhlI | GDGCHC | 1 cut(s) | 267 |
| MluCI | AATT | 5 cut(s) | 43, 142, 161, 166, 198 |
| MmeI | TCCRAC | 1 cut(s) | 242 |
| MnlI | CCTC | 4 cut(s) | 69, 259, 262, 318 |
| MseI | TTAA | 5 cut(s) | 102, 129, 165, 293, 368 |
| MslI | CAYNNNNRTG | 1 cut(s) | 390 |
| MspCI | CTTAAG | 1 cut(s) | 292 |
| MspI | CCGG | 1 cut(s) | 173 |
| MspR9I | CCNGG | 1 cut(s) | 233 |
| MvaI | CCWGG | 1 cut(s) | 233 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 278, 304 |
| NdeII | GATC | 3 cut(s) | 7, 214, 327 |
| NlaIII | CATG | 3 cut(s) | 334, 375, 389 |
| PaqCI | CACCTGC | 1 cut(s) | 73 |
| PflFI | GACNNNGTC | 1 cut(s) | 233 |
| PkrI | GCNGC | 1 cut(s) | 300 |
| PshBI | ATTAAT | 1 cut(s) | 129 |
| Psp124BI | GAGCTC | 1 cut(s) | 267 |
| Psp6I | CCWGG | 1 cut(s) | 231 |
| PspGI | CCWGG | 1 cut(s) | 231 |
| PspPI | GGNCC | 2 cut(s) | 77, 229 |
| PstNI | CAGNNNCTG | 1 cut(s) | 209 |
| PsyI | GACNNNGTC | 1 cut(s) | 233 |
| RseI | CAYNNNNRTG | 1 cut(s) | 390 |
| SacI | GAGCTC | 1 cut(s) | 267 |
| SaqAI | TTAA | 5 cut(s) | 102, 129, 165, 293, 368 |
| SatI | GCNGC | 1 cut(s) | 299 |
| Sau3AI | GATC | 3 cut(s) | 7, 214, 327 |
| Sau96I | GGNCC | 2 cut(s) | 77, 229 |
| ScrFI | CCNGG | 1 cut(s) | 233 |
| SduI | GDGCHC | 1 cut(s) | 267 |
| SetI | ASST | 6 cut(s) | 61, 87, 237, 262, 267, 381 |
| SexAI | ACCWGGT | 1 cut(s) | 231 |
| SinI | GGWCC | 2 cut(s) | 77, 229 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 390 |
| SmlI | CTYRAG | 1 cut(s) | 292 |
| SmoI | CTYRAG | 1 cut(s) | 292 |
| Sse9I | AATT | 5 cut(s) | 43, 142, 161, 166, 198 |
| SsiI | CCGC | 1 cut(s) | 80 |
| SstI | GAGCTC | 1 cut(s) | 267 |
| StyD4I | CCNGG | 1 cut(s) | 231 |
| TaaI | ACNGT | 1 cut(s) | 414 |
| TasI | AATT | 5 cut(s) | 43, 142, 161, 166, 198 |
| Tru1I | TTAA | 5 cut(s) | 102, 129, 165, 293, 368 |
| Tru9I | TTAA | 5 cut(s) | 102, 129, 165, 293, 368 |
| TscAI | CASTG | 1 cut(s) | 274 |
| TseI | GCWGC | 1 cut(s) | 298 |
| TspDTI | ATGAA | 1 cut(s) | 37 |
| TspRI | CASTG | 1 cut(s) | 274 |
| Tth111I | GACNNNGTC | 1 cut(s) | 233 |
| Vha464I | CTTAAG | 1 cut(s) | 292 |
| VpaK11BI | GGWCC | 2 cut(s) | 77, 229 |
| VspI | ATTAAT | 1 cut(s) | 129 |
| XapI | RAATTY | 2 cut(s) | 142, 198 |