Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-RING_2 | PF13639 | 67 - 114 | 6.8e-14 | Ring finger domain |
| zf-C3HC4 | PF00097 | 67 - 113 | 5.3e-08 | Zinc finger, C3HC4 type (RING finger) |
| zf-RING_UBOX | PF13445 | 67 - 111 | 3.3e-07 | RING-type zinc-finger |
| zf-rbx1 | PF12678 | 89 - 114 | 9.4e-09 | RING-H2 zinc finger domain |
| zf-C3HC4_2 | PF13923 | 89 - 113 | 1.1e-07 | Zinc finger, C3HC4 type (RING finger) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 174 |
| AccB1I | GGYRCC | 1 cut(s) | 191 |
| AccBSI | CCGCTC | 1 cut(s) | 342 |
| AccII | CGCG | 1 cut(s) | 74 |
| AciI | CCGC | 2 cut(s) | 262, 340 |
| AclWI | GGATC | 1 cut(s) | 350 |
| AcoI | YGGCCR | 1 cut(s) | 274 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 172 |
| AgsI | TTSAA | 2 cut(s) | 117, 188 |
| AhlI | ACTAGT | 1 cut(s) | 143 |
| AluBI | AGCT | 1 cut(s) | 242 |
| AluI | AGCT | 1 cut(s) | 242 |
| AlwI | GGATC | 1 cut(s) | 350 |
| AoxI | GGCC | 1 cut(s) | 274 |
| ApeKI | GCWGC | 1 cut(s) | 82 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 219 |
| AspLEI | GCGC | 1 cut(s) | 76 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 12, 45 |
| BalI | TGGCCA | 1 cut(s) | 276 |
| BanI | GGYRCC | 1 cut(s) | 191 |
| BbvI | GCAGC | 1 cut(s) | 69 |
| BccI | CCATC | 1 cut(s) | 356 |
| BcuI | ACTAGT | 1 cut(s) | 143 |
| BfaI | CTAG | 2 cut(s) | 6, 144 |
| BfmI | CTRYAG | 3 cut(s) | 167, 180, 243 |
| BfuAI | ACCTGC | 1 cut(s) | 174 |
| BisI | GCNGC | 2 cut(s) | 83, 340 |
| BlsI | GCNGC | 2 cut(s) | 84, 341 |
| BmiI | GGNNCC | 2 cut(s) | 193, 267 |
| BmsI | GCATC | 1 cut(s) | 139 |
| Bsa29I | ATCGAT | 1 cut(s) | 48 |
| BsaBI | GATNNNNATC | 1 cut(s) | 360 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 172 |
| Bse118I | RCCGGY | 1 cut(s) | 98 |
| Bse8I | GATNNNNATC | 1 cut(s) | 360 |
| BseCI | ATCGAT | 1 cut(s) | 48 |
| BseJI | GATNNNNATC | 1 cut(s) | 360 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 172 |
| BseXI | GCAGC | 1 cut(s) | 69 |
| Bsh1236I | CGCG | 1 cut(s) | 74 |
| BshFI | GGCC | 1 cut(s) | 276 |
| BshNI | GGYRCC | 1 cut(s) | 191 |
| BshVI | ATCGAT | 1 cut(s) | 48 |
| BsiSI | CCGG | 2 cut(s) | 86, 99 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 172 |
| BsnI | GGCC | 1 cut(s) | 276 |
| Bsp143I | GATC | 2 cut(s) | 49, 355 |
| BspACI | CCGC | 2 cut(s) | 262, 340 |
| BspANI | GGCC | 1 cut(s) | 276 |
| BspDI | ATCGAT | 1 cut(s) | 48 |
| BspFNI | CGCG | 1 cut(s) | 74 |
| BspLI | GGNNCC | 2 cut(s) | 193, 267 |
| BspMAI | CTGCAG | 1 cut(s) | 171 |
| BspMI | ACCTGC | 1 cut(s) | 174 |
| BspPI | GGATC | 1 cut(s) | 350 |
| BspT107I | GGYRCC | 1 cut(s) | 191 |
| BsrBI | CCGCTC | 1 cut(s) | 342 |
| BsrFI | RCCGGY | 1 cut(s) | 98 |
| BssAI | RCCGGY | 1 cut(s) | 98 |
| BssMI | GATC | 2 cut(s) | 49, 355 |
| Bst4CI | ACNGT | 2 cut(s) | 175, 184 |
| BstEII | GGTNACC | 1 cut(s) | 101 |
| BstFNI | CGCG | 1 cut(s) | 74 |
| BstHHI | GCGC | 1 cut(s) | 76 |
| BstKTI | GATC | 2 cut(s) | 52, 358 |
| BstMBI | GATC | 2 cut(s) | 49, 355 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 82, 158, 336 |
| BstPI | GGTNACC | 1 cut(s) | 101 |
| BstSFI | CTRYAG | 3 cut(s) | 167, 180, 243 |
| BstUI | CGCG | 1 cut(s) | 74 |
| BstV1I | GCAGC | 1 cut(s) | 69 |
| Bsu15I | ATCGAT | 1 cut(s) | 48 |
| BsuRI | GGCC | 1 cut(s) | 276 |
| BsuTUI | ATCGAT | 1 cut(s) | 48 |
| BveI | ACCTGC | 1 cut(s) | 174 |
| CfoI | GCGC | 1 cut(s) | 76 |
| Cfr10I | RCCGGY | 1 cut(s) | 98 |
| ClaI | ATCGAT | 1 cut(s) | 48 |
| CseI | GACGC | 2 cut(s) | 80, 88 |
| CviAII | CATG | 1 cut(s) | 278 |
| CviJI | RGCY | 5 cut(s) | 5, 98, 242, 276, 310 |
| CviKI_1 | RGCY | 5 cut(s) | 5, 98, 242, 276, 310 |
| DpnI | GATC | 2 cut(s) | 51, 357 |
| DpnII | GATC | 2 cut(s) | 49, 355 |
| EaeI | YGGCCR | 1 cut(s) | 274 |
| Eco91I | GGTNACC | 1 cut(s) | 101 |
| EcoO65I | GGTNACC | 1 cut(s) | 101 |
| FaeI | CATG | 1 cut(s) | 281 |
| FaiI | YATR | 4 cut(s) | 40, 245, 279, 299 |
| FatI | CATG | 1 cut(s) | 277 |
| FauI | CCCGC | 1 cut(s) | 255 |
| Fnu4HI | GCNGC | 2 cut(s) | 83, 340 |
| Fsp4HI | GCNGC | 2 cut(s) | 83, 340 |
| FspBI | CTAG | 2 cut(s) | 6, 144 |
| GlaI | GCGC | 1 cut(s) | 75 |
| GluI | GCNGC | 2 cut(s) | 83, 340 |
| HaeIII | GGCC | 1 cut(s) | 276 |
| HapII | CCGG | 2 cut(s) | 86, 99 |
| HgaI | GACGC | 2 cut(s) | 80, 88 |
| HhaI | GCGC | 1 cut(s) | 76 |
| Hin1II | CATG | 1 cut(s) | 281 |
| Hin6I | GCGC | 1 cut(s) | 74 |
| HinP1I | GCGC | 1 cut(s) | 74 |
| HpaII | CCGG | 2 cut(s) | 86, 99 |
| Hpy188I | TCNGA | 2 cut(s) | 34, 130 |
| Hpy188III | TCNNGA | 3 cut(s) | 15, 117, 287 |
| Hpy99I | CGWCG | 3 cut(s) | 74, 127, 130 |
| HpyAV | CCTTC | 3 cut(s) | 182, 209, 230 |
| HpyCH4III | ACNGT | 2 cut(s) | 175, 184 |
| HpyCH4IV | ACGT | 1 cut(s) | 122 |
| HpyCH4V | TGCA | 2 cut(s) | 169, 297 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 82, 158, 336 |
| HpySE526I | ACGT | 1 cut(s) | 122 |
| Hsp92II | CATG | 1 cut(s) | 281 |
| HspAI | GCGC | 1 cut(s) | 74 |
| Kzo9I | GATC | 2 cut(s) | 49, 355 |
| LmnI | GCTCC | 1 cut(s) | 239 |
| LpnPI | CCDG | 6 cut(s) | 28, 99, 112, 119, 179, 209 |
| Lsp1109I | GCAGC | 1 cut(s) | 69 |
| LweI | GCATC | 1 cut(s) | 139 |
| MaeI | CTAG | 2 cut(s) | 6, 144 |
| MaeII | ACGT | 1 cut(s) | 122 |
| MaeIII | GTNAC | 1 cut(s) | 101 |
| MalI | GATC | 2 cut(s) | 51, 357 |
| MbiI | CCGCTC | 1 cut(s) | 342 |
| MboI | GATC | 2 cut(s) | 49, 355 |
| MboII | GAAGA | 3 cut(s) | 242, 245, 343 |
| MlsI | TGGCCA | 1 cut(s) | 276 |
| MluNI | TGGCCA | 1 cut(s) | 276 |
| MmeI | TCCRAC | 2 cut(s) | 108, 345 |
| MnlI | CCTC | 4 cut(s) | 28, 248, 342, 369 |
| Mox20I | TGGCCA | 1 cut(s) | 276 |
| MroXI | GAANNNNTTC | 1 cut(s) | 219 |
| MscI | TGGCCA | 1 cut(s) | 276 |
| Msp20I | TGGCCA | 1 cut(s) | 276 |
| MspI | CCGG | 2 cut(s) | 86, 99 |
| MvnI | CGCG | 1 cut(s) | 74 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 82, 158, 336 |
| NdeII | GATC | 2 cut(s) | 49, 355 |
| NlaIII | CATG | 1 cut(s) | 281 |
| NlaIV | GGNNCC | 2 cut(s) | 193, 267 |
| PdmI | GAANNNNTTC | 1 cut(s) | 219 |
| PkrI | GCNGC | 2 cut(s) | 84, 341 |
| PspEI | GGTNACC | 1 cut(s) | 101 |
| PspN4I | GGNNCC | 2 cut(s) | 193, 267 |
| PstI | CTGCAG | 1 cut(s) | 171 |
| SatI | GCNGC | 2 cut(s) | 83, 340 |
| Sau3AI | GATC | 2 cut(s) | 49, 355 |
| SetI | ASST | 7 cut(s) | 125, 168, 193, 220, 244, 250, 259 |
| SfaNI | GCATC | 1 cut(s) | 139 |
| SfcI | CTRYAG | 3 cut(s) | 167, 180, 243 |
| SpeI | ACTAGT | 1 cut(s) | 143 |
| SsiI | CCGC | 2 cut(s) | 262, 340 |
| SspMI | CTAG | 2 cut(s) | 6, 144 |
| TaaI | ACNGT | 2 cut(s) | 175, 184 |
| TaiI | ACGT | 1 cut(s) | 125 |
| TaqI | TCGA | 2 cut(s) | 48, 354 |
| TauI | GCSGC | 1 cut(s) | 342 |
| TseI | GCWGC | 1 cut(s) | 82 |
| XmnI | GAANNNNTTC | 1 cut(s) | 219 |
| XspI | CTAG | 2 cut(s) | 6, 144 |