ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 270 |
| AciI | CCGC | 4 cut(s) | 34, 131, 492, 854 |
| AclI | AACGTT | 1 cut(s) | 184 |
| AclWI | GGATC | 1 cut(s) | 822 |
| AcoI | YGGCCR | 1 cut(s) | 191 |
| AcvI | CACGTG | 1 cut(s) | 497 |
| AcyI | GRCGYC | 2 cut(s) | 89, 271 |
| AfaI | GTAC | 1 cut(s) | 484 |
| AflII | CTTAAG | 1 cut(s) | 23 |
| AflIII | ACRYGT | 1 cut(s) | 418 |
| AgsI | TTSAA | 4 cut(s) | 380, 413, 638, 686 |
| AhlI | ACTAGT | 1 cut(s) | 589 |
| AjnI | CCWGG | 3 cut(s) | 172, 391, 937 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 538, 570 |
| AleI | CACNNNNGTG | 1 cut(s) | 664 |
| AluBI | AGCT | 4 cut(s) | 116, 503, 766, 843 |
| AluI | AGCT | 4 cut(s) | 116, 503, 766, 843 |
| Alw21I | GWGCWC | 2 cut(s) | 118, 768 |
| Alw26I | GTCTC | 2 cut(s) | 655, 699 |
| AlwI | GGATC | 1 cut(s) | 822 |
| AoxI | GGCC | 5 cut(s) | 19, 170, 191, 518, 920 |
| AseI | ATTAAT | 1 cut(s) | 435 |
| AspLEI | GCGC | 1 cut(s) | 273 |
| AspS9I | GGNCC | 3 cut(s) | 360, 451, 519 |
| AsuC2I | CCSGG | 1 cut(s) | 898 |
| AsuHPI | GGTGA | 2 cut(s) | 190, 843 |
| AsuII | TTCGAA | 1 cut(s) | 891 |
| AvaII | GGWCC | 2 cut(s) | 360, 451 |
| BalI | TGGCCA | 1 cut(s) | 193 |
| BanI | GGYRCC | 1 cut(s) | 270 |
| BanII | GRGCYC | 2 cut(s) | 118, 768 |
| BbrPI | CACGTG | 1 cut(s) | 497 |
| Bbv12I | GWGCWC | 2 cut(s) | 118, 768 |
| BccI | CCATC | 4 cut(s) | 89, 210, 376, 904 |
| BciT130I | CCWGG | 3 cut(s) | 174, 393, 939 |
| BclI | TGATCA | 1 cut(s) | 439 |
| BcnI | CCSGG | 1 cut(s) | 898 |
| BcoDI | GTCTC | 2 cut(s) | 655, 699 |
| BcuI | ACTAGT | 1 cut(s) | 589 |
| BfaI | CTAG | 1 cut(s) | 590 |
| BfoI | RGCGCY | 1 cut(s) | 274 |
| BfrI | CTTAAG | 1 cut(s) | 23 |
| BlpI | GCTNAGC | 1 cut(s) | 767 |
| Bme1390I | CCNGG | 4 cut(s) | 174, 393, 898, 939 |
| Bme18I | GGWCC | 2 cut(s) | 360, 451 |
| BmgT120I | GGNCC | 3 cut(s) | 360, 451, 519 |
| BmiI | GGNNCC | 2 cut(s) | 272, 521 |
| BmrFI | CCNGG | 4 cut(s) | 174, 393, 898, 939 |
| BmsI | GCATC | 3 cut(s) | 456, 468, 737 |
| BpmI | CTGGAG | 1 cut(s) | 271 |
| Bpu10I | CCTNAGC | 1 cut(s) | 16 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 767 |
| Bpu14I | TTCGAA | 1 cut(s) | 891 |
| BpuEI | CTTGAG | 1 cut(s) | 719 |
| BpuMI | CCSGG | 1 cut(s) | 898 |
| BsaAI | YACGTR | 2 cut(s) | 497, 838 |
| BsaHI | GRCGYC | 2 cut(s) | 89, 271 |
| BsaI | GGTCTC | 1 cut(s) | 655 |
| BsaJI | CCNNGG | 2 cut(s) | 173, 662 |
| Bse3DI | GCAATG | 2 cut(s) | 29, 315 |
| BseBI | CCWGG | 3 cut(s) | 174, 393, 939 |
| BseDI | CCNNGG | 2 cut(s) | 173, 662 |
| BseGI | GGATG | 3 cut(s) | 79, 471, 631 |
| BseMI | GCAATG | 2 cut(s) | 29, 315 |
| BseMII | CTCAG | 1 cut(s) | 781 |
| BseRI | GAGGAG | 2 cut(s) | 157, 564 |
| BsgI | GTGCAG | 1 cut(s) | 937 |
| BshFI | GGCC | 5 cut(s) | 21, 172, 193, 520, 922 |
| BshNI | GGYRCC | 1 cut(s) | 270 |
| BsiHKAI | GWGCWC | 2 cut(s) | 118, 768 |
| BsiSI | CCGG | 1 cut(s) | 897 |
| BsmAI | GTCTC | 2 cut(s) | 655, 699 |
| BsnI | GGCC | 5 cut(s) | 21, 172, 193, 520, 922 |
| Bso31I | GGTCTC | 1 cut(s) | 655 |
| Bsp119I | TTCGAA | 1 cut(s) | 891 |
| Bsp1286I | GDGCHC | 2 cut(s) | 118, 768 |
| Bsp143I | GATC | 4 cut(s) | 146, 439, 524, 814 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 767 |
| BspACI | CCGC | 4 cut(s) | 34, 131, 492, 854 |
| BspANI | GGCC | 5 cut(s) | 21, 172, 193, 520, 922 |
| BspCNI | CTCAG | 1 cut(s) | 780 |
| BspHI | TCATGA | 1 cut(s) | 778 |
| BspLI | GGNNCC | 2 cut(s) | 272, 521 |
| BspPI | GGATC | 1 cut(s) | 822 |
| BspT104I | TTCGAA | 1 cut(s) | 891 |
| BspT107I | GGYRCC | 1 cut(s) | 270 |
| BspTI | CTTAAG | 1 cut(s) | 23 |
| BspTNI | GGTCTC | 1 cut(s) | 655 |
| BsrDI | GCAATG | 2 cut(s) | 29, 315 |
| BssECI | CCNNGG | 2 cut(s) | 173, 662 |
| BssMI | GATC | 4 cut(s) | 146, 439, 524, 814 |
| BssNI | GRCGYC | 2 cut(s) | 89, 271 |
| Bst2UI | CCWGG | 3 cut(s) | 174, 393, 939 |
| Bst6I | CTCTTC | 1 cut(s) | 57 |
| BstACI | GRCGYC | 2 cut(s) | 89, 271 |
| BstAFI | CTTAAG | 1 cut(s) | 23 |
| BstBAI | YACGTR | 2 cut(s) | 497, 838 |
| BstBI | TTCGAA | 1 cut(s) | 891 |
| BstC8I | GCNNGC | 3 cut(s) | 118, 153, 920 |
| BstDEI | CTNAG | 5 cut(s) | 16, 515, 748, 767, 902 |
| BstF5I | GGATG | 3 cut(s) | 79, 471, 631 |
| BstH2I | RGCGCY | 1 cut(s) | 274 |
| BstHHI | GCGC | 1 cut(s) | 273 |
| BstKTI | GATC | 4 cut(s) | 149, 442, 527, 817 |
| BstMAI | GTCTC | 2 cut(s) | 655, 699 |
| BstMBI | GATC | 4 cut(s) | 146, 439, 524, 814 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 500, 862 |
| BstNI | CCWGG | 3 cut(s) | 174, 393, 939 |
| BstNSI | RCATGY | 3 cut(s) | 155, 422, 758 |
| BstSCI | CCNGG | 4 cut(s) | 172, 391, 896, 937 |
| BsuRI | GGCC | 5 cut(s) | 21, 172, 193, 520, 922 |
| BtsCI | GGATG | 3 cut(s) | 79, 471, 631 |
| BtsI | GCAGTG | 1 cut(s) | 453 |
| BtsIMutI | CAGTG | 1 cut(s) | 453 |
| Cac8I | GCNNGC | 3 cut(s) | 118, 153, 920 |
| CciI | TCATGA | 1 cut(s) | 778 |
| CfoI | GCGC | 1 cut(s) | 273 |
| Cfr13I | GGNCC | 3 cut(s) | 360, 451, 519 |
| CseI | GACGC | 1 cut(s) | 78 |
| Csp6I | GTAC | 1 cut(s) | 483 |
| CviAII | CATG | 6 cut(s) | 152, 299, 419, 755, 772, 779 |
| CviQI | GTAC | 1 cut(s) | 483 |
| DdeI | CTNAG | 5 cut(s) | 16, 515, 748, 767, 902 |
| DinI | GGCGCC | 1 cut(s) | 272 |
| DpnI | GATC | 4 cut(s) | 148, 441, 526, 816 |
| DpnII | GATC | 4 cut(s) | 146, 439, 524, 814 |
| EaeI | YGGCCR | 1 cut(s) | 191 |
| Eam1104I | CTCTTC | 1 cut(s) | 57 |
| EarI | CTCTTC | 1 cut(s) | 57 |
| Ecl136II | GAGCTC | 2 cut(s) | 116, 766 |
| Eco147I | AGGCCT | 1 cut(s) | 21 |
| Eco24I | GRGCYC | 2 cut(s) | 118, 768 |
| Eco31I | GGTCTC | 1 cut(s) | 655 |
| Eco47I | GGWCC | 2 cut(s) | 360, 451 |
| Eco53kI | GAGCTC | 2 cut(s) | 116, 766 |
| Eco72I | CACGTG | 1 cut(s) | 497 |
| EcoICRI | GAGCTC | 2 cut(s) | 116, 766 |
| EcoO109I | RGGNCCY | 1 cut(s) | 519 |
| EcoRII | CCWGG | 3 cut(s) | 172, 391, 937 |
| EcoT22I | ATGCAT | 1 cut(s) | 461 |
| EcoT38I | GRGCYC | 2 cut(s) | 118, 768 |
| EgeI | GGCGCC | 1 cut(s) | 272 |
| EheI | GGCGCC | 1 cut(s) | 272 |
| FaeI | CATG | 6 cut(s) | 155, 302, 422, 758, 775, 782 |
| FatI | CATG | 6 cut(s) | 151, 298, 418, 754, 771, 778 |
| FauI | CCCGC | 2 cut(s) | 27, 124 |
| FbaI | TGATCA | 1 cut(s) | 439 |
| FokI | GGATG | 3 cut(s) | 86, 478, 638 |
| FriOI | GRGCYC | 2 cut(s) | 118, 768 |
| FspBI | CTAG | 1 cut(s) | 590 |
| GlaI | GCGC | 1 cut(s) | 272 |
| GsuI | CTGGAG | 1 cut(s) | 271 |
| HaeII | RGCGCY | 1 cut(s) | 274 |
| HaeIII | GGCC | 5 cut(s) | 21, 172, 193, 520, 922 |
| HapII | CCGG | 1 cut(s) | 897 |
| HgaI | GACGC | 1 cut(s) | 78 |
| HhaI | GCGC | 1 cut(s) | 273 |
| Hin1I | GRCGYC | 2 cut(s) | 89, 271 |
| Hin1II | CATG | 6 cut(s) | 155, 302, 422, 758, 775, 782 |
| Hin6I | GCGC | 1 cut(s) | 271 |
| HinP1I | GCGC | 1 cut(s) | 271 |
| HindIII | AAGCTT | 1 cut(s) | 501 |
| HinfI | GANTC | 3 cut(s) | 313, 692, 782 |
| HpaII | CCGG | 1 cut(s) | 897 |
| HphI | GGTGA | 2 cut(s) | 190, 843 |
| Hpy166II | GTNNAC | 3 cut(s) | 360, 451, 485 |
| Hpy188I | TCNGA | 2 cut(s) | 94, 625 |
| Hpy188III | TCNNGA | 4 cut(s) | 250, 463, 698, 779 |
| Hpy8I | GTNNAC | 3 cut(s) | 360, 451, 485 |
| HpyAV | CCTTC | 5 cut(s) | 373, 398, 480, 592, 644 |
| HpyCH4IV | ACGT | 3 cut(s) | 184, 496, 837 |
| HpyCH4V | TGCA | 8 cut(s) | 298, 308, 335, 459, 728, 754, 878, 918 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 500, 862 |
| HpyF3I | CTNAG | 5 cut(s) | 16, 515, 748, 767, 902 |
| HpySE526I | ACGT | 3 cut(s) | 184, 496, 837 |
| Hsp92I | GRCGYC | 2 cut(s) | 89, 271 |
| Hsp92II | CATG | 6 cut(s) | 155, 302, 422, 758, 775, 782 |
| HspAI | GCGC | 1 cut(s) | 271 |
| KasI | GGCGCC | 1 cut(s) | 270 |
| Ksp22I | TGATCA | 1 cut(s) | 439 |
| Kzo9I | GATC | 4 cut(s) | 146, 439, 524, 814 |
| LweI | GCATC | 3 cut(s) | 456, 468, 737 |
| MaeI | CTAG | 1 cut(s) | 590 |
| MaeII | ACGT | 3 cut(s) | 184, 496, 837 |
| MaeIII | GTNAC | 1 cut(s) | 677 |
| MalI | GATC | 4 cut(s) | 148, 441, 526, 816 |
| MboI | GATC | 4 cut(s) | 146, 439, 524, 814 |
| MboII | GAAGA | 5 cut(s) | 17, 44, 47, 153, 248 |
| MhlI | GDGCHC | 2 cut(s) | 118, 768 |
| MlsI | TGGCCA | 1 cut(s) | 193 |
| MluCI | AATT | 8 cut(s) | 222, 259, 284, 380, 403, 432, 538, 552 |
| MluNI | TGGCCA | 1 cut(s) | 193 |
| Mly113I | GGCGCC | 1 cut(s) | 271 |
| MlyI | GAGTC | 1 cut(s) | 701 |
| MnlI | CCTC | 9 cut(s) | 135, 246, 582, 585, 638, 672, 722, 789, 840 |
| Mox20I | TGGCCA | 1 cut(s) | 193 |
| Mph1103I | ATGCAT | 1 cut(s) | 461 |
| MscI | TGGCCA | 1 cut(s) | 193 |
| MseI | TTAA | 6 cut(s) | 24, 201, 221, 435, 605, 946 |
| MslI | CAYNNNNRTG | 5 cut(s) | 303, 464, 664, 686, 736 |
| Msp20I | TGGCCA | 1 cut(s) | 193 |
| MspCI | CTTAAG | 1 cut(s) | 23 |
| MspI | CCGG | 1 cut(s) | 897 |
| MspR9I | CCNGG | 4 cut(s) | 174, 393, 898, 939 |
| MvaI | CCWGG | 3 cut(s) | 174, 393, 939 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 500, 862 |
| NarI | GGCGCC | 1 cut(s) | 271 |
| NciI | CCSGG | 1 cut(s) | 898 |
| NdeII | GATC | 4 cut(s) | 146, 439, 524, 814 |
| NlaIII | CATG | 6 cut(s) | 155, 302, 422, 758, 775, 782 |
| NlaIV | GGNNCC | 2 cut(s) | 272, 521 |
| NmuCI | GTSAC | 1 cut(s) | 677 |
| NsiI | ATGCAT | 1 cut(s) | 461 |
| NspI | RCATGY | 3 cut(s) | 155, 422, 758 |
| NspV | TTCGAA | 1 cut(s) | 891 |
| OliI | CACNNNNGTG | 1 cut(s) | 664 |
| PaeI | GCATGC | 1 cut(s) | 155 |
| PagI | TCATGA | 1 cut(s) | 778 |
| PceI | AGGCCT | 1 cut(s) | 21 |
| PciI | ACATGT | 1 cut(s) | 418 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 124 |
| PfeI | GAWTC | 2 cut(s) | 313, 782 |
| PleI | GAGTC | 1 cut(s) | 700 |
| PluTI | GGCGCC | 1 cut(s) | 274 |
| PmaCI | CACGTG | 1 cut(s) | 497 |
| PmlI | CACGTG | 1 cut(s) | 497 |
| PpsI | GAGTC | 1 cut(s) | 700 |
| Ppu21I | YACGTR | 2 cut(s) | 497, 838 |
| PscI | ACATGT | 1 cut(s) | 418 |
| PshBI | ATTAAT | 1 cut(s) | 435 |
| Psp124BI | GAGCTC | 2 cut(s) | 118, 768 |
| Psp1406I | AACGTT | 1 cut(s) | 184 |
| Psp6I | CCWGG | 3 cut(s) | 172, 391, 937 |
| PspCI | CACGTG | 1 cut(s) | 497 |
| PspGI | CCWGG | 3 cut(s) | 172, 391, 937 |
| PspN4I | GGNNCC | 2 cut(s) | 272, 521 |
| PspPI | GGNCC | 3 cut(s) | 360, 451, 519 |
| RsaI | GTAC | 1 cut(s) | 484 |
| RsaNI | GTAC | 1 cut(s) | 483 |
| RseI | CAYNNNNRTG | 5 cut(s) | 303, 464, 664, 686, 736 |
| SacI | GAGCTC | 2 cut(s) | 118, 768 |
| SaqAI | TTAA | 6 cut(s) | 24, 201, 221, 435, 605, 946 |
| Sau3AI | GATC | 4 cut(s) | 146, 439, 524, 814 |
| Sau96I | GGNCC | 3 cut(s) | 360, 451, 519 |
| SchI | GAGTC | 1 cut(s) | 701 |
| ScrFI | CCNGG | 4 cut(s) | 174, 393, 898, 939 |
| SduI | GDGCHC | 2 cut(s) | 118, 768 |
| SfaNI | GCATC | 3 cut(s) | 456, 468, 737 |
| SfoI | GGCGCC | 1 cut(s) | 272 |
| SfuI | TTCGAA | 1 cut(s) | 891 |
| SinI | GGWCC | 2 cut(s) | 360, 451 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 303, 464, 664, 686, 736 |
| SmlI | CTYRAG | 2 cut(s) | 23, 698 |
| SmoI | CTYRAG | 2 cut(s) | 23, 698 |
| SpeI | ACTAGT | 1 cut(s) | 589 |
| SphI | GCATGC | 1 cut(s) | 155 |
| Sse9I | AATT | 8 cut(s) | 222, 259, 284, 380, 403, 432, 538, 552 |
| SseBI | AGGCCT | 1 cut(s) | 21 |
| SsiI | CCGC | 4 cut(s) | 34, 131, 492, 854 |
| SspDI | GGCGCC | 1 cut(s) | 270 |
| SspMI | CTAG | 1 cut(s) | 590 |
| SstI | GAGCTC | 2 cut(s) | 118, 768 |
| StuI | AGGCCT | 1 cut(s) | 21 |
| StyD4I | CCNGG | 4 cut(s) | 172, 391, 896, 937 |
| TaiI | ACGT | 3 cut(s) | 187, 499, 840 |
| TaqI | TCGA | 2 cut(s) | 112, 891 |
| TasI | AATT | 8 cut(s) | 222, 259, 284, 380, 403, 432, 538, 552 |
| TfiI | GAWTC | 2 cut(s) | 313, 782 |
| Tru1I | TTAA | 6 cut(s) | 24, 201, 221, 435, 605, 946 |
| Tru9I | TTAA | 6 cut(s) | 24, 201, 221, 435, 605, 946 |
| TscAI | CASTG | 1 cut(s) | 453 |
| TseFI | GTSAC | 1 cut(s) | 677 |
| Tsp45I | GTSAC | 1 cut(s) | 677 |
| TspDTI | ATGAA | 5 cut(s) | 69, 297, 326, 397, 767 |
| TspRI | CASTG | 1 cut(s) | 453 |
| Vha464I | CTTAAG | 1 cut(s) | 23 |
| VpaK11BI | GGWCC | 2 cut(s) | 360, 451 |
| VspI | ATTAAT | 1 cut(s) | 435 |
| XceI | RCATGY | 3 cut(s) | 155, 422, 758 |
| XspI | CTAG | 1 cut(s) | 590 |
| Zsp2I | ATGCAT | 1 cut(s) | 461 |