ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 867 |
| AccBSI | CCGCTC | 1 cut(s) | 763 |
| AccI | GTMKAC | 1 cut(s) | 935 |
| AciI | CCGC | 3 cut(s) | 709, 763, 1030 |
| AclI | AACGTT | 1 cut(s) | 562 |
| AclWI | GGATC | 1 cut(s) | 941 |
| AcoI | YGGCCR | 1 cut(s) | 533 |
| AcsI | RAATTY | 4 cut(s) | 437, 470, 522, 1011 |
| AcuI | CTGAAG | 1 cut(s) | 725 |
| AcvI | CACGTG | 1 cut(s) | 539 |
| AfaI | GTAC | 1 cut(s) | 640 |
| AfeI | AGCGCT | 1 cut(s) | 51 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 170 |
| AgsI | TTSAA | 9 cut(s) | 136, 197, 240, 424, 553, 601, 670, 785, 995 |
| AhlI | ACTAGT | 1 cut(s) | 68 |
| AluBI | AGCT | 4 cut(s) | 200, 265, 1049, 1145 |
| AluI | AGCT | 4 cut(s) | 200, 265, 1049, 1145 |
| Alw21I | GWGCWC | 1 cut(s) | 118 |
| Alw26I | GTCTC | 1 cut(s) | 830 |
| AlwI | GGATC | 1 cut(s) | 941 |
| Aor51HI | AGCGCT | 1 cut(s) | 51 |
| AoxI | GGCC | 6 cut(s) | 122, 161, 173, 296, 533, 778 |
| ApeKI | GCWGC | 4 cut(s) | 47, 52, 368, 1142 |
| ApoI | RAATTY | 4 cut(s) | 437, 470, 522, 1011 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 780 |
| AspLEI | GCGC | 2 cut(s) | 52, 1089 |
| AspS9I | GGNCC | 4 cut(s) | 122, 173, 592, 840 |
| AsuC2I | CCSGG | 1 cut(s) | 120 |
| AsuHPI | GGTGA | 3 cut(s) | 929, 950, 1123 |
| AvaII | GGWCC | 2 cut(s) | 592, 840 |
| BalI | TGGCCA | 1 cut(s) | 535 |
| BbrPI | CACGTG | 1 cut(s) | 539 |
| Bbv12I | GWGCWC | 1 cut(s) | 118 |
| BbvI | GCAGC | 4 cut(s) | 39, 59, 355, 1154 |
| BccI | CCATC | 3 cut(s) | 122, 599, 872 |
| BceAI | ACGGC | 1 cut(s) | 26 |
| BcnI | CCSGG | 1 cut(s) | 120 |
| BcoDI | GTCTC | 1 cut(s) | 830 |
| BcuI | ACTAGT | 1 cut(s) | 68 |
| BfaI | CTAG | 4 cut(s) | 21, 69, 308, 1173 |
| BfmI | CTRYAG | 1 cut(s) | 413 |
| BfoI | RGCGCY | 1 cut(s) | 53 |
| BfuAI | ACCTGC | 1 cut(s) | 867 |
| BglII | AGATCT | 1 cut(s) | 78 |
| BisI | GCNGC | 4 cut(s) | 48, 53, 369, 1143 |
| BlsI | GCNGC | 4 cut(s) | 49, 54, 370, 1144 |
| Bme1390I | CCNGG | 1 cut(s) | 120 |
| Bme18I | GGWCC | 2 cut(s) | 592, 840 |
| BmgT120I | GGNCC | 4 cut(s) | 122, 173, 592, 840 |
| BmiI | GGNNCC | 5 cut(s) | 123, 174, 593, 594, 767 |
| BmrFI | CCNGG | 1 cut(s) | 120 |
| BmsI | GCATC | 1 cut(s) | 798 |
| BpmI | CTGGAG | 1 cut(s) | 287 |
| BpuEI | CTTGAG | 1 cut(s) | 812 |
| BpuMI | CCSGG | 1 cut(s) | 120 |
| BsaAI | YACGTR | 1 cut(s) | 539 |
| BsaI | GGTCTC | 1 cut(s) | 830 |
| BsaJI | CCNNGG | 3 cut(s) | 119, 1016, 1137 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 170 |
| Bse1I | ACTGG | 2 cut(s) | 517, 1100 |
| Bse3DI | GCAATG | 1 cut(s) | 869 |
| BseDI | CCNNGG | 3 cut(s) | 119, 1016, 1137 |
| BseGI | GGATG | 2 cut(s) | 109, 883 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 170 |
| BseMI | GCAATG | 1 cut(s) | 869 |
| BseMII | CTCAG | 1 cut(s) | 24 |
| BseNI | ACTGG | 2 cut(s) | 517, 1100 |
| BseRI | GAGGAG | 1 cut(s) | 284 |
| BseXI | GCAGC | 4 cut(s) | 39, 59, 355, 1154 |
| BseYI | CCCAGC | 1 cut(s) | 913 |
| BsgI | GTGCAG | 1 cut(s) | 911 |
| BshFI | GGCC | 6 cut(s) | 124, 163, 175, 298, 535, 780 |
| BsiHKAI | GWGCWC | 1 cut(s) | 118 |
| BsiSI | CCGG | 1 cut(s) | 119 |
| BslFI | GGGAC | 1 cut(s) | 605 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 170 |
| BsmAI | GTCTC | 1 cut(s) | 830 |
| BsmFI | GGGAC | 1 cut(s) | 605 |
| BsnI | GGCC | 6 cut(s) | 124, 163, 175, 298, 535, 780 |
| Bso31I | GGTCTC | 1 cut(s) | 830 |
| Bsp1286I | GDGCHC | 1 cut(s) | 118 |
| Bsp143I | GATC | 3 cut(s) | 78, 349, 946 |
| Bsp19I | CCATGG | 1 cut(s) | 1016 |
| BspACI | CCGC | 3 cut(s) | 709, 763, 1030 |
| BspANI | GGCC | 6 cut(s) | 124, 163, 175, 298, 535, 780 |
| BspCNI | CTCAG | 1 cut(s) | 25 |
| BspLI | GGNNCC | 5 cut(s) | 123, 174, 593, 594, 767 |
| BspMI | ACCTGC | 1 cut(s) | 867 |
| BspPI | GGATC | 1 cut(s) | 941 |
| BspTNI | GGTCTC | 1 cut(s) | 830 |
| BsrBI | CCGCTC | 1 cut(s) | 763 |
| BsrDI | GCAATG | 1 cut(s) | 869 |
| BsrI | ACTGG | 2 cut(s) | 517, 1100 |
| BssECI | CCNNGG | 3 cut(s) | 119, 1016, 1137 |
| BssMI | GATC | 3 cut(s) | 78, 349, 946 |
| BssT1I | CCWWGG | 2 cut(s) | 1016, 1137 |
| Bst4CI | ACNGT | 1 cut(s) | 91 |
| BstBAI | YACGTR | 1 cut(s) | 539 |
| BstDEI | CTNAG | 2 cut(s) | 33, 1182 |
| BstDSI | CCRYGG | 1 cut(s) | 1016 |
| BstF5I | GGATG | 2 cut(s) | 109, 883 |
| BstH2I | RGCGCY | 1 cut(s) | 53 |
| BstHHI | GCGC | 2 cut(s) | 52, 1089 |
| BstKTI | GATC | 3 cut(s) | 81, 352, 949 |
| BstMAI | GTCTC | 1 cut(s) | 830 |
| BstMBI | GATC | 3 cut(s) | 78, 349, 946 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 44, 620, 706, 786 |
| BstSCI | CCNGG | 1 cut(s) | 118 |
| BstSFI | CTRYAG | 1 cut(s) | 413 |
| BstV1I | GCAGC | 4 cut(s) | 39, 59, 355, 1154 |
| BstX2I | RGATCY | 1 cut(s) | 78 |
| BstYI | RGATCY | 1 cut(s) | 78 |
| BsuRI | GGCC | 6 cut(s) | 124, 163, 175, 298, 535, 780 |
| BtgI | CCRYGG | 1 cut(s) | 1016 |
| BtsCI | GGATG | 2 cut(s) | 109, 883 |
| BtsI | GCAGTG | 1 cut(s) | 1096 |
| BtsIMutI | CAGTG | 3 cut(s) | 118, 195, 1096 |
| BveI | ACCTGC | 1 cut(s) | 867 |
| CfoI | GCGC | 2 cut(s) | 52, 1089 |
| Cfr13I | GGNCC | 4 cut(s) | 122, 173, 592, 840 |
| Csp6I | GTAC | 1 cut(s) | 639 |
| CviAII | CATG | 5 cut(s) | 100, 403, 467, 758, 1017 |
| CviQI | GTAC | 1 cut(s) | 639 |
| DdeI | CTNAG | 2 cut(s) | 33, 1182 |
| DpnI | GATC | 3 cut(s) | 80, 351, 948 |
| DpnII | GATC | 3 cut(s) | 78, 349, 946 |
| DraI | TTTAAA | 2 cut(s) | 325, 433 |
| EaeI | YGGCCR | 1 cut(s) | 533 |
| Eco130I | CCWWGG | 2 cut(s) | 1016, 1137 |
| Eco147I | AGGCCT | 2 cut(s) | 298, 780 |
| Eco31I | GGTCTC | 1 cut(s) | 830 |
| Eco47I | GGWCC | 2 cut(s) | 592, 840 |
| Eco47III | AGCGCT | 1 cut(s) | 51 |
| Eco57I | CTGAAG | 1 cut(s) | 725 |
| Eco72I | CACGTG | 1 cut(s) | 539 |
| EcoO109I | RGGNCCY | 2 cut(s) | 173, 592 |
| EcoRI | GAATTC | 1 cut(s) | 470 |
| EcoT14I | CCWWGG | 2 cut(s) | 1016, 1137 |
| ErhI | CCWWGG | 2 cut(s) | 1016, 1137 |
| FaeI | CATG | 5 cut(s) | 103, 406, 470, 761, 1020 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 65, 97, 778, 810 |
| FaqI | GGGAC | 1 cut(s) | 605 |
| FatI | CATG | 5 cut(s) | 99, 402, 466, 757, 1016 |
| FblI | GTMKAC | 1 cut(s) | 935 |
| Fnu4HI | GCNGC | 4 cut(s) | 48, 53, 369, 1143 |
| FokI | GGATG | 2 cut(s) | 116, 890 |
| Fsp4HI | GCNGC | 4 cut(s) | 48, 53, 369, 1143 |
| FspBI | CTAG | 4 cut(s) | 21, 69, 308, 1173 |
| GlaI | GCGC | 2 cut(s) | 51, 1088 |
| GluI | GCNGC | 4 cut(s) | 48, 53, 369, 1143 |
| GsaI | CCCAGC | 1 cut(s) | 917 |
| GsuI | CTGGAG | 1 cut(s) | 287 |
| HaeII | RGCGCY | 1 cut(s) | 53 |
| HaeIII | GGCC | 6 cut(s) | 124, 163, 175, 298, 535, 780 |
| HapII | CCGG | 1 cut(s) | 119 |
| HhaI | GCGC | 2 cut(s) | 52, 1089 |
| Hin1II | CATG | 5 cut(s) | 103, 406, 470, 761, 1020 |
| Hin6I | GCGC | 2 cut(s) | 50, 1087 |
| HinP1I | GCGC | 2 cut(s) | 50, 1087 |
| HindIII | AAGCTT | 1 cut(s) | 198 |
| HinfI | GANTC | 4 cut(s) | 272, 420, 568, 932 |
| HpaII | CCGG | 1 cut(s) | 119 |
| HphI | GGTGA | 3 cut(s) | 929, 950, 1123 |
| Hpy166II | GTNNAC | 3 cut(s) | 488, 542, 936 |
| Hpy188I | TCNGA | 4 cut(s) | 95, 277, 289, 705 |
| Hpy188III | TCNNGA | 3 cut(s) | 485, 583, 829 |
| Hpy8I | GTNNAC | 3 cut(s) | 488, 542, 936 |
| HpyAV | CCTTC | 6 cut(s) | 547, 647, 750, 770, 791, 895 |
| HpyCH4III | ACNGT | 1 cut(s) | 91 |
| HpyCH4IV | ACGT | 2 cut(s) | 538, 562 |
| HpyCH4V | TGCA | 7 cut(s) | 47, 559, 683, 757, 854, 862, 892 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 44, 620, 706, 786 |
| HpyF3I | CTNAG | 2 cut(s) | 33, 1182 |
| HpySE526I | ACGT | 2 cut(s) | 538, 562 |
| Hsp92II | CATG | 5 cut(s) | 103, 406, 470, 761, 1020 |
| HspAI | GCGC | 2 cut(s) | 50, 1087 |
| KflI | GGGWCCC | 1 cut(s) | 592 |
| Kzo9I | GATC | 3 cut(s) | 78, 349, 946 |
| LmnI | GCTCC | 1 cut(s) | 121 |
| Lsp1109I | GCAGC | 4 cut(s) | 39, 59, 355, 1154 |
| LweI | GCATC | 1 cut(s) | 798 |
| MaeI | CTAG | 4 cut(s) | 21, 69, 308, 1173 |
| MaeII | ACGT | 2 cut(s) | 538, 562 |
| MaeIII | GTNAC | 1 cut(s) | 28 |
| MalI | GATC | 3 cut(s) | 80, 351, 948 |
| MbiI | CCGCTC | 1 cut(s) | 763 |
| MboI | GATC | 3 cut(s) | 78, 349, 946 |
| MboII | GAAGA | 1 cut(s) | 662 |
| MfeI | CAATTG | 1 cut(s) | 940 |
| MflI | RGATCY | 1 cut(s) | 78 |
| MhlI | GDGCHC | 1 cut(s) | 118 |
| MlsI | TGGCCA | 1 cut(s) | 535 |
| MluNI | TGGCCA | 1 cut(s) | 535 |
| MlyI | GAGTC | 3 cut(s) | 281, 562, 941 |
| MmeI | TCCRAC | 1 cut(s) | 545 |
| MnlI | CCTC | 8 cut(s) | 28, 89, 262, 263, 712, 721, 725, 853 |
| Mox20I | TGGCCA | 1 cut(s) | 535 |
| MroXI | GAANNNNTTC | 1 cut(s) | 780 |
| MscI | TGGCCA | 1 cut(s) | 535 |
| MseI | TTAA | 7 cut(s) | 234, 324, 432, 441, 687, 869, 969 |
| Msp20I | TGGCCA | 1 cut(s) | 535 |
| MspA1I | CMGCKG | 1 cut(s) | 1030 |
| MspI | CCGG | 1 cut(s) | 119 |
| MspR9I | CCNGG | 1 cut(s) | 120 |
| MunI | CAATTG | 1 cut(s) | 940 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 44, 620, 706, 786 |
| NciI | CCSGG | 1 cut(s) | 120 |
| NcoI | CCATGG | 1 cut(s) | 1016 |
| NdeII | GATC | 3 cut(s) | 78, 349, 946 |
| NlaIII | CATG | 5 cut(s) | 103, 406, 470, 761, 1020 |
| NlaIV | GGNNCC | 5 cut(s) | 123, 174, 593, 594, 767 |
| NmuCI | GTSAC | 1 cut(s) | 28 |
| PceI | AGGCCT | 2 cut(s) | 298, 780 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 568 |
| PdmI | GAANNNNTTC | 1 cut(s) | 780 |
| PfeI | GAWTC | 1 cut(s) | 420 |
| PkrI | GCNGC | 4 cut(s) | 49, 54, 370, 1144 |
| PleI | GAGTC | 3 cut(s) | 280, 562, 940 |
| PmaCI | CACGTG | 1 cut(s) | 539 |
| PmlI | CACGTG | 1 cut(s) | 539 |
| PpsI | GAGTC | 3 cut(s) | 280, 562, 940 |
| Ppu21I | YACGTR | 1 cut(s) | 539 |
| PpuMI | RGGWCCY | 1 cut(s) | 592 |
| Psp1406I | AACGTT | 1 cut(s) | 562 |
| Psp5II | RGGWCCY | 1 cut(s) | 592 |
| PspCI | CACGTG | 1 cut(s) | 539 |
| PspFI | CCCAGC | 1 cut(s) | 913 |
| PspN4I | GGNNCC | 5 cut(s) | 123, 174, 593, 594, 767 |
| PspPI | GGNCC | 4 cut(s) | 122, 173, 592, 840 |
| PspPPI | RGGWCCY | 1 cut(s) | 592 |
| PsuI | RGATCY | 1 cut(s) | 78 |
| RsaI | GTAC | 1 cut(s) | 640 |
| RsaNI | GTAC | 1 cut(s) | 639 |
| SaqAI | TTAA | 7 cut(s) | 234, 324, 432, 441, 687, 869, 969 |
| SatI | GCNGC | 4 cut(s) | 48, 53, 369, 1143 |
| Sau3AI | GATC | 3 cut(s) | 78, 349, 946 |
| Sau96I | GGNCC | 4 cut(s) | 122, 173, 592, 840 |
| SchI | GAGTC | 3 cut(s) | 281, 562, 941 |
| ScrFI | CCNGG | 1 cut(s) | 120 |
| SduI | GDGCHC | 1 cut(s) | 118 |
| SfaNI | GCATC | 1 cut(s) | 798 |
| SfcI | CTRYAG | 1 cut(s) | 413 |
| SinI | GGWCC | 2 cut(s) | 592, 840 |
| SmlI | CTYRAG | 1 cut(s) | 827 |
| SmoI | CTYRAG | 1 cut(s) | 827 |
| SpeI | ACTAGT | 1 cut(s) | 68 |
| SseBI | AGGCCT | 2 cut(s) | 298, 780 |
| SsiI | CCGC | 3 cut(s) | 709, 763, 1030 |
| SspI | AATATT | 1 cut(s) | 342 |
| SspMI | CTAG | 4 cut(s) | 21, 69, 308, 1173 |
| StuI | AGGCCT | 2 cut(s) | 298, 780 |
| StyD4I | CCNGG | 1 cut(s) | 118 |
| StyI | CCWWGG | 2 cut(s) | 1016, 1137 |
| TaaI | ACNGT | 1 cut(s) | 91 |
| TaiI | ACGT | 2 cut(s) | 541, 565 |
| TaqI | TCGA | 1 cut(s) | 373 |
| TaqII | GACCGA | 1 cut(s) | 812 |
| TfiI | GAWTC | 1 cut(s) | 420 |
| Tru1I | TTAA | 7 cut(s) | 234, 324, 432, 441, 687, 869, 969 |
| Tru9I | TTAA | 7 cut(s) | 234, 324, 432, 441, 687, 869, 969 |
| TscAI | CASTG | 3 cut(s) | 118, 195, 1096 |
| TseFI | GTSAC | 1 cut(s) | 28 |
| TseI | GCWGC | 4 cut(s) | 47, 52, 368, 1142 |
| Tsp45I | GTSAC | 1 cut(s) | 28 |
| TspDTI | ATGAA | 3 cut(s) | 197, 208, 483 |
| TspGWI | ACGGA | 2 cut(s) | 1127, 1150 |
| TspRI | CASTG | 3 cut(s) | 118, 195, 1096 |
| VpaK11BI | GGWCC | 2 cut(s) | 592, 840 |
| XapI | RAATTY | 4 cut(s) | 437, 470, 522, 1011 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 509 |
| XmiI | GTMKAC | 1 cut(s) | 935 |
| XmnI | GAANNNNTTC | 1 cut(s) | 780 |
| XspI | CTAG | 4 cut(s) | 21, 69, 308, 1173 |