Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 67 - 187 | 1.4e-18 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 3 cut(s) | 43, 257, 657 |
| AccBSI | CCGCTC | 1 cut(s) | 30 |
| AccII | CGCG | 1 cut(s) | 367 |
| AciI | CCGC | 6 cut(s) | 28, 236, 246, 323, 367, 711 |
| AclWI | GGATC | 2 cut(s) | 439, 604 |
| AcoI | YGGCCR | 1 cut(s) | 73 |
| AcsI | RAATTY | 1 cut(s) | 379 |
| AfaI | GTAC | 4 cut(s) | 81, 310, 478, 751 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 42, 48, 298, 366, 367, 561, 585 |
| AgsI | TTSAA | 1 cut(s) | 392 |
| AjnI | CCWGG | 2 cut(s) | 41, 70 |
| AluBI | AGCT | 5 cut(s) | 62, 143, 297, 328, 657 |
| AluI | AGCT | 5 cut(s) | 62, 143, 297, 328, 657 |
| Alw21I | GWGCWC | 2 cut(s) | 64, 330 |
| Alw26I | GTCTC | 2 cut(s) | 26, 456 |
| AlwI | GGATC | 2 cut(s) | 439, 604 |
| AoxI | GGCC | 4 cut(s) | 39, 73, 208, 357 |
| ApoI | RAATTY | 1 cut(s) | 379 |
| AspS9I | GGNCC | 2 cut(s) | 230, 358 |
| AsuC2I | CCSGG | 1 cut(s) | 228 |
| AsuHPI | GGTGA | 1 cut(s) | 58 |
| AvaII | GGWCC | 1 cut(s) | 230 |
| BalI | TGGCCA | 1 cut(s) | 75 |
| BanII | GRGCYC | 2 cut(s) | 64, 330 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 130, 162 |
| Bbv12I | GWGCWC | 2 cut(s) | 64, 330 |
| BccI | CCATC | 1 cut(s) | 200 |
| BciT130I | CCWGG | 2 cut(s) | 43, 72 |
| BcnI | CCSGG | 1 cut(s) | 228 |
| BcoDI | GTCTC | 2 cut(s) | 26, 456 |
| BfaI | CTAG | 1 cut(s) | 405 |
| BfmI | CTRYAG | 3 cut(s) | 264, 603, 652 |
| BfuAI | ACCTGC | 3 cut(s) | 43, 257, 657 |
| BisI | GCNGC | 1 cut(s) | 237 |
| BlsI | GCNGC | 1 cut(s) | 238 |
| Bme1390I | CCNGG | 3 cut(s) | 43, 72, 228 |
| Bme18I | GGWCC | 1 cut(s) | 230 |
| BmgT120I | GGNCC | 2 cut(s) | 230, 358 |
| BmiI | GGNNCC | 2 cut(s) | 170, 231 |
| BmrFI | CCNGG | 3 cut(s) | 43, 72, 228 |
| BmrI | ACTGGG | 1 cut(s) | 709 |
| BmuI | ACTGGG | 1 cut(s) | 709 |
| BpmI | CTGGAG | 1 cut(s) | 440 |
| Bpu10I | CCTNAGC | 1 cut(s) | 293 |
| BpuMI | CCSGG | 1 cut(s) | 228 |
| BsaI | GGTCTC | 2 cut(s) | 26, 456 |
| BsaJI | CCNNGG | 3 cut(s) | 36, 70, 446 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 42, 48, 298, 366, 367, 561, 585 |
| Bse1I | ACTGG | 1 cut(s) | 715 |
| BseBI | CCWGG | 2 cut(s) | 43, 72 |
| BseDI | CCNNGG | 3 cut(s) | 36, 70, 446 |
| BseGI | GGATG | 1 cut(s) | 339 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 42, 48, 298, 366, 367, 561, 585 |
| BseMII | CTCAG | 1 cut(s) | 642 |
| BseNI | ACTGG | 1 cut(s) | 715 |
| BseRI | GAGGAG | 1 cut(s) | 609 |
| BsgI | GTGCAG | 1 cut(s) | 608 |
| Bsh1236I | CGCG | 1 cut(s) | 367 |
| BshFI | GGCC | 4 cut(s) | 41, 75, 210, 359 |
| BsiHKAI | GWGCWC | 2 cut(s) | 64, 330 |
| BsiSI | CCGG | 1 cut(s) | 227 |
| BslFI | GGGAC | 3 cut(s) | 140, 746, 793 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 42, 48, 298, 366, 367, 561, 585 |
| BsmAI | GTCTC | 2 cut(s) | 26, 456 |
| BsmFI | GGGAC | 3 cut(s) | 140, 746, 793 |
| BsmI | GAATGC | 1 cut(s) | 589 |
| BsnI | GGCC | 4 cut(s) | 41, 75, 210, 359 |
| Bso31I | GGTCTC | 2 cut(s) | 26, 456 |
| Bsp1286I | GDGCHC | 2 cut(s) | 64, 330 |
| Bsp143I | GATC | 2 cut(s) | 431, 609 |
| BspACI | CCGC | 6 cut(s) | 28, 236, 246, 323, 367, 711 |
| BspANI | GGCC | 4 cut(s) | 41, 75, 210, 359 |
| BspCNI | CTCAG | 1 cut(s) | 641 |
| BspFNI | CGCG | 1 cut(s) | 367 |
| BspLI | GGNNCC | 2 cut(s) | 170, 231 |
| BspMAI | CTGCAG | 1 cut(s) | 268 |
| BspMI | ACCTGC | 3 cut(s) | 43, 257, 657 |
| BspPI | GGATC | 2 cut(s) | 439, 604 |
| BspTNI | GGTCTC | 2 cut(s) | 26, 456 |
| BsrBI | CCGCTC | 1 cut(s) | 30 |
| BsrI | ACTGG | 1 cut(s) | 715 |
| BssECI | CCNNGG | 3 cut(s) | 36, 70, 446 |
| BssMI | GATC | 2 cut(s) | 431, 609 |
| BssT1I | CCWWGG | 1 cut(s) | 446 |
| Bst2UI | CCWGG | 2 cut(s) | 43, 72 |
| Bst4CI | ACNGT | 1 cut(s) | 754 |
| Bst6I | CTCTTC | 2 cut(s) | 29, 406 |
| BstC8I | GCNNGC | 2 cut(s) | 374, 644 |
| BstDEI | CTNAG | 2 cut(s) | 293, 628 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 46 |
| BstF5I | GGATG | 1 cut(s) | 339 |
| BstFNI | CGCG | 1 cut(s) | 367 |
| BstKTI | GATC | 2 cut(s) | 434, 612 |
| BstMAI | GTCTC | 2 cut(s) | 26, 456 |
| BstMBI | GATC | 2 cut(s) | 431, 609 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 373, 663 |
| BstNI | CCWGG | 2 cut(s) | 43, 72 |
| BstNSI | RCATGY | 3 cut(s) | 243, 646, 808 |
| BstSCI | CCNGG | 3 cut(s) | 41, 70, 226 |
| BstSFI | CTRYAG | 3 cut(s) | 264, 603, 652 |
| BstUI | CGCG | 1 cut(s) | 367 |
| BstX2I | RGATCY | 2 cut(s) | 431, 609 |
| BstYI | RGATCY | 2 cut(s) | 431, 609 |
| BsuRI | GGCC | 4 cut(s) | 41, 75, 210, 359 |
| BtsCI | GGATG | 1 cut(s) | 339 |
| BveI | ACCTGC | 3 cut(s) | 43, 257, 657 |
| Cac8I | GCNNGC | 2 cut(s) | 374, 644 |
| Cfr13I | GGNCC | 2 cut(s) | 230, 358 |
| Csp6I | GTAC | 4 cut(s) | 80, 309, 477, 750 |
| CviAII | CATG | 7 cut(s) | 77, 240, 332, 417, 496, 643, 805 |
| CviQI | GTAC | 4 cut(s) | 80, 309, 477, 750 |
| DdeI | CTNAG | 2 cut(s) | 293, 628 |
| DpnI | GATC | 2 cut(s) | 433, 611 |
| DpnII | GATC | 2 cut(s) | 431, 609 |
| EaeI | YGGCCR | 1 cut(s) | 73 |
| Eam1104I | CTCTTC | 2 cut(s) | 29, 406 |
| EarI | CTCTTC | 2 cut(s) | 29, 406 |
| EciI | GGCGGA | 1 cut(s) | 700 |
| Ecl136II | GAGCTC | 2 cut(s) | 62, 328 |
| Eco130I | CCWWGG | 1 cut(s) | 446 |
| Eco24I | GRGCYC | 2 cut(s) | 64, 330 |
| Eco31I | GGTCTC | 2 cut(s) | 26, 456 |
| Eco47I | GGWCC | 1 cut(s) | 230 |
| Eco53kI | GAGCTC | 2 cut(s) | 62, 328 |
| EcoICRI | GAGCTC | 2 cut(s) | 62, 328 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 46 |
| EcoO109I | RGGNCCY | 1 cut(s) | 230 |
| EcoRII | CCWGG | 2 cut(s) | 41, 70 |
| EcoT14I | CCWWGG | 1 cut(s) | 446 |
| EcoT38I | GRGCYC | 2 cut(s) | 64, 330 |
| ErhI | CCWWGG | 1 cut(s) | 446 |
| FaeI | CATG | 7 cut(s) | 80, 243, 335, 420, 499, 646, 808 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 385, 417 |
| FaqI | GGGAC | 3 cut(s) | 140, 746, 793 |
| FatI | CATG | 7 cut(s) | 76, 239, 331, 416, 495, 642, 804 |
| FauI | CCCGC | 2 cut(s) | 239, 360 |
| Fnu4HI | GCNGC | 1 cut(s) | 237 |
| FokI | GGATG | 1 cut(s) | 326 |
| FriOI | GRGCYC | 2 cut(s) | 64, 330 |
| Fsp4HI | GCNGC | 1 cut(s) | 237 |
| FspBI | CTAG | 1 cut(s) | 405 |
| GluI | GCNGC | 1 cut(s) | 237 |
| GsuI | CTGGAG | 1 cut(s) | 440 |
| HaeIII | GGCC | 4 cut(s) | 41, 75, 210, 359 |
| HapII | CCGG | 1 cut(s) | 227 |
| Hin1II | CATG | 7 cut(s) | 80, 243, 335, 420, 499, 646, 808 |
| HindIII | AAGCTT | 1 cut(s) | 295 |
| HinfI | GANTC | 2 cut(s) | 260, 398 |
| HpaII | CCGG | 1 cut(s) | 227 |
| HphI | GGTGA | 1 cut(s) | 58 |
| Hpy188I | TCNGA | 1 cut(s) | 631 |
| Hpy188III | TCNNGA | 4 cut(s) | 257, 429, 457, 524 |
| HpyAV | CCTTC | 3 cut(s) | 156, 521, 623 |
| HpyCH4III | ACNGT | 1 cut(s) | 754 |
| HpyCH4V | TGCA | 5 cut(s) | 266, 490, 625, 666, 804 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 373, 663 |
| HpyF3I | CTNAG | 2 cut(s) | 293, 628 |
| Hsp92II | CATG | 7 cut(s) | 80, 243, 335, 420, 499, 646, 808 |
| Kzo9I | GATC | 2 cut(s) | 431, 609 |
| LmnI | GCTCC | 6 cut(s) | 35, 59, 148, 174, 325, 333 |
| MaeI | CTAG | 1 cut(s) | 405 |
| MaeIII | GTNAC | 1 cut(s) | 257 |
| MalI | GATC | 2 cut(s) | 433, 611 |
| MbiI | CCGCTC | 1 cut(s) | 30 |
| MboI | GATC | 2 cut(s) | 431, 609 |
| MboII | GAAGA | 3 cut(s) | 16, 393, 567 |
| MfeI | CAATTG | 1 cut(s) | 472 |
| MflI | RGATCY | 2 cut(s) | 431, 609 |
| MhlI | GDGCHC | 2 cut(s) | 64, 330 |
| MlsI | TGGCCA | 1 cut(s) | 75 |
| MluCI | AATT | 5 cut(s) | 353, 379, 472, 548, 556 |
| MluNI | TGGCCA | 1 cut(s) | 75 |
| MlyI | GAGTC | 2 cut(s) | 254, 392 |
| MmeI | TCCRAC | 1 cut(s) | 37 |
| MnlI | CCTC | 8 cut(s) | 46, 77, 186, 627, 630, 685, 738, 778 |
| Mox20I | TGGCCA | 1 cut(s) | 75 |
| MscI | TGGCCA | 1 cut(s) | 75 |
| MseI | TTAA | 1 cut(s) | 192 |
| Msp20I | TGGCCA | 1 cut(s) | 75 |
| MspI | CCGG | 1 cut(s) | 227 |
| MspR9I | CCNGG | 3 cut(s) | 43, 72, 228 |
| MunI | CAATTG | 1 cut(s) | 472 |
| Mva1269I | GAATGC | 1 cut(s) | 589 |
| MvaI | CCWGG | 2 cut(s) | 43, 72 |
| MvnI | CGCG | 1 cut(s) | 367 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 373, 663 |
| NciI | CCSGG | 1 cut(s) | 228 |
| NdeII | GATC | 2 cut(s) | 431, 609 |
| NlaIII | CATG | 7 cut(s) | 80, 243, 335, 420, 499, 646, 808 |
| NlaIV | GGNNCC | 2 cut(s) | 170, 231 |
| NmeAIII | GCCGAG | 1 cut(s) | 17 |
| NmuCI | GTSAC | 1 cut(s) | 257 |
| NspI | RCATGY | 3 cut(s) | 243, 646, 808 |
| PaeI | GCATGC | 1 cut(s) | 646 |
| PctI | GAATGC | 1 cut(s) | 589 |
| PkrI | GCNGC | 1 cut(s) | 238 |
| PleI | GAGTC | 2 cut(s) | 254, 392 |
| PpsI | GAGTC | 2 cut(s) | 254, 392 |
| PpuMI | RGGWCCY | 1 cut(s) | 230 |
| Psp124BI | GAGCTC | 2 cut(s) | 64, 330 |
| Psp5II | RGGWCCY | 1 cut(s) | 230 |
| Psp6I | CCWGG | 2 cut(s) | 41, 70 |
| PspGI | CCWGG | 2 cut(s) | 41, 70 |
| PspN4I | GGNNCC | 2 cut(s) | 170, 231 |
| PspPI | GGNCC | 2 cut(s) | 230, 358 |
| PspPPI | RGGWCCY | 1 cut(s) | 230 |
| PstI | CTGCAG | 1 cut(s) | 268 |
| PsuI | RGATCY | 2 cut(s) | 431, 609 |
| RsaI | GTAC | 4 cut(s) | 81, 310, 478, 751 |
| RsaNI | GTAC | 4 cut(s) | 80, 309, 477, 750 |
| SacI | GAGCTC | 2 cut(s) | 64, 330 |
| SaqAI | TTAA | 1 cut(s) | 192 |
| SatI | GCNGC | 1 cut(s) | 237 |
| Sau3AI | GATC | 2 cut(s) | 431, 609 |
| Sau96I | GGNCC | 2 cut(s) | 230, 358 |
| SchI | GAGTC | 2 cut(s) | 254, 392 |
| ScrFI | CCNGG | 3 cut(s) | 43, 72, 228 |
| SduI | GDGCHC | 2 cut(s) | 64, 330 |
| SfcI | CTRYAG | 3 cut(s) | 264, 603, 652 |
| SinI | GGWCC | 1 cut(s) | 230 |
| SphI | GCATGC | 1 cut(s) | 646 |
| Sse9I | AATT | 5 cut(s) | 353, 379, 472, 548, 556 |
| SsiI | CCGC | 6 cut(s) | 28, 236, 246, 323, 367, 711 |
| SspMI | CTAG | 1 cut(s) | 405 |
| SstI | GAGCTC | 2 cut(s) | 64, 330 |
| StyD4I | CCNGG | 3 cut(s) | 41, 70, 226 |
| StyI | CCWWGG | 1 cut(s) | 446 |
| TaaI | ACNGT | 1 cut(s) | 754 |
| TaqI | TCGA | 2 cut(s) | 351, 523 |
| TasI | AATT | 5 cut(s) | 353, 379, 472, 548, 556 |
| TatI | WGTACW | 1 cut(s) | 476 |
| TauI | GCSGC | 1 cut(s) | 239 |
| Tru1I | TTAA | 1 cut(s) | 192 |
| Tru9I | TTAA | 1 cut(s) | 192 |
| TseFI | GTSAC | 1 cut(s) | 257 |
| Tsp45I | GTSAC | 1 cut(s) | 257 |
| TspDTI | ATGAA | 2 cut(s) | 17, 152 |
| VpaK11BI | GGWCC | 1 cut(s) | 230 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 46 |
| XapI | RAATTY | 1 cut(s) | 379 |
| XceI | RCATGY | 3 cut(s) | 243, 646, 808 |
| XspI | CTAG | 1 cut(s) | 405 |