ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1749 |
| AccB1I | GGYRCC | 5 cut(s) | 1285, 1315, 1375, 1405, 1465 |
| AccII | CGCG | 2 cut(s) | 2445, 2479 |
| AccIII | TCCGGA | 1 cut(s) | 2374 |
| AclWI | GGATC | 2 cut(s) | 2063, 2366 |
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AcuI | CTGAAG | 1 cut(s) | 885 |
| AfaI | GTAC | 2 cut(s) | 74, 2116 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1282 |
| AgsI | TTSAA | 5 cut(s) | 1128, 1227, 1755, 2024, 2184 |
| AjiI | CACGTC | 1 cut(s) | 2508 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2254, 2286 |
| AluBI | AGCT | 2 cut(s) | 9, 1976 |
| AluI | AGCT | 2 cut(s) | 9, 1976 |
| Alw21I | GWGCWC | 1 cut(s) | 2125 |
| Alw26I | GTCTC | 3 cut(s) | 273, 1825, 1868 |
| AlwI | GGATC | 2 cut(s) | 2063, 2366 |
| Aor13HI | TCCGGA | 1 cut(s) | 2374 |
| AoxI | GGCC | 1 cut(s) | 3 |
| ApeKI | GCWGC | 5 cut(s) | 1042, 1528, 1901, 1973, 2165 |
| AspLEI | GCGC | 1 cut(s) | 2479 |
| AsuNHI | GCTAGC | 1 cut(s) | 202 |
| BalI | TGGCCA | 1 cut(s) | 5 |
| BanI | GGYRCC | 5 cut(s) | 1285, 1315, 1375, 1405, 1465 |
| Bbv12I | GWGCWC | 1 cut(s) | 2125 |
| BbvI | GCAGC | 5 cut(s) | 1029, 1515, 1913, 1985, 2152 |
| BceAI | ACGGC | 3 cut(s) | 250, 2059, 2073 |
| BclI | TGATCA | 1 cut(s) | 2005 |
| BcoDI | GTCTC | 3 cut(s) | 273, 1825, 1868 |
| BfaI | CTAG | 3 cut(s) | 203, 2085, 2118 |
| BfmI | CTRYAG | 1 cut(s) | 177 |
| BmgBI | CACGTC | 1 cut(s) | 2508 |
| BmiI | GGNNCC | 7 cut(s) | 1287, 1317, 1377, 1407, 1467, 2272, 2315 |
| BmsI | GCATC | 1 cut(s) | 1974 |
| BmtI | GCTAGC | 1 cut(s) | 206 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2079 |
| BpmI | CTGGAG | 2 cut(s) | 1476, 1506 |
| BsaBI | GATNNNNATC | 2 cut(s) | 2010, 2370 |
| BsaI | GGTCTC | 1 cut(s) | 1868 |
| BsaWI | WCCGGW | 6 cut(s) | 1282, 1312, 1372, 1402, 1462, 2374 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1264, 1294 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1282 |
| Bse1I | ACTGG | 5 cut(s) | 1493, 1523, 1717, 2274, 2391 |
| Bse3DI | GCAATG | 2 cut(s) | 1208, 1553 |
| Bse8I | GATNNNNATC | 2 cut(s) | 2010, 2370 |
| BseAI | TCCGGA | 1 cut(s) | 2374 |
| BseGI | GGATG | 6 cut(s) | 970, 997, 1054, 1114, 1965, 2383 |
| BseJI | GATNNNNATC | 2 cut(s) | 2010, 2370 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1282 |
| BseMI | GCAATG | 2 cut(s) | 1208, 1553 |
| BseNI | ACTGG | 5 cut(s) | 1493, 1523, 1717, 2274, 2391 |
| BseXI | GCAGC | 5 cut(s) | 1029, 1515, 1913, 1985, 2152 |
| BseYI | CCCAGC | 1 cut(s) | 1729 |
| Bsh1236I | CGCG | 2 cut(s) | 2445, 2479 |
| BshFI | GGCC | 1 cut(s) | 5 |
| BshNI | GGYRCC | 5 cut(s) | 1285, 1315, 1375, 1405, 1465 |
| BsiHKAI | GWGCWC | 1 cut(s) | 2125 |
| BsiSI | CCGG | 7 cut(s) | 1283, 1313, 1373, 1403, 1463, 2260, 2375 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1282 |
| BsmAI | GTCTC | 3 cut(s) | 273, 1825, 1868 |
| BsmBI | CGTCTC | 1 cut(s) | 273 |
| BsmI | GAATGC | 1 cut(s) | 1847 |
| BsnI | GGCC | 1 cut(s) | 5 |
| Bso31I | GGTCTC | 1 cut(s) | 1868 |
| Bsp1286I | GDGCHC | 1 cut(s) | 2125 |
| Bsp13I | TCCGGA | 1 cut(s) | 2374 |
| Bsp143I | GATC | 9 cut(s) | 1325, 1415, 1610, 1912, 2005, 2068, 2224, 2320, 2371 |
| Bsp68I | TCGCGA | 1 cut(s) | 2445 |
| BspANI | GGCC | 1 cut(s) | 5 |
| BspEI | TCCGGA | 1 cut(s) | 2374 |
| BspFNI | CGCG | 2 cut(s) | 2445, 2479 |
| BspLI | GGNNCC | 7 cut(s) | 1287, 1317, 1377, 1407, 1467, 2272, 2315 |
| BspOI | GCTAGC | 1 cut(s) | 206 |
| BspPI | GGATC | 2 cut(s) | 2063, 2366 |
| BspT107I | GGYRCC | 5 cut(s) | 1285, 1315, 1375, 1405, 1465 |
| BspTNI | GGTCTC | 1 cut(s) | 1868 |
| BsrDI | GCAATG | 2 cut(s) | 1208, 1553 |
| BsrI | ACTGG | 5 cut(s) | 1493, 1523, 1717, 2274, 2391 |
| BssMI | GATC | 9 cut(s) | 1325, 1415, 1610, 1912, 2005, 2068, 2224, 2320, 2371 |
| Bst4CI | ACNGT | 6 cut(s) | 552, 1180, 1605, 1801, 2318, 2516 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1853, 2174 |
| BstC8I | GCNNGC | 2 cut(s) | 7, 204 |
| BstEII | GGTNACC | 1 cut(s) | 2330 |
| BstF5I | GGATG | 6 cut(s) | 970, 997, 1054, 1114, 1965, 2383 |
| BstFNI | CGCG | 2 cut(s) | 2445, 2479 |
| BstHHI | GCGC | 1 cut(s) | 2479 |
| BstKTI | GATC | 9 cut(s) | 1328, 1418, 1613, 1915, 2008, 2071, 2227, 2323, 2374 |
| BstMAI | GTCTC | 3 cut(s) | 273, 1825, 1868 |
| BstMBI | GATC | 9 cut(s) | 1325, 1415, 1610, 1912, 2005, 2068, 2224, 2320, 2371 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 199, 229, 262, 1853, 2174 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2079 |
| BstPI | GGTNACC | 1 cut(s) | 2330 |
| BstSFI | CTRYAG | 1 cut(s) | 177 |
| BstUI | CGCG | 2 cut(s) | 2445, 2479 |
| BstV1I | GCAGC | 5 cut(s) | 1029, 1515, 1913, 1985, 2152 |
| BstX2I | RGATCY | 1 cut(s) | 2371 |
| BstYI | RGATCY | 1 cut(s) | 2371 |
| BsuRI | GGCC | 1 cut(s) | 5 |
| BtgZI | GCGATG | 1 cut(s) | 1778 |
| BtrI | CACGTC | 1 cut(s) | 2508 |
| BtsCI | GGATG | 6 cut(s) | 970, 997, 1054, 1114, 1965, 2383 |
| BtsI | GCAGTG | 2 cut(s) | 233, 1622 |
| BtsIMutI | CAGTG | 7 cut(s) | 233, 1500, 1530, 1622, 1724, 1797, 2281 |
| BtuMI | TCGCGA | 1 cut(s) | 2445 |
| Cac8I | GCNNGC | 2 cut(s) | 7, 204 |
| CfoI | GCGC | 1 cut(s) | 2479 |
| Csp6I | GTAC | 2 cut(s) | 73, 2115 |
| CspCI | CAANNNNNGTGG | 6 cut(s) | 1191, 1226, 1536, 1571, 2131, 2166 |
| CviAII | CATG | 3 cut(s) | 108, 156, 1928 |
| CviJI | RGCY | 8 cut(s) | 5, 9, 1705, 1791, 1976, 2088, 2299, 2500 |
| CviKI_1 | RGCY | 8 cut(s) | 5, 9, 1705, 1791, 1976, 2088, 2299, 2500 |
| CviQI | GTAC | 2 cut(s) | 73, 2115 |
| DpnI | GATC | 9 cut(s) | 1327, 1417, 1612, 1914, 2007, 2070, 2226, 2322, 2373 |
| DpnII | GATC | 9 cut(s) | 1325, 1415, 1610, 1912, 2005, 2068, 2224, 2320, 2371 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| EciI | GGCGGA | 1 cut(s) | 1533 |
| Eco31I | GGTCTC | 1 cut(s) | 1868 |
| Eco57I | CTGAAG | 1 cut(s) | 885 |
| Eco91I | GGTNACC | 1 cut(s) | 2330 |
| EcoO65I | GGTNACC | 1 cut(s) | 2330 |
| Esp3I | CGTCTC | 1 cut(s) | 273 |
| FaeI | CATG | 3 cut(s) | 111, 159, 1931 |
| FatI | CATG | 3 cut(s) | 107, 155, 1927 |
| FauI | CCCGC | 2 cut(s) | 33, 1978 |
| FbaI | TGATCA | 1 cut(s) | 2005 |
| FokI | GGATG | 6 cut(s) | 957, 984, 1041, 1101, 1952, 2390 |
| FspBI | CTAG | 3 cut(s) | 203, 2085, 2118 |
| GlaI | GCGC | 1 cut(s) | 2478 |
| GsaI | CCCAGC | 1 cut(s) | 1733 |
| GsuI | CTGGAG | 2 cut(s) | 1476, 1506 |
| HaeIII | GGCC | 1 cut(s) | 5 |
| HapII | CCGG | 7 cut(s) | 1283, 1313, 1373, 1403, 1463, 2260, 2375 |
| HhaI | GCGC | 1 cut(s) | 2479 |
| Hin1II | CATG | 3 cut(s) | 111, 159, 1931 |
| Hin6I | GCGC | 1 cut(s) | 2477 |
| HinP1I | GCGC | 1 cut(s) | 2477 |
| HinfI | GANTC | 6 cut(s) | 2138, 2198, 2219, 2237, 2390, 2432 |
| HpaII | CCGG | 7 cut(s) | 1283, 1313, 1373, 1403, 1463, 2260, 2375 |
| Hpy188I | TCNGA | 8 cut(s) | 1689, 1962, 2016, 2203, 2224, 2242, 2313, 2425 |
| Hpy188III | TCNNGA | 4 cut(s) | 1608, 2072, 2375, 2444 |
| Hpy99I | CGWCG | 7 cut(s) | 2094, 2112, 2115, 2259, 2442, 2445, 2469 |
| HpyCH4III | ACNGT | 6 cut(s) | 552, 1180, 1605, 1801, 2318, 2516 |
| HpyCH4IV | ACGT | 3 cut(s) | 2266, 2452, 2507 |
| HpyCH4V | TGCA | 4 cut(s) | 1847, 1856, 1931, 2168 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 199, 229, 262, 1853, 2174 |
| HpySE526I | ACGT | 3 cut(s) | 2266, 2452, 2507 |
| Hsp92II | CATG | 3 cut(s) | 111, 159, 1931 |
| HspAI | GCGC | 1 cut(s) | 2477 |
| Kpn2I | TCCGGA | 1 cut(s) | 2374 |
| Ksp22I | TGATCA | 1 cut(s) | 2005 |
| Kzo9I | GATC | 9 cut(s) | 1325, 1415, 1610, 1912, 2005, 2068, 2224, 2320, 2371 |
| Lsp1109I | GCAGC | 5 cut(s) | 1029, 1515, 1913, 1985, 2152 |
| LweI | GCATC | 1 cut(s) | 1974 |
| MaeI | CTAG | 3 cut(s) | 203, 2085, 2118 |
| MaeII | ACGT | 3 cut(s) | 2266, 2452, 2507 |
| MaeIII | GTNAC | 6 cut(s) | 158, 1599, 1605, 2039, 2330, 2347 |
| MalI | GATC | 9 cut(s) | 1327, 1417, 1612, 1914, 2007, 2070, 2226, 2322, 2373 |
| MboI | GATC | 9 cut(s) | 1325, 1415, 1610, 1912, 2005, 2068, 2224, 2320, 2371 |
| MboII | GAAGA | 8 cut(s) | 1020, 1894, 1897, 2072, 2216, 2228, 2381, 2411 |
| MfeI | CAATTG | 5 cut(s) | 227, 1755, 1857, 2169, 2352 |
| MflI | RGATCY | 1 cut(s) | 2371 |
| MhlI | GDGCHC | 1 cut(s) | 2125 |
| MlsI | TGGCCA | 1 cut(s) | 5 |
| MluNI | TGGCCA | 1 cut(s) | 5 |
| MlyI | GAGTC | 1 cut(s) | 2132 |
| MmeI | TCCRAC | 2 cut(s) | 197, 2535 |
| Mox20I | TGGCCA | 1 cut(s) | 5 |
| MroI | TCCGGA | 1 cut(s) | 2374 |
| MscI | TGGCCA | 1 cut(s) | 5 |
| MseI | TTAA | 2 cut(s) | 1568, 2414 |
| MslI | CAYNNNNRTG | 2 cut(s) | 106, 154 |
| Msp20I | TGGCCA | 1 cut(s) | 5 |
| MspA1I | CMGCKG | 1 cut(s) | 1042 |
| MspI | CCGG | 7 cut(s) | 1283, 1313, 1373, 1403, 1463, 2260, 2375 |
| MunI | CAATTG | 5 cut(s) | 227, 1755, 1857, 2169, 2352 |
| Mva1269I | GAATGC | 1 cut(s) | 1847 |
| MvnI | CGCG | 2 cut(s) | 2445, 2479 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 199, 229, 262, 1853, 2174 |
| NdeII | GATC | 9 cut(s) | 1325, 1415, 1610, 1912, 2005, 2068, 2224, 2320, 2371 |
| NheI | GCTAGC | 1 cut(s) | 202 |
| NlaIII | CATG | 3 cut(s) | 111, 159, 1931 |
| NlaIV | GGNNCC | 7 cut(s) | 1287, 1317, 1377, 1407, 1467, 2272, 2315 |
| NmuCI | GTSAC | 5 cut(s) | 1599, 1605, 2039, 2330, 2347 |
| NruI | TCGCGA | 1 cut(s) | 2445 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 2263, 2449, 2470 |
| PctI | GAATGC | 1 cut(s) | 1847 |
| PfeI | GAWTC | 5 cut(s) | 2198, 2219, 2237, 2390, 2432 |
| PleI | GAGTC | 1 cut(s) | 2132 |
| PpsI | GAGTC | 1 cut(s) | 2132 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2079 |
| PsiI | TTATAA | 1 cut(s) | 1749 |
| PspEI | GGTNACC | 1 cut(s) | 2330 |
| PspFI | CCCAGC | 1 cut(s) | 1729 |
| PspN4I | GGNNCC | 7 cut(s) | 1287, 1317, 1377, 1407, 1467, 2272, 2315 |
| PsuI | RGATCY | 1 cut(s) | 2371 |
| RruI | TCGCGA | 1 cut(s) | 2445 |
| RsaI | GTAC | 2 cut(s) | 74, 2116 |
| RsaNI | GTAC | 2 cut(s) | 73, 2115 |
| RseI | CAYNNNNRTG | 2 cut(s) | 106, 154 |
| SaqAI | TTAA | 2 cut(s) | 1568, 2414 |
| Sau3AI | GATC | 9 cut(s) | 1325, 1415, 1610, 1912, 2005, 2068, 2224, 2320, 2371 |
| SchI | GAGTC | 1 cut(s) | 2132 |
| SduI | GDGCHC | 1 cut(s) | 2125 |
| SfaNI | GCATC | 1 cut(s) | 1974 |
| SfcI | CTRYAG | 1 cut(s) | 177 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 106, 154 |
| SspMI | CTAG | 3 cut(s) | 203, 2085, 2118 |
| TaaI | ACNGT | 6 cut(s) | 552, 1180, 1605, 1801, 2318, 2516 |
| TaiI | ACGT | 3 cut(s) | 2269, 2455, 2510 |
| TfiI | GAWTC | 5 cut(s) | 2198, 2219, 2237, 2390, 2432 |
| Tru1I | TTAA | 2 cut(s) | 1568, 2414 |
| Tru9I | TTAA | 2 cut(s) | 1568, 2414 |
| TscAI | CASTG | 7 cut(s) | 240, 1500, 1530, 1629, 1724, 1804, 2281 |
| TseFI | GTSAC | 5 cut(s) | 1599, 1605, 2039, 2330, 2347 |
| TseI | GCWGC | 5 cut(s) | 1042, 1528, 1901, 1973, 2165 |
| Tsp45I | GTSAC | 5 cut(s) | 1599, 1605, 2039, 2330, 2347 |
| TspDTI | ATGAA | 7 cut(s) | 129, 363, 1197, 1542, 2229, 2382, 2529 |
| TspGWI | ACGGA | 1 cut(s) | 1923 |
| TspRI | CASTG | 7 cut(s) | 240, 1500, 1530, 1629, 1724, 1804, 2281 |
| XspI | CTAG | 3 cut(s) | 203, 2085, 2118 |