ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 198 |
| Acc65I | GGTACC | 1 cut(s) | 574 |
| AccB1I | GGYRCC | 1 cut(s) | 574 |
| AclWI | GGATC | 1 cut(s) | 419 |
| AcoI | YGGCCR | 2 cut(s) | 220, 683 |
| AcsI | RAATTY | 3 cut(s) | 34, 543, 550 |
| AcuI | CTGAAG | 1 cut(s) | 683 |
| AfaI | GTAC | 1 cut(s) | 576 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 138, 365, 453 |
| AgsI | TTSAA | 4 cut(s) | 292, 376, 527, 624 |
| AjnI | CCWGG | 1 cut(s) | 665 |
| AluBI | AGCT | 6 cut(s) | 61, 248, 280, 343, 490, 745 |
| AluI | AGCT | 6 cut(s) | 61, 248, 280, 343, 490, 745 |
| AlwI | GGATC | 1 cut(s) | 419 |
| AoxI | GGCC | 2 cut(s) | 220, 683 |
| ApeKI | GCWGC | 3 cut(s) | 316, 718, 745 |
| ApoI | RAATTY | 3 cut(s) | 34, 543, 550 |
| AseI | ATTAAT | 1 cut(s) | 216 |
| Asp718I | GGTACC | 1 cut(s) | 574 |
| AspLEI | GCGC | 1 cut(s) | 697 |
| AsuHPI | GGTGA | 1 cut(s) | 178 |
| BaeGI | GKGCMC | 1 cut(s) | 328 |
| BalI | TGGCCA | 2 cut(s) | 222, 685 |
| BanI | GGYRCC | 1 cut(s) | 574 |
| BbvI | GCAGC | 3 cut(s) | 328, 730, 732 |
| BccI | CCATC | 2 cut(s) | 170, 383 |
| BciT130I | CCWGG | 1 cut(s) | 667 |
| BclI | TGATCA | 1 cut(s) | 474 |
| BfmI | CTRYAG | 2 cut(s) | 711, 746 |
| BfoI | RGCGCY | 1 cut(s) | 698 |
| BfuAI | ACCTGC | 1 cut(s) | 198 |
| BisI | GCNGC | 3 cut(s) | 317, 719, 746 |
| BlsI | GCNGC | 3 cut(s) | 318, 720, 747 |
| Bme1390I | CCNGG | 1 cut(s) | 667 |
| BmiI | GGNNCC | 1 cut(s) | 576 |
| BmrFI | CCNGG | 1 cut(s) | 667 |
| BmsI | GCATC | 4 cut(s) | 618, 622, 666, 730 |
| BpmI | CTGGAG | 1 cut(s) | 171 |
| BsaJI | CCNNGG | 3 cut(s) | 447, 578, 731 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 138, 365, 453 |
| Bse1I | ACTGG | 1 cut(s) | 256 |
| BseBI | CCWGG | 1 cut(s) | 667 |
| BseDI | CCNNGG | 3 cut(s) | 447, 578, 731 |
| BseGI | GGATG | 1 cut(s) | 394 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 138, 365, 453 |
| BseNI | ACTGG | 1 cut(s) | 256 |
| BseSI | GKGCMC | 1 cut(s) | 328 |
| BseXI | GCAGC | 3 cut(s) | 328, 730, 732 |
| BshFI | GGCC | 2 cut(s) | 222, 685 |
| BshNI | GGYRCC | 1 cut(s) | 574 |
| BslFI | GGGAC | 1 cut(s) | 523 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 138, 365, 453 |
| BsmFI | GGGAC | 1 cut(s) | 523 |
| BsnI | GGCC | 2 cut(s) | 222, 685 |
| Bsp1286I | GDGCHC | 1 cut(s) | 328 |
| Bsp143I | GATC | 2 cut(s) | 411, 474 |
| Bsp19I | CCATGG | 1 cut(s) | 447 |
| BspANI | GGCC | 2 cut(s) | 222, 685 |
| BspLI | GGNNCC | 1 cut(s) | 576 |
| BspMAI | CTGCAG | 2 cut(s) | 715, 750 |
| BspMI | ACCTGC | 1 cut(s) | 198 |
| BspPI | GGATC | 1 cut(s) | 419 |
| BspT107I | GGYRCC | 1 cut(s) | 574 |
| BsrI | ACTGG | 1 cut(s) | 256 |
| BssECI | CCNNGG | 3 cut(s) | 447, 578, 731 |
| BssMI | GATC | 2 cut(s) | 411, 474 |
| BssT1I | CCWWGG | 3 cut(s) | 447, 578, 731 |
| Bst2UI | CCWGG | 1 cut(s) | 667 |
| Bst6I | CTCTTC | 2 cut(s) | 141, 287 |
| BstC8I | GCNNGC | 2 cut(s) | 205, 492 |
| BstDSI | CCRYGG | 1 cut(s) | 447 |
| BstF5I | GGATG | 1 cut(s) | 394 |
| BstH2I | RGCGCY | 1 cut(s) | 698 |
| BstHHI | GCGC | 1 cut(s) | 697 |
| BstKTI | GATC | 2 cut(s) | 414, 477 |
| BstMBI | GATC | 2 cut(s) | 411, 474 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 349, 727, 751 |
| BstNI | CCWGG | 1 cut(s) | 667 |
| BstNSI | RCATGY | 1 cut(s) | 207 |
| BstSCI | CCNGG | 1 cut(s) | 665 |
| BstSFI | CTRYAG | 2 cut(s) | 711, 746 |
| BstSLI | GKGCMC | 1 cut(s) | 328 |
| BstV1I | GCAGC | 3 cut(s) | 328, 730, 732 |
| BsuRI | GGCC | 2 cut(s) | 222, 685 |
| BtgI | CCRYGG | 1 cut(s) | 447 |
| BtsCI | GGATG | 1 cut(s) | 394 |
| BtsI | GCAGTG | 1 cut(s) | 477 |
| BtsIMutI | CAGTG | 2 cut(s) | 477, 744 |
| BveI | ACCTGC | 1 cut(s) | 198 |
| Cac8I | GCNNGC | 2 cut(s) | 205, 492 |
| CfoI | GCGC | 1 cut(s) | 697 |
| CsiI | ACCWGGT | 1 cut(s) | 665 |
| Csp6I | GTAC | 1 cut(s) | 575 |
| CviAII | CATG | 5 cut(s) | 56, 204, 448, 495, 597 |
| CviQI | GTAC | 1 cut(s) | 575 |
| DpnI | GATC | 2 cut(s) | 413, 476 |
| DpnII | GATC | 2 cut(s) | 411, 474 |
| EaeI | YGGCCR | 2 cut(s) | 220, 683 |
| Eam1104I | CTCTTC | 2 cut(s) | 141, 287 |
| EarI | CTCTTC | 2 cut(s) | 141, 287 |
| Eco130I | CCWWGG | 3 cut(s) | 447, 578, 731 |
| Eco57I | CTGAAG | 1 cut(s) | 683 |
| EcoRI | GAATTC | 1 cut(s) | 543 |
| EcoRII | CCWGG | 1 cut(s) | 665 |
| EcoT14I | CCWWGG | 3 cut(s) | 447, 578, 731 |
| EcoT22I | ATGCAT | 1 cut(s) | 681 |
| ErhI | CCWWGG | 3 cut(s) | 447, 578, 731 |
| FaeI | CATG | 5 cut(s) | 59, 207, 451, 498, 600 |
| FaqI | GGGAC | 1 cut(s) | 523 |
| FatI | CATG | 5 cut(s) | 55, 203, 447, 494, 596 |
| FauNDI | CATATG | 1 cut(s) | 258 |
| FbaI | TGATCA | 1 cut(s) | 474 |
| Fnu4HI | GCNGC | 3 cut(s) | 317, 719, 746 |
| FokI | GGATG | 1 cut(s) | 401 |
| Fsp4HI | GCNGC | 3 cut(s) | 317, 719, 746 |
| GlaI | GCGC | 1 cut(s) | 696 |
| GluI | GCNGC | 3 cut(s) | 317, 719, 746 |
| GsuI | CTGGAG | 1 cut(s) | 171 |
| HaeII | RGCGCY | 1 cut(s) | 698 |
| HaeIII | GGCC | 2 cut(s) | 222, 685 |
| HhaI | GCGC | 1 cut(s) | 697 |
| Hin1II | CATG | 5 cut(s) | 59, 207, 451, 498, 600 |
| Hin6I | GCGC | 1 cut(s) | 695 |
| HinP1I | GCGC | 1 cut(s) | 695 |
| HincII | GTYRAC | 1 cut(s) | 382 |
| HindII | GTYRAC | 1 cut(s) | 382 |
| HinfI | GANTC | 2 cut(s) | 533, 703 |
| HpaI | GTTAAC | 1 cut(s) | 382 |
| HphI | GGTGA | 1 cut(s) | 178 |
| Hpy166II | GTNNAC | 4 cut(s) | 337, 382, 644, 769 |
| Hpy188I | TCNGA | 2 cut(s) | 702, 708 |
| Hpy188III | TCNNGA | 4 cut(s) | 188, 289, 540, 655 |
| Hpy8I | GTNNAC | 4 cut(s) | 337, 382, 644, 769 |
| HpyAV | CCTTC | 1 cut(s) | 652 |
| HpyCH4IV | ACGT | 1 cut(s) | 225 |
| HpyCH4V | TGCA | 9 cut(s) | 4, 68, 207, 494, 613, 631, 679, 713, 748 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 349, 727, 751 |
| HpySE526I | ACGT | 1 cut(s) | 225 |
| Hsp92II | CATG | 5 cut(s) | 59, 207, 451, 498, 600 |
| HspAI | GCGC | 1 cut(s) | 695 |
| KpnI | GGTACC | 1 cut(s) | 578 |
| Ksp22I | TGATCA | 1 cut(s) | 474 |
| KspAI | GTTAAC | 1 cut(s) | 382 |
| Kzo9I | GATC | 2 cut(s) | 411, 474 |
| LmnI | GCTCC | 2 cut(s) | 277, 561 |
| LpnPI | CCDG | 8 cut(s) | 193, 201, 237, 260, 404, 575, 652, 679 |
| Lsp1109I | GCAGC | 3 cut(s) | 328, 730, 732 |
| LweI | GCATC | 4 cut(s) | 618, 622, 666, 730 |
| MabI | ACCWGGT | 1 cut(s) | 665 |
| MaeII | ACGT | 1 cut(s) | 225 |
| MalI | GATC | 2 cut(s) | 413, 476 |
| MboI | GATC | 2 cut(s) | 411, 474 |
| MboII | GAAGA | 3 cut(s) | 128, 304, 613 |
| MfeI | CAATTG | 1 cut(s) | 98 |
| MhlI | GDGCHC | 1 cut(s) | 328 |
| MlsI | TGGCCA | 2 cut(s) | 222, 685 |
| MluNI | TGGCCA | 2 cut(s) | 222, 685 |
| MmeI | TCCRAC | 1 cut(s) | 731 |
| MnlI | CCTC | 6 cut(s) | 142, 288, 398, 402, 447, 744 |
| Mox20I | TGGCCA | 2 cut(s) | 222, 685 |
| Mph1103I | ATGCAT | 1 cut(s) | 681 |
| MscI | TGGCCA | 2 cut(s) | 222, 685 |
| MseI | TTAA | 4 cut(s) | 77, 216, 264, 381 |
| MslI | CAYNNNNRTG | 2 cut(s) | 228, 623 |
| Msp20I | TGGCCA | 2 cut(s) | 222, 685 |
| MspR9I | CCNGG | 1 cut(s) | 667 |
| MunI | CAATTG | 1 cut(s) | 98 |
| MvaI | CCWGG | 1 cut(s) | 667 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 349, 727, 751 |
| NcoI | CCATGG | 1 cut(s) | 447 |
| NdeI | CATATG | 1 cut(s) | 258 |
| NdeII | GATC | 2 cut(s) | 411, 474 |
| NlaIII | CATG | 5 cut(s) | 59, 207, 451, 498, 600 |
| NlaIV | GGNNCC | 1 cut(s) | 576 |
| NsiI | ATGCAT | 1 cut(s) | 681 |
| NspI | RCATGY | 1 cut(s) | 207 |
| PaeI | GCATGC | 1 cut(s) | 207 |
| PfeI | GAWTC | 2 cut(s) | 533, 703 |
| PkrI | GCNGC | 3 cut(s) | 318, 720, 747 |
| PshBI | ATTAAT | 1 cut(s) | 216 |
| Psp6I | CCWGG | 1 cut(s) | 665 |
| PspGI | CCWGG | 1 cut(s) | 665 |
| PspN4I | GGNNCC | 1 cut(s) | 576 |
| PstI | CTGCAG | 2 cut(s) | 715, 750 |
| RsaI | GTAC | 1 cut(s) | 576 |
| RsaNI | GTAC | 1 cut(s) | 575 |
| RseI | CAYNNNNRTG | 2 cut(s) | 228, 623 |
| SaqAI | TTAA | 4 cut(s) | 77, 216, 264, 381 |
| SatI | GCNGC | 3 cut(s) | 317, 719, 746 |
| Sau3AI | GATC | 2 cut(s) | 411, 474 |
| ScrFI | CCNGG | 1 cut(s) | 667 |
| SduI | GDGCHC | 1 cut(s) | 328 |
| SexAI | ACCWGGT | 1 cut(s) | 665 |
| SfaNI | GCATC | 4 cut(s) | 618, 622, 666, 730 |
| SfcI | CTRYAG | 2 cut(s) | 711, 746 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 228, 623 |
| SphI | GCATGC | 1 cut(s) | 207 |
| StyD4I | CCNGG | 1 cut(s) | 665 |
| StyI | CCWWGG | 3 cut(s) | 447, 578, 731 |
| TaiI | ACGT | 1 cut(s) | 228 |
| TaqI | TCGA | 1 cut(s) | 486 |
| TfiI | GAWTC | 2 cut(s) | 533, 703 |
| Tru1I | TTAA | 4 cut(s) | 77, 216, 264, 381 |
| Tru9I | TTAA | 4 cut(s) | 77, 216, 264, 381 |
| TscAI | CASTG | 2 cut(s) | 477, 744 |
| TseI | GCWGC | 3 cut(s) | 316, 718, 745 |
| TspDTI | ATGAA | 1 cut(s) | 39 |
| TspGWI | ACGGA | 1 cut(s) | 401 |
| TspRI | CASTG | 2 cut(s) | 477, 744 |
| VspI | ATTAAT | 1 cut(s) | 216 |
| XapI | RAATTY | 3 cut(s) | 34, 543, 550 |
| XceI | RCATGY | 1 cut(s) | 207 |
| Zsp2I | ATGCAT | 1 cut(s) | 681 |