ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 815 |
| AccI | GTMKAC | 2 cut(s) | 300, 879 |
| AccII | CGCG | 2 cut(s) | 774, 1173 |
| AciI | CCGC | 3 cut(s) | 394, 1030, 1173 |
| AclWI | GGATC | 5 cut(s) | 8, 21, 72, 515, 631 |
| AcsI | RAATTY | 3 cut(s) | 85, 526, 990 |
| AcuI | CTGAAG | 1 cut(s) | 1152 |
| AfaI | GTAC | 3 cut(s) | 103, 295, 911 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1172 |
| AflII | CTTAAG | 1 cut(s) | 488 |
| AgsI | TTSAA | 8 cut(s) | 90, 157, 407, 471, 501, 513, 628, 779 |
| AlwI | GGATC | 5 cut(s) | 8, 21, 72, 515, 631 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 377 |
| AoxI | GGCC | 1 cut(s) | 221 |
| ApeKI | GCWGC | 2 cut(s) | 374, 386 |
| ApoI | RAATTY | 3 cut(s) | 85, 526, 990 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 926, 958 |
| AspS9I | GGNCC | 4 cut(s) | 201, 285, 652, 1175 |
| AsuC2I | CCSGG | 1 cut(s) | 1146 |
| AsuHPI | GGTGA | 4 cut(s) | 59, 92, 818, 1093 |
| AvaII | GGWCC | 4 cut(s) | 201, 285, 652, 1175 |
| AxyI | CCTNAGG | 1 cut(s) | 820 |
| BamHI | GGATCC | 1 cut(s) | 13 |
| BanI | GGYRCC | 1 cut(s) | 815 |
| BbsI | GAAGAC | 2 cut(s) | 81, 1140 |
| BbvI | GCAGC | 2 cut(s) | 361, 373 |
| BccI | CCATC | 5 cut(s) | 55, 353, 447, 842, 1037 |
| BciVI | GTATCC | 1 cut(s) | 818 |
| BcnI | CCSGG | 1 cut(s) | 1146 |
| BfaI | CTAG | 3 cut(s) | 540, 1008, 1020 |
| BfmI | CTRYAG | 1 cut(s) | 880 |
| BfrI | CTTAAG | 1 cut(s) | 488 |
| BfuI | GTATCC | 1 cut(s) | 818 |
| BisI | GCNGC | 2 cut(s) | 375, 387 |
| BlsI | GCNGC | 2 cut(s) | 376, 388 |
| Bme1390I | CCNGG | 1 cut(s) | 1146 |
| Bme18I | GGWCC | 4 cut(s) | 201, 285, 652, 1175 |
| BmgT120I | GGNCC | 4 cut(s) | 201, 285, 652, 1175 |
| BmiI | GGNNCC | 4 cut(s) | 15, 286, 817, 834 |
| BmrFI | CCNGG | 1 cut(s) | 1146 |
| BmrI | ACTGGG | 1 cut(s) | 358 |
| BmsI | GCATC | 2 cut(s) | 407, 706 |
| BmuI | ACTGGG | 1 cut(s) | 358 |
| BpiI | GAAGAC | 2 cut(s) | 81, 1140 |
| BpmI | CTGGAG | 1 cut(s) | 819 |
| Bpu10I | CCTNAGC | 1 cut(s) | 938 |
| BpuEI | CTTGAG | 3 cut(s) | 197, 264, 643 |
| BpuMI | CCSGG | 1 cut(s) | 1146 |
| Bsa29I | ATCGAT | 1 cut(s) | 735 |
| BsaJI | CCNNGG | 1 cut(s) | 791 |
| BsaWI | WCCGGW | 1 cut(s) | 985 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1172 |
| Bse118I | RCCGGY | 1 cut(s) | 812 |
| Bse1I | ACTGG | 3 cut(s) | 109, 353, 808 |
| Bse21I | CCTNAGG | 1 cut(s) | 820 |
| BseCI | ATCGAT | 1 cut(s) | 735 |
| BseDI | CCNNGG | 1 cut(s) | 791 |
| BseGI | GGATG | 6 cut(s) | 364, 439, 532, 853, 1048, 1078 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1172 |
| BseNI | ACTGG | 3 cut(s) | 109, 353, 808 |
| BseRI | GAGGAG | 1 cut(s) | 53 |
| BseXI | GCAGC | 2 cut(s) | 361, 373 |
| BseYI | CCCAGC | 1 cut(s) | 1038 |
| Bsh1236I | CGCG | 2 cut(s) | 774, 1173 |
| Bsh1285I | CGRYCG | 1 cut(s) | 986 |
| BshFI | GGCC | 1 cut(s) | 223 |
| BshNI | GGYRCC | 1 cut(s) | 815 |
| BshVI | ATCGAT | 1 cut(s) | 735 |
| BsiEI | CGRYCG | 1 cut(s) | 986 |
| BsiSI | CCGG | 3 cut(s) | 813, 986, 1145 |
| BslFI | GGGAC | 3 cut(s) | 298, 592, 809 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1172 |
| BsmFI | GGGAC | 3 cut(s) | 298, 592, 809 |
| BsmI | GAATGC | 1 cut(s) | 679 |
| BsnI | GGCC | 1 cut(s) | 223 |
| Bsp143I | GATC | 4 cut(s) | 13, 64, 520, 636 |
| BspACI | CCGC | 3 cut(s) | 394, 1030, 1173 |
| BspANI | GGCC | 1 cut(s) | 223 |
| BspDI | ATCGAT | 1 cut(s) | 735 |
| BspFNI | CGCG | 2 cut(s) | 774, 1173 |
| BspLI | GGNNCC | 4 cut(s) | 15, 286, 817, 834 |
| BspPI | GGATC | 5 cut(s) | 8, 21, 72, 515, 631 |
| BspT107I | GGYRCC | 1 cut(s) | 815 |
| BspTI | CTTAAG | 1 cut(s) | 488 |
| BsrFI | RCCGGY | 1 cut(s) | 812 |
| BsrI | ACTGG | 3 cut(s) | 109, 353, 808 |
| BssAI | RCCGGY | 1 cut(s) | 812 |
| BssECI | CCNNGG | 1 cut(s) | 791 |
| BssMI | GATC | 4 cut(s) | 13, 64, 520, 636 |
| BssNAI | GTATAC | 1 cut(s) | 301 |
| BssT1I | CCWWGG | 1 cut(s) | 791 |
| Bst1107I | GTATAC | 1 cut(s) | 301 |
| Bst4CI | ACNGT | 3 cut(s) | 80, 298, 884 |
| Bst6I | CTCTTC | 2 cut(s) | 225, 514 |
| BstAFI | CTTAAG | 1 cut(s) | 488 |
| BstC8I | GCNNGC | 2 cut(s) | 396, 772 |
| BstDEI | CTNAG | 4 cut(s) | 163, 668, 820, 938 |
| BstF5I | GGATG | 6 cut(s) | 364, 439, 532, 853, 1048, 1078 |
| BstFNI | CGCG | 2 cut(s) | 774, 1173 |
| BstKTI | GATC | 4 cut(s) | 16, 67, 523, 639 |
| BstMBI | GATC | 4 cut(s) | 13, 64, 520, 636 |
| BstMCI | CGRYCG | 1 cut(s) | 986 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 181, 374, 383, 395 |
| BstNSI | RCATGY | 1 cut(s) | 549 |
| BstSCI | CCNGG | 1 cut(s) | 1144 |
| BstSFI | CTRYAG | 1 cut(s) | 880 |
| BstUI | CGCG | 2 cut(s) | 774, 1173 |
| BstV1I | GCAGC | 2 cut(s) | 361, 373 |
| BstV2I | GAAGAC | 2 cut(s) | 81, 1140 |
| BstX2I | RGATCY | 1 cut(s) | 13 |
| BstYI | RGATCY | 1 cut(s) | 13 |
| BstZ17I | GTATAC | 1 cut(s) | 301 |
| Bsu15I | ATCGAT | 1 cut(s) | 735 |
| Bsu36I | CCTNAGG | 1 cut(s) | 820 |
| BsuI | GTATCC | 1 cut(s) | 818 |
| BsuRI | GGCC | 1 cut(s) | 223 |
| BsuTUI | ATCGAT | 1 cut(s) | 735 |
| BtgZI | GCGATG | 1 cut(s) | 531 |
| BtsCI | GGATG | 6 cut(s) | 364, 439, 532, 853, 1048, 1078 |
| BtsI | GCAGTG | 1 cut(s) | 339 |
| BtsIMutI | CAGTG | 1 cut(s) | 339 |
| Cac8I | GCNNGC | 2 cut(s) | 396, 772 |
| CaiI | CAGNNNCTG | 1 cut(s) | 377 |
| Cfr10I | RCCGGY | 1 cut(s) | 812 |
| Cfr13I | GGNCC | 4 cut(s) | 201, 285, 652, 1175 |
| ClaI | ATCGAT | 1 cut(s) | 735 |
| Csp6I | GTAC | 3 cut(s) | 102, 294, 910 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1099, 1134 |
| CviAII | CATG | 4 cut(s) | 546, 799, 829, 1027 |
| CviQI | GTAC | 3 cut(s) | 102, 294, 910 |
| DdeI | CTNAG | 4 cut(s) | 163, 668, 820, 938 |
| DpnI | GATC | 4 cut(s) | 15, 66, 522, 638 |
| DpnII | GATC | 4 cut(s) | 13, 64, 520, 636 |
| Eam1104I | CTCTTC | 2 cut(s) | 225, 514 |
| EarI | CTCTTC | 2 cut(s) | 225, 514 |
| Eco130I | CCWWGG | 1 cut(s) | 791 |
| Eco147I | AGGCCT | 1 cut(s) | 223 |
| Eco32I | GATATC | 1 cut(s) | 733 |
| Eco47I | GGWCC | 4 cut(s) | 201, 285, 652, 1175 |
| Eco57I | CTGAAG | 1 cut(s) | 1152 |
| Eco81I | CCTNAGG | 1 cut(s) | 820 |
| EcoO109I | RGGNCCY | 1 cut(s) | 285 |
| EcoRV | GATATC | 1 cut(s) | 733 |
| EcoT14I | CCWWGG | 1 cut(s) | 791 |
| ErhI | CCWWGG | 1 cut(s) | 791 |
| FaeI | CATG | 4 cut(s) | 549, 802, 832, 1030 |
| FaqI | GGGAC | 3 cut(s) | 298, 592, 809 |
| FatI | CATG | 4 cut(s) | 545, 798, 828, 1026 |
| FauI | CCCGC | 1 cut(s) | 387 |
| FauNDI | CATATG | 1 cut(s) | 893 |
| FblI | GTMKAC | 2 cut(s) | 300, 879 |
| Fnu4HI | GCNGC | 2 cut(s) | 375, 387 |
| FokI | GGATG | 6 cut(s) | 371, 426, 519, 860, 1055, 1085 |
| Fsp4HI | GCNGC | 2 cut(s) | 375, 387 |
| FspBI | CTAG | 3 cut(s) | 540, 1008, 1020 |
| GluI | GCNGC | 2 cut(s) | 375, 387 |
| GsaI | CCCAGC | 1 cut(s) | 1042 |
| GsuI | CTGGAG | 1 cut(s) | 819 |
| HaeIII | GGCC | 1 cut(s) | 223 |
| HapII | CCGG | 3 cut(s) | 813, 986, 1145 |
| Hin1II | CATG | 4 cut(s) | 549, 802, 832, 1030 |
| HindIII | AAGCTT | 1 cut(s) | 431 |
| HinfI | GANTC | 1 cut(s) | 493 |
| HpaII | CCGG | 3 cut(s) | 813, 986, 1145 |
| HphI | GGTGA | 4 cut(s) | 59, 92, 818, 1093 |
| Hpy166II | GTNNAC | 2 cut(s) | 301, 880 |
| Hpy188I | TCNGA | 4 cut(s) | 7, 137, 464, 996 |
| Hpy188III | TCNNGA | 4 cut(s) | 660, 701, 836, 845 |
| Hpy8I | GTNNAC | 2 cut(s) | 301, 880 |
| HpyAV | CCTTC | 3 cut(s) | 507, 622, 861 |
| HpyCH4III | ACNGT | 3 cut(s) | 80, 298, 884 |
| HpyCH4V | TGCA | 4 cut(s) | 332, 679, 697, 1052 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 181, 374, 383, 395 |
| HpyF3I | CTNAG | 4 cut(s) | 163, 668, 820, 938 |
| Hsp92II | CATG | 4 cut(s) | 549, 802, 832, 1030 |
| Kzo9I | GATC | 4 cut(s) | 13, 64, 520, 636 |
| LmnI | GCTCC | 2 cut(s) | 464, 838 |
| Lsp1109I | GCAGC | 2 cut(s) | 361, 373 |
| LweI | GCATC | 2 cut(s) | 407, 706 |
| MaeI | CTAG | 3 cut(s) | 540, 1008, 1020 |
| MaeIII | GTNAC | 3 cut(s) | 26, 116, 448 |
| MalI | GATC | 4 cut(s) | 15, 66, 522, 638 |
| MboI | GATC | 4 cut(s) | 13, 64, 520, 636 |
| MboII | GAAGA | 5 cut(s) | 70, 86, 242, 501, 1145 |
| MfeI | CAATTG | 1 cut(s) | 1098 |
| MflI | RGATCY | 1 cut(s) | 13 |
| MluCI | AATT | 8 cut(s) | 85, 147, 207, 254, 526, 690, 990, 1098 |
| MmeI | TCCRAC | 3 cut(s) | 324, 664, 1071 |
| MnlI | CCTC | 9 cut(s) | 31, 34, 205, 349, 656, 665, 832, 1069, 1109 |
| MseI | TTAA | 2 cut(s) | 489, 746 |
| MslI | CAYNNNNRTG | 2 cut(s) | 444, 702 |
| MspA1I | CMGCKG | 1 cut(s) | 374 |
| MspCI | CTTAAG | 1 cut(s) | 488 |
| MspI | CCGG | 3 cut(s) | 813, 986, 1145 |
| MspR9I | CCNGG | 1 cut(s) | 1146 |
| MunI | CAATTG | 1 cut(s) | 1098 |
| Mva1269I | GAATGC | 1 cut(s) | 679 |
| MvnI | CGCG | 2 cut(s) | 774, 1173 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 181, 374, 383, 395 |
| NciI | CCSGG | 1 cut(s) | 1146 |
| NdeI | CATATG | 1 cut(s) | 893 |
| NdeII | GATC | 4 cut(s) | 13, 64, 520, 636 |
| NlaIII | CATG | 4 cut(s) | 549, 802, 832, 1030 |
| NlaIV | GGNNCC | 4 cut(s) | 15, 286, 817, 834 |
| NmuCI | GTSAC | 1 cut(s) | 26 |
| NspI | RCATGY | 1 cut(s) | 549 |
| PceI | AGGCCT | 1 cut(s) | 223 |
| PctI | GAATGC | 1 cut(s) | 679 |
| PfeI | GAWTC | 1 cut(s) | 493 |
| PkrI | GCNGC | 2 cut(s) | 376, 388 |
| PpuMI | RGGWCCY | 1 cut(s) | 285 |
| Psp5II | RGGWCCY | 1 cut(s) | 285 |
| PspFI | CCCAGC | 1 cut(s) | 1038 |
| PspN4I | GGNNCC | 4 cut(s) | 15, 286, 817, 834 |
| PspPI | GGNCC | 4 cut(s) | 201, 285, 652, 1175 |
| PspPPI | RGGWCCY | 1 cut(s) | 285 |
| PstNI | CAGNNNCTG | 1 cut(s) | 377 |
| PsuI | RGATCY | 1 cut(s) | 13 |
| PvuII | CAGCTG | 1 cut(s) | 374 |
| RsaI | GTAC | 3 cut(s) | 103, 295, 911 |
| RsaNI | GTAC | 3 cut(s) | 102, 294, 910 |
| RseI | CAYNNNNRTG | 2 cut(s) | 444, 702 |
| SaqAI | TTAA | 2 cut(s) | 489, 746 |
| SatI | GCNGC | 2 cut(s) | 375, 387 |
| Sau3AI | GATC | 4 cut(s) | 13, 64, 520, 636 |
| Sau96I | GGNCC | 4 cut(s) | 201, 285, 652, 1175 |
| ScrFI | CCNGG | 1 cut(s) | 1146 |
| SfaNI | GCATC | 2 cut(s) | 407, 706 |
| SfcI | CTRYAG | 1 cut(s) | 880 |
| SinI | GGWCC | 4 cut(s) | 201, 285, 652, 1175 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 444, 702 |
| SmlI | CTYRAG | 4 cut(s) | 176, 279, 488, 658 |
| SmoI | CTYRAG | 4 cut(s) | 176, 279, 488, 658 |
| Sse9I | AATT | 8 cut(s) | 85, 147, 207, 254, 526, 690, 990, 1098 |
| SseBI | AGGCCT | 1 cut(s) | 223 |
| SsiI | CCGC | 3 cut(s) | 394, 1030, 1173 |
| SspI | AATATT | 2 cut(s) | 34, 593 |
| SspMI | CTAG | 3 cut(s) | 540, 1008, 1020 |
| StuI | AGGCCT | 1 cut(s) | 223 |
| StyD4I | CCNGG | 1 cut(s) | 1144 |
| StyI | CCWWGG | 1 cut(s) | 791 |
| TaaI | ACNGT | 3 cut(s) | 80, 298, 884 |
| TaqI | TCGA | 2 cut(s) | 735, 970 |
| TasI | AATT | 8 cut(s) | 85, 147, 207, 254, 526, 690, 990, 1098 |
| TatI | WGTACW | 1 cut(s) | 909 |
| TfiI | GAWTC | 1 cut(s) | 493 |
| Tru1I | TTAA | 2 cut(s) | 489, 746 |
| Tru9I | TTAA | 2 cut(s) | 489, 746 |
| TscAI | CASTG | 1 cut(s) | 339 |
| TseFI | GTSAC | 1 cut(s) | 26 |
| TseI | GCWGC | 2 cut(s) | 374, 386 |
| Tsp45I | GTSAC | 1 cut(s) | 26 |
| TspDTI | ATGAA | 2 cut(s) | 333, 448 |
| TspRI | CASTG | 1 cut(s) | 339 |
| Vha464I | CTTAAG | 1 cut(s) | 488 |
| VpaK11BI | GGWCC | 4 cut(s) | 201, 285, 652, 1175 |
| XapI | RAATTY | 3 cut(s) | 85, 526, 990 |
| XceI | RCATGY | 1 cut(s) | 549 |
| XmiI | GTMKAC | 2 cut(s) | 300, 879 |
| XspI | CTAG | 3 cut(s) | 540, 1008, 1020 |