ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-RVT | PF13966 | 51 - 99 | 2.3e-12 | zinc-binding in reverse transcriptase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 84 |
| AccB1I | GGYRCC | 1 cut(s) | 642 |
| AccI | GTMKAC | 1 cut(s) | 354 |
| AclWI | GGATC | 1 cut(s) | 106 |
| AcoI | YGGCCR | 1 cut(s) | 166 |
| AcsI | RAATTY | 2 cut(s) | 314, 442 |
| AcuI | CTGAAG | 2 cut(s) | 101, 270 |
| AcyI | GRCGYC | 1 cut(s) | 643 |
| AfaI | GTAC | 1 cut(s) | 6 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 656 |
| AgsI | TTSAA | 4 cut(s) | 271, 320, 521, 583 |
| AjnI | CCWGG | 1 cut(s) | 69 |
| AluBI | AGCT | 3 cut(s) | 121, 524, 786 |
| AluI | AGCT | 3 cut(s) | 121, 524, 786 |
| Alw21I | GWGCWC | 2 cut(s) | 388, 619 |
| AlwI | GGATC | 1 cut(s) | 106 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 124 |
| AoxI | GGCC | 1 cut(s) | 166 |
| ApoI | RAATTY | 2 cut(s) | 314, 442 |
| AspLEI | GCGC | 1 cut(s) | 645 |
| AsuHPI | GGTGA | 1 cut(s) | 676 |
| BanI | GGYRCC | 1 cut(s) | 642 |
| BbsI | GAAGAC | 2 cut(s) | 359, 756 |
| Bbv12I | GWGCWC | 2 cut(s) | 388, 619 |
| BccI | CCATC | 3 cut(s) | 400, 654, 674 |
| BceAI | ACGGC | 1 cut(s) | 153 |
| BciT130I | CCWGG | 1 cut(s) | 71 |
| BclI | TGATCA | 1 cut(s) | 736 |
| BfaI | CTAG | 6 cut(s) | 219, 447, 528, 597, 621, 783 |
| BfoI | RGCGCY | 1 cut(s) | 646 |
| BfuAI | ACCTGC | 1 cut(s) | 84 |
| Bme1390I | CCNGG | 1 cut(s) | 71 |
| BmiI | GGNNCC | 2 cut(s) | 644, 757 |
| BmrFI | CCNGG | 1 cut(s) | 71 |
| BmrI | ACTGGG | 1 cut(s) | 330 |
| BmsI | GCATC | 2 cut(s) | 154, 540 |
| BmuI | ACTGGG | 1 cut(s) | 330 |
| BpiI | GAAGAC | 2 cut(s) | 359, 756 |
| BpmI | CTGGAG | 1 cut(s) | 564 |
| BpuEI | CTTGAG | 1 cut(s) | 650 |
| BsaBI | GATNNNNATC | 1 cut(s) | 38 |
| BsaHI | GRCGYC | 1 cut(s) | 643 |
| BsaJI | CCNNGG | 1 cut(s) | 69 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 682, 712 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 656 |
| Bse1I | ACTGG | 3 cut(s) | 336, 379, 547 |
| Bse3DI | GCAATG | 1 cut(s) | 101 |
| Bse8I | GATNNNNATC | 1 cut(s) | 38 |
| BseBI | CCWGG | 1 cut(s) | 71 |
| BseDI | CCNNGG | 1 cut(s) | 69 |
| BseGI | GGATG | 3 cut(s) | 411, 507, 665 |
| BseJI | GATNNNNATC | 1 cut(s) | 38 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 656 |
| BseMI | GCAATG | 1 cut(s) | 101 |
| BseMII | CTCAG | 1 cut(s) | 171 |
| BseNI | ACTGG | 3 cut(s) | 336, 379, 547 |
| BseRI | GAGGAG | 1 cut(s) | 639 |
| BshFI | GGCC | 1 cut(s) | 168 |
| BshNI | GGYRCC | 1 cut(s) | 642 |
| BsiHKAI | GWGCWC | 2 cut(s) | 388, 619 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 656 |
| BsnI | GGCC | 1 cut(s) | 168 |
| Bsp1286I | GDGCHC | 2 cut(s) | 388, 619 |
| Bsp143I | GATC | 3 cut(s) | 111, 568, 736 |
| BspANI | GGCC | 1 cut(s) | 168 |
| BspCNI | CTCAG | 1 cut(s) | 172 |
| BspLI | GGNNCC | 2 cut(s) | 644, 757 |
| BspMI | ACCTGC | 1 cut(s) | 84 |
| BspPI | GGATC | 1 cut(s) | 106 |
| BspT107I | GGYRCC | 1 cut(s) | 642 |
| BsrDI | GCAATG | 1 cut(s) | 101 |
| BsrI | ACTGG | 3 cut(s) | 336, 379, 547 |
| BssECI | CCNNGG | 1 cut(s) | 69 |
| BssMI | GATC | 3 cut(s) | 111, 568, 736 |
| BssNI | GRCGYC | 1 cut(s) | 643 |
| Bst2UI | CCWGG | 1 cut(s) | 71 |
| Bst4CI | ACNGT | 2 cut(s) | 9, 470 |
| Bst6I | CTCTTC | 1 cut(s) | 688 |
| BstACI | GRCGYC | 1 cut(s) | 643 |
| BstDEI | CTNAG | 1 cut(s) | 180 |
| BstF5I | GGATG | 3 cut(s) | 411, 507, 665 |
| BstH2I | RGCGCY | 1 cut(s) | 646 |
| BstHHI | GCGC | 1 cut(s) | 645 |
| BstKTI | GATC | 3 cut(s) | 114, 571, 739 |
| BstMBI | GATC | 3 cut(s) | 111, 568, 736 |
| BstNI | CCWGG | 1 cut(s) | 71 |
| BstSCI | CCNGG | 1 cut(s) | 69 |
| BstV2I | GAAGAC | 2 cut(s) | 359, 756 |
| BsuRI | GGCC | 1 cut(s) | 168 |
| BtsCI | GGATG | 3 cut(s) | 411, 507, 665 |
| BtsIMutI | CAGTG | 2 cut(s) | 14, 675 |
| BveI | ACCTGC | 1 cut(s) | 84 |
| CaiI | CAGNNNCTG | 1 cut(s) | 124 |
| CfoI | GCGC | 1 cut(s) | 645 |
| Csp6I | GTAC | 1 cut(s) | 5 |
| CviAII | CATG | 2 cut(s) | 164, 482 |
| CviQI | GTAC | 1 cut(s) | 5 |
| DdeI | CTNAG | 1 cut(s) | 180 |
| DinI | GGCGCC | 1 cut(s) | 644 |
| DpnI | GATC | 3 cut(s) | 113, 570, 738 |
| DpnII | GATC | 3 cut(s) | 111, 568, 736 |
| EaeI | YGGCCR | 1 cut(s) | 166 |
| Eam1104I | CTCTTC | 1 cut(s) | 688 |
| EarI | CTCTTC | 1 cut(s) | 688 |
| Eco57I | CTGAAG | 2 cut(s) | 101, 270 |
| EcoRI | GAATTC | 1 cut(s) | 442 |
| EcoRII | CCWGG | 1 cut(s) | 69 |
| EcoT22I | ATGCAT | 1 cut(s) | 555 |
| EgeI | GGCGCC | 1 cut(s) | 644 |
| EheI | GGCGCC | 1 cut(s) | 644 |
| FaeI | CATG | 2 cut(s) | 167, 485 |
| FatI | CATG | 2 cut(s) | 163, 481 |
| FauNDI | CATATG | 1 cut(s) | 437 |
| FbaI | TGATCA | 1 cut(s) | 736 |
| FblI | GTMKAC | 1 cut(s) | 354 |
| FokI | GGATG | 3 cut(s) | 418, 514, 672 |
| FspBI | CTAG | 6 cut(s) | 219, 447, 528, 597, 621, 783 |
| GlaI | GCGC | 1 cut(s) | 644 |
| GsuI | CTGGAG | 1 cut(s) | 564 |
| HaeII | RGCGCY | 1 cut(s) | 646 |
| HaeIII | GGCC | 1 cut(s) | 168 |
| HhaI | GCGC | 1 cut(s) | 645 |
| Hin1I | GRCGYC | 1 cut(s) | 643 |
| Hin1II | CATG | 2 cut(s) | 167, 485 |
| Hin6I | GCGC | 1 cut(s) | 643 |
| HinP1I | GCGC | 1 cut(s) | 643 |
| HincII | GTYRAC | 1 cut(s) | 673 |
| HindII | GTYRAC | 1 cut(s) | 673 |
| HindIII | AAGCTT | 1 cut(s) | 522 |
| HinfI | GANTC | 3 cut(s) | 39, 248, 562 |
| HpaI | GTTAAC | 1 cut(s) | 673 |
| HphI | GGTGA | 1 cut(s) | 676 |
| Hpy166II | GTNNAC | 3 cut(s) | 341, 355, 673 |
| Hpy188I | TCNGA | 3 cut(s) | 111, 181, 461 |
| Hpy188III | TCNNGA | 6 cut(s) | 219, 566, 629, 657, 730, 773 |
| Hpy8I | GTNNAC | 3 cut(s) | 341, 355, 673 |
| HpyAV | CCTTC | 3 cut(s) | 125, 661, 663 |
| HpyCH4III | ACNGT | 2 cut(s) | 9, 470 |
| HpyCH4IV | ACGT | 1 cut(s) | 379 |
| HpyCH4V | TGCA | 6 cut(s) | 145, 193, 237, 310, 485, 553 |
| HpyF3I | CTNAG | 1 cut(s) | 180 |
| HpySE526I | ACGT | 1 cut(s) | 379 |
| Hsp92I | GRCGYC | 1 cut(s) | 643 |
| Hsp92II | CATG | 2 cut(s) | 167, 485 |
| HspAI | GCGC | 1 cut(s) | 643 |
| KasI | GGCGCC | 1 cut(s) | 642 |
| Ksp22I | TGATCA | 1 cut(s) | 736 |
| KspAI | GTTAAC | 1 cut(s) | 673 |
| Kzo9I | GATC | 3 cut(s) | 111, 568, 736 |
| LmnI | GCTCC | 3 cut(s) | 281, 622, 755 |
| LpnPI | CCDG | 9 cut(s) | 56, 79, 83, 140, 349, 360, 528, 642, 715 |
| LweI | GCATC | 2 cut(s) | 154, 540 |
| MaeI | CTAG | 6 cut(s) | 219, 447, 528, 597, 621, 783 |
| MaeII | ACGT | 1 cut(s) | 379 |
| MaeIII | GTNAC | 1 cut(s) | 538 |
| MalI | GATC | 3 cut(s) | 113, 570, 738 |
| MboI | GATC | 3 cut(s) | 111, 568, 736 |
| MboII | GAAGA | 6 cut(s) | 34, 359, 563, 705, 756, 759 |
| MfeI | CAATTG | 2 cut(s) | 271, 358 |
| MhlI | GDGCHC | 2 cut(s) | 388, 619 |
| MluCI | AATT | 6 cut(s) | 271, 314, 320, 358, 442, 637 |
| Mly113I | GGCGCC | 1 cut(s) | 643 |
| MlyI | GAGTC | 1 cut(s) | 257 |
| MnlI | CCTC | 9 cut(s) | 56, 175, 192, 618, 625, 657, 660, 689, 704 |
| Mph1103I | ATGCAT | 1 cut(s) | 555 |
| MseI | TTAA | 3 cut(s) | 347, 636, 672 |
| MslI | CAYNNNNRTG | 1 cut(s) | 168 |
| MspR9I | CCNGG | 1 cut(s) | 71 |
| MunI | CAATTG | 2 cut(s) | 271, 358 |
| MvaI | CCWGG | 1 cut(s) | 71 |
| NarI | GGCGCC | 1 cut(s) | 643 |
| NdeI | CATATG | 1 cut(s) | 437 |
| NdeII | GATC | 3 cut(s) | 111, 568, 736 |
| NlaIII | CATG | 2 cut(s) | 167, 485 |
| NlaIV | GGNNCC | 2 cut(s) | 644, 757 |
| NsiI | ATGCAT | 1 cut(s) | 555 |
| PfeI | GAWTC | 2 cut(s) | 39, 562 |
| PleI | GAGTC | 1 cut(s) | 256 |
| PluTI | GGCGCC | 1 cut(s) | 646 |
| PpsI | GAGTC | 1 cut(s) | 256 |
| Psp6I | CCWGG | 1 cut(s) | 69 |
| PspGI | CCWGG | 1 cut(s) | 69 |
| PspN4I | GGNNCC | 2 cut(s) | 644, 757 |
| PstNI | CAGNNNCTG | 1 cut(s) | 124 |
| RsaI | GTAC | 1 cut(s) | 6 |
| RsaNI | GTAC | 1 cut(s) | 5 |
| RseI | CAYNNNNRTG | 1 cut(s) | 168 |
| SaqAI | TTAA | 3 cut(s) | 347, 636, 672 |
| Sau3AI | GATC | 3 cut(s) | 111, 568, 736 |
| SchI | GAGTC | 1 cut(s) | 257 |
| ScrFI | CCNGG | 1 cut(s) | 71 |
| SduI | GDGCHC | 2 cut(s) | 388, 619 |
| SfaNI | GCATC | 2 cut(s) | 154, 540 |
| SfoI | GGCGCC | 1 cut(s) | 644 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 168 |
| SmlI | CTYRAG | 1 cut(s) | 629 |
| SmoI | CTYRAG | 1 cut(s) | 629 |
| Sse9I | AATT | 6 cut(s) | 271, 314, 320, 358, 442, 637 |
| SspDI | GGCGCC | 1 cut(s) | 642 |
| SspMI | CTAG | 6 cut(s) | 219, 447, 528, 597, 621, 783 |
| StyD4I | CCNGG | 1 cut(s) | 69 |
| TaaI | ACNGT | 2 cut(s) | 9, 470 |
| TaiI | ACGT | 1 cut(s) | 382 |
| TaqI | TCGA | 2 cut(s) | 560, 574 |
| TasI | AATT | 6 cut(s) | 271, 314, 320, 358, 442, 637 |
| TfiI | GAWTC | 2 cut(s) | 39, 562 |
| Tru1I | TTAA | 3 cut(s) | 347, 636, 672 |
| Tru9I | TTAA | 3 cut(s) | 347, 636, 672 |
| TscAI | CASTG | 2 cut(s) | 14, 682 |
| TspDTI | ATGAA | 4 cut(s) | 143, 359, 424, 470 |
| TspRI | CASTG | 2 cut(s) | 14, 682 |
| XapI | RAATTY | 2 cut(s) | 314, 442 |
| XbaI | TCTAGA | 1 cut(s) | 218 |
| XmiI | GTMKAC | 1 cut(s) | 354 |
| XspI | CTAG | 6 cut(s) | 219, 447, 528, 597, 621, 783 |
| Zsp2I | ATGCAT | 1 cut(s) | 555 |