ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| p450 | PF00067 | 37 - 497 | 1.6e-94 | Cytochrome P450 |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 920 |
| AarI | CACCTGC | 1 cut(s) | 1138 |
| AatII | GACGTC | 1 cut(s) | 303 |
| Acc16I | TGCGCA | 1 cut(s) | 1518 |
| Acc36I | ACCTGC | 2 cut(s) | 255, 1138 |
| Acc65I | GGTACC | 1 cut(s) | 512 |
| AccB1I | GGYRCC | 1 cut(s) | 512 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 522 |
| AccII | CGCG | 1 cut(s) | 322 |
| AccIII | TCCGGA | 1 cut(s) | 462 |
| AciI | CCGC | 7 cut(s) | 272, 320, 519, 590, 620, 637, 1290 |
| AclWI | GGATC | 2 cut(s) | 875, 1232 |
| AcoI | YGGCCR | 1 cut(s) | 960 |
| AcsI | RAATTY | 3 cut(s) | 8, 458, 1265 |
| AcuI | CTGAAG | 3 cut(s) | 509, 695, 1323 |
| AcyI | GRCGYC | 2 cut(s) | 300, 406 |
| AfaI | GTAC | 4 cut(s) | 105, 514, 1191, 1300 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 137, 469, 522, 969, 1057 |
| AjnI | CCWGG | 1 cut(s) | 624 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1023, 1055 |
| Alw21I | GWGCWC | 2 cut(s) | 426, 1357 |
| Alw26I | GTCTC | 3 cut(s) | 262, 535, 1330 |
| AlwI | GGATC | 2 cut(s) | 875, 1232 |
| Ama87I | CYCGRG | 1 cut(s) | 1017 |
| Aor13HI | TCCGGA | 1 cut(s) | 462 |
| AoxI | GGCC | 3 cut(s) | 139, 211, 960 |
| ApeKI | GCWGC | 2 cut(s) | 439, 1204 |
| ApoI | RAATTY | 3 cut(s) | 8, 458, 1265 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 290, 322 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 9, 174 |
| Asp718I | GGTACC | 1 cut(s) | 512 |
| AspA2I | CCTAGG | 1 cut(s) | 1360 |
| AspLEI | GCGC | 2 cut(s) | 396, 1519 |
| AspS9I | GGNCC | 2 cut(s) | 212, 622 |
| AsuC2I | CCSGG | 2 cut(s) | 704, 940 |
| AsuHPI | GGTGA | 4 cut(s) | 170, 255, 395, 403 |
| AvaI | CYCGRG | 1 cut(s) | 1017 |
| AvaII | GGWCC | 1 cut(s) | 622 |
| AvrII | CCTAGG | 1 cut(s) | 1360 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 496, 529 |
| BanI | GGYRCC | 1 cut(s) | 512 |
| BanII | GRGCYC | 4 cut(s) | 376, 426, 1357, 1485 |
| BauI | CACGAG | 1 cut(s) | 1194 |
| Bbv12I | GWGCWC | 2 cut(s) | 426, 1357 |
| BbvI | GCAGC | 2 cut(s) | 451, 1216 |
| BccI | CCATC | 8 cut(s) | 150, 742, 760, 764, 802, 812, 1002, 1375 |
| BceAI | ACGGC | 3 cut(s) | 226, 947, 975 |
| BciT130I | CCWGG | 1 cut(s) | 626 |
| BclI | TGATCA | 2 cut(s) | 849, 1173 |
| BcnI | CCSGG | 2 cut(s) | 704, 940 |
| BcoDI | GTCTC | 3 cut(s) | 262, 535, 1330 |
| BfaI | CTAG | 2 cut(s) | 1082, 1361 |
| BfmI | CTRYAG | 1 cut(s) | 1091 |
| BfuAI | ACCTGC | 2 cut(s) | 255, 1138 |
| BisI | GCNGC | 2 cut(s) | 440, 1205 |
| BlnI | CCTAGG | 1 cut(s) | 1360 |
| BlpI | GCTNAGC | 2 cut(s) | 443, 1479 |
| BlsI | GCNGC | 2 cut(s) | 441, 1206 |
| BmcAI | AGTACT | 2 cut(s) | 105, 1300 |
| Bme1390I | CCNGG | 3 cut(s) | 626, 704, 940 |
| Bme18I | GGWCC | 1 cut(s) | 622 |
| BmeT110I | CYCGRG | 1 cut(s) | 1017 |
| BmgT120I | GGNCC | 2 cut(s) | 212, 622 |
| BmiI | GGNNCC | 4 cut(s) | 214, 375, 514, 1393 |
| BmrFI | CCNGG | 3 cut(s) | 626, 704, 940 |
| BmsI | GCATC | 3 cut(s) | 567, 962, 1504 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 413, 445 |
| BpmI | CTGGAG | 1 cut(s) | 1371 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 443, 1479 |
| BpuEI | CTTGAG | 1 cut(s) | 536 |
| BpuMI | CCSGG | 2 cut(s) | 704, 940 |
| BsaAI | YACGTR | 1 cut(s) | 935 |
| BsaHI | GRCGYC | 2 cut(s) | 300, 406 |
| BsaJI | CCNNGG | 4 cut(s) | 417, 963, 1161, 1360 |
| BsaWI | WCCGGW | 3 cut(s) | 180, 228, 462 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 137, 469, 522, 969, 1057 |
| BseAI | TCCGGA | 1 cut(s) | 462 |
| BseBI | CCWGG | 1 cut(s) | 626 |
| BseDI | CCNNGG | 4 cut(s) | 417, 963, 1161, 1360 |
| BseGI | GGATG | 7 cut(s) | 750, 775, 813, 994, 1066, 1157, 1386 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 137, 469, 522, 969, 1057 |
| BseMII | CTCAG | 5 cut(s) | 169, 457, 551, 876, 1470 |
| BseRI | GAGGAG | 2 cut(s) | 250, 485 |
| BseX3I | CGGCCG | 1 cut(s) | 960 |
| BseXI | GCAGC | 2 cut(s) | 451, 1216 |
| Bsh1236I | CGCG | 1 cut(s) | 322 |
| Bsh1285I | CGRYCG | 2 cut(s) | 276, 963 |
| BshFI | GGCC | 3 cut(s) | 141, 213, 962 |
| BshNI | GGYRCC | 1 cut(s) | 512 |
| BsiEI | CGRYCG | 2 cut(s) | 276, 963 |
| BsiHKAI | GWGCWC | 2 cut(s) | 426, 1357 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1017 |
| BsiSI | CCGG | 7 cut(s) | 181, 229, 333, 463, 704, 939, 1274 |
| BslFI | GGGAC | 1 cut(s) | 955 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 137, 469, 522, 969, 1057 |
| BsmAI | GTCTC | 3 cut(s) | 262, 535, 1330 |
| BsmBI | CGTCTC | 1 cut(s) | 1330 |
| BsmFI | GGGAC | 1 cut(s) | 955 |
| BsmI | GAATGC | 2 cut(s) | 287, 1227 |
| BsnI | GGCC | 3 cut(s) | 141, 213, 962 |
| BsoBI | CYCGRG | 1 cut(s) | 1017 |
| Bsp1286I | GDGCHC | 4 cut(s) | 376, 426, 1357, 1485 |
| Bsp13I | TCCGGA | 1 cut(s) | 462 |
| Bsp143I | GATC | 5 cut(s) | 789, 849, 880, 1173, 1237 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 443, 1479 |
| BspACI | CCGC | 7 cut(s) | 272, 320, 519, 590, 620, 637, 1290 |
| BspANI | GGCC | 3 cut(s) | 141, 213, 962 |
| BspCNI | CTCAG | 5 cut(s) | 168, 456, 552, 877, 1471 |
| BspEI | TCCGGA | 1 cut(s) | 462 |
| BspFNI | CGCG | 1 cut(s) | 322 |
| BspLI | GGNNCC | 4 cut(s) | 214, 375, 514, 1393 |
| BspMI | ACCTGC | 2 cut(s) | 255, 1138 |
| BspPI | GGATC | 2 cut(s) | 875, 1232 |
| BspQI | GCTCTTC | 1 cut(s) | 431 |
| BspT107I | GGYRCC | 1 cut(s) | 512 |
| BssECI | CCNNGG | 4 cut(s) | 417, 963, 1161, 1360 |
| BssMI | GATC | 5 cut(s) | 789, 849, 880, 1173, 1237 |
| BssNI | GRCGYC | 2 cut(s) | 300, 406 |
| BssSI | CACGAG | 1 cut(s) | 1194 |
| BssT1I | CCWWGG | 2 cut(s) | 417, 1360 |
| Bst2BI | CACGAG | 1 cut(s) | 1194 |
| Bst2UI | CCWGG | 1 cut(s) | 626 |
| Bst4CI | ACNGT | 2 cut(s) | 267, 317 |
| Bst6I | CTCTTC | 6 cut(s) | 180, 431, 590, 609, 734, 1428 |
| BstACI | GRCGYC | 2 cut(s) | 300, 406 |
| BstBAI | YACGTR | 1 cut(s) | 935 |
| BstC8I | GCNNGC | 3 cut(s) | 449, 1168, 1202 |
| BstDEI | CTNAG | 6 cut(s) | 155, 291, 443, 560, 885, 1479 |
| BstDSI | CCRYGG | 1 cut(s) | 963 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 135 |
| BstF5I | GGATG | 7 cut(s) | 750, 775, 813, 994, 1066, 1157, 1386 |
| BstFNI | CGCG | 1 cut(s) | 322 |
| BstHHI | GCGC | 2 cut(s) | 396, 1519 |
| BstKTI | GATC | 5 cut(s) | 792, 852, 883, 1176, 1240 |
| BstMAI | GTCTC | 3 cut(s) | 262, 535, 1330 |
| BstMBI | GATC | 5 cut(s) | 789, 849, 880, 1173, 1237 |
| BstMCI | CGRYCG | 2 cut(s) | 276, 963 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 448, 493, 868, 959, 1506 |
| BstNI | CCWGG | 1 cut(s) | 626 |
| BstNSI | RCATGY | 2 cut(s) | 451, 1170 |
| BstSCI | CCNGG | 3 cut(s) | 624, 702, 938 |
| BstSFI | CTRYAG | 1 cut(s) | 1091 |
| BstUI | CGCG | 1 cut(s) | 322 |
| BstV1I | GCAGC | 2 cut(s) | 451, 1216 |
| BstX2I | RGATCY | 2 cut(s) | 880, 1237 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1248 |
| BstYI | RGATCY | 2 cut(s) | 880, 1237 |
| BstZI | CGGCCG | 1 cut(s) | 960 |
| BsuRI | GGCC | 3 cut(s) | 141, 213, 962 |
| BtgI | CCRYGG | 1 cut(s) | 963 |
| BtsCI | GGATG | 7 cut(s) | 750, 775, 813, 994, 1066, 1157, 1386 |
| BtsIMutI | CAGTG | 1 cut(s) | 1183 |
| BveI | ACCTGC | 2 cut(s) | 255, 1138 |
| Cac8I | GCNNGC | 3 cut(s) | 449, 1168, 1202 |
| CfoI | GCGC | 2 cut(s) | 396, 1519 |
| Cfr13I | GGNCC | 2 cut(s) | 212, 622 |
| CseI | GACGC | 1 cut(s) | 414 |
| Csp6I | GTAC | 4 cut(s) | 104, 513, 1190, 1299 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 945, 980 |
| CviAII | CATG | 9 cut(s) | 448, 674, 907, 1167, 1171, 1187, 1444, 1468, 1511 |
| CviQI | GTAC | 4 cut(s) | 104, 513, 1190, 1299 |
| DdeI | CTNAG | 6 cut(s) | 155, 291, 443, 560, 885, 1479 |
| DpnI | GATC | 5 cut(s) | 791, 851, 882, 1175, 1239 |
| DpnII | GATC | 5 cut(s) | 789, 849, 880, 1173, 1237 |
| EaeI | YGGCCR | 1 cut(s) | 960 |
| EagI | CGGCCG | 1 cut(s) | 960 |
| Eam1104I | CTCTTC | 6 cut(s) | 180, 431, 590, 609, 734, 1428 |
| EarI | CTCTTC | 6 cut(s) | 180, 431, 590, 609, 734, 1428 |
| EciI | GGCGGA | 1 cut(s) | 635 |
| Ecl136II | GAGCTC | 2 cut(s) | 424, 1355 |
| EclXI | CGGCCG | 1 cut(s) | 960 |
| Eco130I | CCWWGG | 2 cut(s) | 417, 1360 |
| Eco24I | GRGCYC | 4 cut(s) | 376, 426, 1357, 1485 |
| Eco47I | GGWCC | 1 cut(s) | 622 |
| Eco52I | CGGCCG | 1 cut(s) | 960 |
| Eco53kI | GAGCTC | 2 cut(s) | 424, 1355 |
| Eco57I | CTGAAG | 3 cut(s) | 509, 695, 1323 |
| Eco88I | CYCGRG | 1 cut(s) | 1017 |
| EcoICRI | GAGCTC | 2 cut(s) | 424, 1355 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 135 |
| EcoRI | GAATTC | 1 cut(s) | 458 |
| EcoRII | CCWGG | 1 cut(s) | 624 |
| EcoT14I | CCWWGG | 2 cut(s) | 417, 1360 |
| EcoT22I | ATGCAT | 1 cut(s) | 1172 |
| EcoT38I | GRGCYC | 4 cut(s) | 376, 426, 1357, 1485 |
| ErhI | CCWWGG | 2 cut(s) | 417, 1360 |
| Esp3I | CGTCTC | 1 cut(s) | 1330 |
| FaeI | CATG | 9 cut(s) | 451, 677, 910, 1170, 1174, 1190, 1447, 1471, 1514 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 159, 191 |
| FaqI | GGGAC | 1 cut(s) | 955 |
| FatI | CATG | 9 cut(s) | 447, 673, 906, 1166, 1170, 1186, 1443, 1467, 1510 |
| FauI | CCCGC | 1 cut(s) | 583 |
| FbaI | TGATCA | 2 cut(s) | 849, 1173 |
| Fnu4HI | GCNGC | 2 cut(s) | 440, 1205 |
| FokI | GGATG | 7 cut(s) | 757, 782, 820, 981, 1073, 1144, 1393 |
| FriOI | GRGCYC | 4 cut(s) | 376, 426, 1357, 1485 |
| Fsp4HI | GCNGC | 2 cut(s) | 440, 1205 |
| FspBI | CTAG | 2 cut(s) | 1082, 1361 |
| FspI | TGCGCA | 1 cut(s) | 1518 |
| GlaI | GCGC | 2 cut(s) | 395, 1518 |
| GluI | GCNGC | 2 cut(s) | 440, 1205 |
| GsuI | CTGGAG | 1 cut(s) | 1371 |
| HaeIII | GGCC | 3 cut(s) | 141, 213, 962 |
| HapII | CCGG | 7 cut(s) | 181, 229, 333, 463, 704, 939, 1274 |
| HgaI | GACGC | 1 cut(s) | 414 |
| HhaI | GCGC | 2 cut(s) | 396, 1519 |
| Hin1I | GRCGYC | 2 cut(s) | 300, 406 |
| Hin1II | CATG | 9 cut(s) | 451, 677, 910, 1170, 1174, 1190, 1447, 1471, 1514 |
| Hin6I | GCGC | 2 cut(s) | 394, 1517 |
| HinP1I | GCGC | 2 cut(s) | 394, 1517 |
| HincII | GTYRAC | 1 cut(s) | 1216 |
| HindII | GTYRAC | 1 cut(s) | 1216 |
| HindIII | AAGCTT | 1 cut(s) | 784 |
| HinfI | GANTC | 9 cut(s) | 115, 549, 670, 947, 1109, 1154, 1255, 1318, 1399 |
| HpaII | CCGG | 7 cut(s) | 181, 229, 333, 463, 704, 939, 1274 |
| HphI | GGTGA | 4 cut(s) | 170, 255, 395, 403 |
| Hpy166II | GTNNAC | 2 cut(s) | 119, 1216 |
| Hpy188I | TCNGA | 2 cut(s) | 158, 1162 |
| Hpy188III | TCNNGA | 6 cut(s) | 463, 553, 574, 884, 1241, 1350 |
| Hpy8I | GTNNAC | 2 cut(s) | 119, 1216 |
| Hpy99I | CGWCG | 4 cut(s) | 302, 305, 408, 797 |
| HpyAV | CCTTC | 8 cut(s) | 132, 460, 484, 523, 649, 1298, 1445, 1495 |
| HpyCH4III | ACNGT | 2 cut(s) | 267, 317 |
| HpyCH4IV | ACGT | 4 cut(s) | 300, 570, 845, 934 |
| HpyCH4V | TGCA | 7 cut(s) | 60, 311, 580, 667, 871, 1170, 1500 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 448, 493, 868, 959, 1506 |
| HpyF3I | CTNAG | 6 cut(s) | 155, 291, 443, 560, 885, 1479 |
| HpySE526I | ACGT | 4 cut(s) | 300, 570, 845, 934 |
| Hsp92I | GRCGYC | 2 cut(s) | 300, 406 |
| Hsp92II | CATG | 9 cut(s) | 451, 677, 910, 1170, 1174, 1190, 1447, 1471, 1514 |
| HspAI | GCGC | 2 cut(s) | 394, 1517 |
| Kpn2I | TCCGGA | 1 cut(s) | 462 |
| KpnI | GGTACC | 1 cut(s) | 516 |
| Ksp22I | TGATCA | 2 cut(s) | 849, 1173 |
| Kzo9I | GATC | 5 cut(s) | 789, 849, 880, 1173, 1237 |
| LguI | GCTCTTC | 1 cut(s) | 431 |
| LmnI | GCTCC | 9 cut(s) | 379, 421, 493, 1138, 1224, 1276, 1352, 1360, 1391 |
| Lsp1109I | GCAGC | 2 cut(s) | 451, 1216 |
| LweI | GCATC | 3 cut(s) | 567, 962, 1504 |
| MaeI | CTAG | 2 cut(s) | 1082, 1361 |
| MaeII | ACGT | 4 cut(s) | 300, 570, 845, 934 |
| MaeIII | GTNAC | 2 cut(s) | 242, 978 |
| MalI | GATC | 5 cut(s) | 791, 851, 882, 1175, 1239 |
| MboI | GATC | 5 cut(s) | 789, 849, 880, 1173, 1237 |
| MflI | RGATCY | 2 cut(s) | 880, 1237 |
| MhlI | GDGCHC | 4 cut(s) | 376, 426, 1357, 1485 |
| MluCI | AATT | 6 cut(s) | 8, 346, 458, 659, 1265, 1293 |
| MlyI | GAGTC | 3 cut(s) | 124, 543, 1118 |
| MmeI | TCCRAC | 2 cut(s) | 1021, 1283 |
| Mph1103I | ATGCAT | 1 cut(s) | 1172 |
| MroI | TCCGGA | 1 cut(s) | 462 |
| MroXI | GAANNNNTTC | 2 cut(s) | 9, 174 |
| MseI | TTAA | 3 cut(s) | 501, 690, 1311 |
| MslI | CAYNNNNRTG | 1 cut(s) | 999 |
| MspA1I | CMGCKG | 2 cut(s) | 519, 1207 |
| MspI | CCGG | 7 cut(s) | 181, 229, 333, 463, 704, 939, 1274 |
| MspR9I | CCNGG | 3 cut(s) | 626, 704, 940 |
| Mva1269I | GAATGC | 2 cut(s) | 287, 1227 |
| MvaI | CCWGG | 1 cut(s) | 626 |
| MvnI | CGCG | 1 cut(s) | 322 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 448, 493, 868, 959, 1506 |
| NciI | CCSGG | 2 cut(s) | 704, 940 |
| NdeII | GATC | 5 cut(s) | 789, 849, 880, 1173, 1237 |
| NlaIII | CATG | 9 cut(s) | 451, 677, 910, 1170, 1174, 1190, 1447, 1471, 1514 |
| NlaIV | GGNNCC | 4 cut(s) | 214, 375, 514, 1393 |
| NmuCI | GTSAC | 1 cut(s) | 978 |
| NsbI | TGCGCA | 1 cut(s) | 1518 |
| NsiI | ATGCAT | 1 cut(s) | 1172 |
| NspI | RCATGY | 2 cut(s) | 451, 1170 |
| PaeI | GCATGC | 2 cut(s) | 451, 1170 |
| PaeR7I | CTCGAG | 1 cut(s) | 1017 |
| PaqCI | CACCTGC | 1 cut(s) | 1138 |
| PciSI | GCTCTTC | 1 cut(s) | 431 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1158 |
| PctI | GAATGC | 2 cut(s) | 287, 1227 |
| PdmI | GAANNNNTTC | 2 cut(s) | 9, 174 |
| PfeI | GAWTC | 6 cut(s) | 670, 947, 1154, 1255, 1318, 1399 |
| PflFI | GACNNNGTC | 2 cut(s) | 302, 976 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 522 |
| PkrI | GCNGC | 2 cut(s) | 441, 1206 |
| PleI | GAGTC | 3 cut(s) | 123, 543, 1117 |
| PpsI | GAGTC | 3 cut(s) | 123, 543, 1117 |
| Ppu21I | YACGTR | 1 cut(s) | 935 |
| PsiI | TTATAA | 1 cut(s) | 920 |
| Psp124BI | GAGCTC | 2 cut(s) | 426, 1357 |
| Psp6I | CCWGG | 1 cut(s) | 624 |
| PspGI | CCWGG | 1 cut(s) | 624 |
| PspN4I | GGNNCC | 4 cut(s) | 214, 375, 514, 1393 |
| PspPI | GGNCC | 2 cut(s) | 212, 622 |
| PspXI | VCTCGAGB | 1 cut(s) | 1017 |
| PsuI | RGATCY | 2 cut(s) | 880, 1237 |
| PsyI | GACNNNGTC | 2 cut(s) | 302, 976 |
| PvuII | CAGCTG | 1 cut(s) | 1207 |
| RsaI | GTAC | 4 cut(s) | 105, 514, 1191, 1300 |
| RsaNI | GTAC | 4 cut(s) | 104, 513, 1190, 1299 |
| RseI | CAYNNNNRTG | 1 cut(s) | 999 |
| SacI | GAGCTC | 2 cut(s) | 426, 1357 |
| SapI | GCTCTTC | 1 cut(s) | 431 |
| SaqAI | TTAA | 3 cut(s) | 501, 690, 1311 |
| SatI | GCNGC | 2 cut(s) | 440, 1205 |
| Sau3AI | GATC | 5 cut(s) | 789, 849, 880, 1173, 1237 |
| Sau96I | GGNCC | 2 cut(s) | 212, 622 |
| ScaI | AGTACT | 2 cut(s) | 105, 1300 |
| SchI | GAGTC | 3 cut(s) | 124, 543, 1118 |
| ScrFI | CCNGG | 3 cut(s) | 626, 704, 940 |
| SduI | GDGCHC | 4 cut(s) | 376, 426, 1357, 1485 |
| SfaNI | GCATC | 3 cut(s) | 567, 962, 1504 |
| SfcI | CTRYAG | 1 cut(s) | 1091 |
| Sfr274I | CTCGAG | 1 cut(s) | 1017 |
| SinI | GGWCC | 1 cut(s) | 622 |
| SlaI | CTCGAG | 1 cut(s) | 1017 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 999 |
| SmlI | CTYRAG | 2 cut(s) | 551, 1017 |
| SmoI | CTYRAG | 2 cut(s) | 551, 1017 |
| SphI | GCATGC | 2 cut(s) | 451, 1170 |
| Sse9I | AATT | 6 cut(s) | 8, 346, 458, 659, 1265, 1293 |
| SsiI | CCGC | 7 cut(s) | 272, 320, 519, 590, 620, 637, 1290 |
| SspMI | CTAG | 2 cut(s) | 1082, 1361 |
| SstI | GAGCTC | 2 cut(s) | 426, 1357 |
| StyD4I | CCNGG | 3 cut(s) | 624, 702, 938 |
| StyI | CCWWGG | 2 cut(s) | 417, 1360 |
| TaaI | ACNGT | 2 cut(s) | 267, 317 |
| TaiI | ACGT | 4 cut(s) | 303, 573, 848, 937 |
| TaqI | TCGA | 4 cut(s) | 276, 792, 1018, 1029 |
| TaqII | GACCGA | 1 cut(s) | 1065 |
| TasI | AATT | 6 cut(s) | 8, 346, 458, 659, 1265, 1293 |
| TatI | WGTACW | 2 cut(s) | 103, 1298 |
| TfiI | GAWTC | 6 cut(s) | 670, 947, 1154, 1255, 1318, 1399 |
| Tru1I | TTAA | 3 cut(s) | 501, 690, 1311 |
| Tru9I | TTAA | 3 cut(s) | 501, 690, 1311 |
| TscAI | CASTG | 1 cut(s) | 1183 |
| TseFI | GTSAC | 1 cut(s) | 978 |
| TseI | GCWGC | 2 cut(s) | 439, 1204 |
| Tsp45I | GTSAC | 1 cut(s) | 978 |
| TspDTI | ATGAA | 9 cut(s) | 34, 55, 662, 668, 773, 923, 1017, 1077, 1220 |
| TspGWI | ACGGA | 1 cut(s) | 1121 |
| TspRI | CASTG | 1 cut(s) | 1183 |
| Tth111I | GACNNNGTC | 2 cut(s) | 302, 976 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 522 |
| VpaK11BI | GGWCC | 1 cut(s) | 622 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 135 |
| XapI | RAATTY | 3 cut(s) | 8, 458, 1265 |
| XceI | RCATGY | 2 cut(s) | 451, 1170 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1193 |
| XhoI | CTCGAG | 1 cut(s) | 1017 |
| XmaJI | CCTAGG | 1 cut(s) | 1360 |
| XmnI | GAANNNNTTC | 2 cut(s) | 9, 174 |
| XspI | CTAG | 2 cut(s) | 1082, 1361 |
| ZraI | GACGTC | 1 cut(s) | 301 |
| ZrmI | AGTACT | 2 cut(s) | 105, 1300 |
| Zsp2I | ATGCAT | 1 cut(s) | 1172 |