ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 304 |
| AccB1I | GGYRCC | 1 cut(s) | 231 |
| AccII | CGCG | 1 cut(s) | 217 |
| AciI | CCGC | 3 cut(s) | 215, 217, 345 |
| AcsI | RAATTY | 1 cut(s) | 63 |
| AgsI | TTSAA | 1 cut(s) | 262 |
| AjnI | CCWGG | 1 cut(s) | 289 |
| AluBI | AGCT | 5 cut(s) | 17, 28, 72, 189, 302 |
| AluI | AGCT | 5 cut(s) | 17, 28, 72, 189, 302 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 296 |
| ApeKI | GCWGC | 2 cut(s) | 98, 299 |
| ApoI | RAATTY | 1 cut(s) | 63 |
| AspLEI | GCGC | 2 cut(s) | 48, 214 |
| AspS9I | GGNCC | 1 cut(s) | 293 |
| AsuII | TTCGAA | 1 cut(s) | 122 |
| AvaII | GGWCC | 1 cut(s) | 293 |
| BanI | GGYRCC | 1 cut(s) | 231 |
| BbvI | GCAGC | 2 cut(s) | 85, 311 |
| BccI | CCATC | 2 cut(s) | 263, 354 |
| BciT130I | CCWGG | 1 cut(s) | 291 |
| BfaI | CTAG | 2 cut(s) | 113, 186 |
| BfmI | CTRYAG | 1 cut(s) | 297 |
| BfoI | RGCGCY | 2 cut(s) | 49, 215 |
| BfuAI | ACCTGC | 1 cut(s) | 304 |
| BisI | GCNGC | 3 cut(s) | 99, 215, 300 |
| BlsI | GCNGC | 3 cut(s) | 100, 216, 301 |
| Bme1390I | CCNGG | 1 cut(s) | 291 |
| Bme18I | GGWCC | 1 cut(s) | 293 |
| BmgT120I | GGNCC | 1 cut(s) | 293 |
| BmiI | GGNNCC | 1 cut(s) | 233 |
| BmrFI | CCNGG | 1 cut(s) | 291 |
| BoxI | GACNNNNGTC | 1 cut(s) | 173 |
| Bpu14I | TTCGAA | 1 cut(s) | 122 |
| BpuEI | CTTGAG | 1 cut(s) | 62 |
| BsaJI | CCNNGG | 3 cut(s) | 215, 248, 328 |
| BseBI | CCWGG | 1 cut(s) | 291 |
| BseDI | CCNNGG | 3 cut(s) | 215, 248, 328 |
| BseGI | GGATG | 1 cut(s) | 365 |
| BseMII | CTCAG | 1 cut(s) | 155 |
| BseXI | GCAGC | 2 cut(s) | 85, 311 |
| Bsh1236I | CGCG | 1 cut(s) | 217 |
| BshNI | GGYRCC | 1 cut(s) | 231 |
| BslFI | GGGAC | 1 cut(s) | 378 |
| BsmFI | GGGAC | 1 cut(s) | 378 |
| Bsp119I | TTCGAA | 1 cut(s) | 122 |
| Bsp19I | CCATGG | 1 cut(s) | 328 |
| BspACI | CCGC | 3 cut(s) | 215, 217, 345 |
| BspCNI | CTCAG | 1 cut(s) | 154 |
| BspFNI | CGCG | 1 cut(s) | 217 |
| BspLI | GGNNCC | 1 cut(s) | 233 |
| BspMAI | CTGCAG | 1 cut(s) | 301 |
| BspMI | ACCTGC | 1 cut(s) | 304 |
| BspT104I | TTCGAA | 1 cut(s) | 122 |
| BspT107I | GGYRCC | 1 cut(s) | 231 |
| BssECI | CCNNGG | 3 cut(s) | 215, 248, 328 |
| BssT1I | CCWWGG | 2 cut(s) | 248, 328 |
| Bst2UI | CCWGG | 1 cut(s) | 291 |
| Bst4CI | ACNGT | 1 cut(s) | 353 |
| BstBI | TTCGAA | 1 cut(s) | 122 |
| BstC8I | GCNNGC | 1 cut(s) | 19 |
| BstDEI | CTNAG | 2 cut(s) | 29, 141 |
| BstDSI | CCRYGG | 2 cut(s) | 215, 328 |
| BstF5I | GGATG | 1 cut(s) | 365 |
| BstFNI | CGCG | 1 cut(s) | 217 |
| BstH2I | RGCGCY | 2 cut(s) | 49, 215 |
| BstHHI | GCGC | 2 cut(s) | 48, 214 |
| BstNI | CCWGG | 1 cut(s) | 291 |
| BstNSI | RCATGY | 1 cut(s) | 112 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 173 |
| BstSCI | CCNGG | 1 cut(s) | 289 |
| BstSFI | CTRYAG | 1 cut(s) | 297 |
| BstUI | CGCG | 1 cut(s) | 217 |
| BstV1I | GCAGC | 2 cut(s) | 85, 311 |
| BtgI | CCRYGG | 2 cut(s) | 215, 328 |
| BtsCI | GGATG | 1 cut(s) | 365 |
| BveI | ACCTGC | 1 cut(s) | 304 |
| Cac8I | GCNNGC | 1 cut(s) | 19 |
| CaiI | CAGNNNCTG | 1 cut(s) | 296 |
| CfoI | GCGC | 2 cut(s) | 48, 214 |
| Cfr13I | GGNCC | 1 cut(s) | 293 |
| Cfr42I | CCGCGG | 1 cut(s) | 218 |
| CviAII | CATG | 3 cut(s) | 58, 109, 329 |
| CviJI | RGCY | 8 cut(s) | 5, 17, 28, 72, 83, 88, 189, 302 |
| CviKI_1 | RGCY | 8 cut(s) | 5, 17, 28, 72, 83, 88, 189, 302 |
| DdeI | CTNAG | 2 cut(s) | 29, 141 |
| Eco130I | CCWWGG | 2 cut(s) | 248, 328 |
| Eco47I | GGWCC | 1 cut(s) | 293 |
| EcoO109I | RGGNCCY | 1 cut(s) | 293 |
| EcoRII | CCWGG | 1 cut(s) | 289 |
| EcoT14I | CCWWGG | 2 cut(s) | 248, 328 |
| ErhI | CCWWGG | 2 cut(s) | 248, 328 |
| FaeI | CATG | 3 cut(s) | 61, 112, 332 |
| FaiI | YATR | 5 cut(s) | 8, 10, 59, 110, 330 |
| FaqI | GGGAC | 1 cut(s) | 378 |
| FatI | CATG | 3 cut(s) | 57, 108, 328 |
| Fnu4HI | GCNGC | 3 cut(s) | 99, 215, 300 |
| FokI | GGATG | 1 cut(s) | 372 |
| Fsp4HI | GCNGC | 3 cut(s) | 99, 215, 300 |
| FspBI | CTAG | 2 cut(s) | 113, 186 |
| GlaI | GCGC | 2 cut(s) | 47, 213 |
| GluI | GCNGC | 3 cut(s) | 99, 215, 300 |
| HaeII | RGCGCY | 2 cut(s) | 49, 215 |
| HhaI | GCGC | 2 cut(s) | 48, 214 |
| Hin1II | CATG | 3 cut(s) | 61, 112, 332 |
| Hin6I | GCGC | 2 cut(s) | 46, 212 |
| HinP1I | GCGC | 2 cut(s) | 46, 212 |
| HincII | GTYRAC | 1 cut(s) | 136 |
| HindII | GTYRAC | 1 cut(s) | 136 |
| HindIII | AAGCTT | 1 cut(s) | 26 |
| Hpy166II | GTNNAC | 1 cut(s) | 136 |
| Hpy188I | TCNGA | 1 cut(s) | 168 |
| Hpy188III | TCNNGA | 1 cut(s) | 320 |
| Hpy8I | GTNNAC | 1 cut(s) | 136 |
| HpyAV | CCTTC | 1 cut(s) | 60 |
| HpyCH4III | ACNGT | 1 cut(s) | 353 |
| HpyCH4V | TGCA | 2 cut(s) | 278, 299 |
| HpyF3I | CTNAG | 2 cut(s) | 29, 141 |
| Hsp92II | CATG | 3 cut(s) | 61, 112, 332 |
| HspAI | GCGC | 2 cut(s) | 46, 212 |
| KspI | CCGCGG | 1 cut(s) | 218 |
| LmnI | GCTCC | 1 cut(s) | 106 |
| LpnPI | CCDG | 3 cut(s) | 276, 303, 309 |
| Lsp1109I | GCAGC | 2 cut(s) | 85, 311 |
| MaeI | CTAG | 2 cut(s) | 113, 186 |
| MaeIII | GTNAC | 2 cut(s) | 320, 347 |
| MluCI | AATT | 2 cut(s) | 63, 240 |
| MnlI | CCTC | 3 cut(s) | 31, 65, 246 |
| MseI | TTAA | 1 cut(s) | 255 |
| MspA1I | CMGCKG | 1 cut(s) | 217 |
| MspR9I | CCNGG | 1 cut(s) | 291 |
| MvaI | CCWGG | 1 cut(s) | 291 |
| MvnI | CGCG | 1 cut(s) | 217 |
| NcoI | CCATGG | 1 cut(s) | 328 |
| NlaIII | CATG | 3 cut(s) | 61, 112, 332 |
| NlaIV | GGNNCC | 1 cut(s) | 233 |
| NmuCI | GTSAC | 1 cut(s) | 320 |
| NspI | RCATGY | 1 cut(s) | 112 |
| NspV | TTCGAA | 1 cut(s) | 122 |
| PfoI | TCCNGGA | 1 cut(s) | 289 |
| PkrI | GCNGC | 3 cut(s) | 100, 216, 301 |
| PpuMI | RGGWCCY | 1 cut(s) | 293 |
| PshAI | GACNNNNGTC | 1 cut(s) | 173 |
| Psp5II | RGGWCCY | 1 cut(s) | 293 |
| Psp6I | CCWGG | 1 cut(s) | 289 |
| PspGI | CCWGG | 1 cut(s) | 289 |
| PspN4I | GGNNCC | 1 cut(s) | 233 |
| PspPI | GGNCC | 1 cut(s) | 293 |
| PspPPI | RGGWCCY | 1 cut(s) | 293 |
| PstI | CTGCAG | 1 cut(s) | 301 |
| PstNI | CAGNNNCTG | 1 cut(s) | 296 |
| SacII | CCGCGG | 1 cut(s) | 218 |
| SaqAI | TTAA | 1 cut(s) | 255 |
| SatI | GCNGC | 3 cut(s) | 99, 215, 300 |
| Sau96I | GGNCC | 1 cut(s) | 293 |
| ScrFI | CCNGG | 1 cut(s) | 291 |
| SetI | ASST | 8 cut(s) | 19, 30, 74, 118, 191, 298, 304, 380 |
| SfcI | CTRYAG | 1 cut(s) | 297 |
| Sfr303I | CCGCGG | 1 cut(s) | 218 |
| SfuI | TTCGAA | 1 cut(s) | 122 |
| SgrBI | CCGCGG | 1 cut(s) | 218 |
| SinI | GGWCC | 1 cut(s) | 293 |
| SmlI | CTYRAG | 1 cut(s) | 77 |
| SmoI | CTYRAG | 1 cut(s) | 77 |
| Sse9I | AATT | 2 cut(s) | 63, 240 |
| SsiI | CCGC | 3 cut(s) | 215, 217, 345 |
| SspMI | CTAG | 2 cut(s) | 113, 186 |
| StyD4I | CCNGG | 1 cut(s) | 289 |
| StyI | CCWWGG | 2 cut(s) | 248, 328 |
| TaaI | ACNGT | 1 cut(s) | 353 |
| TaqI | TCGA | 2 cut(s) | 122, 205 |
| TasI | AATT | 2 cut(s) | 63, 240 |
| TauI | GCSGC | 1 cut(s) | 217 |
| Tru1I | TTAA | 1 cut(s) | 255 |
| Tru9I | TTAA | 1 cut(s) | 255 |
| TseFI | GTSAC | 1 cut(s) | 320 |
| TseI | GCWGC | 2 cut(s) | 98, 299 |
| Tsp45I | GTSAC | 1 cut(s) | 320 |
| VpaK11BI | GGWCC | 1 cut(s) | 293 |
| XapI | RAATTY | 1 cut(s) | 63 |
| XceI | RCATGY | 1 cut(s) | 112 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 246 |
| XspI | CTAG | 2 cut(s) | 113, 186 |