Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 1 - 76 | 1.1e-11 | Reverse transcriptase-like |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 109 |
| AciI | CCGC | 1 cut(s) | 5 |
| AluBI | AGCT | 3 cut(s) | 17, 221, 330 |
| AluI | AGCT | 3 cut(s) | 17, 221, 330 |
| Alw26I | GTCTC | 1 cut(s) | 291 |
| Ama87I | CYCGRG | 1 cut(s) | 294 |
| AsuHPI | GGTGA | 1 cut(s) | 242 |
| AvaI | CYCGRG | 1 cut(s) | 294 |
| BaeGI | GKGCMC | 1 cut(s) | 295 |
| BanI | GGYRCC | 1 cut(s) | 109 |
| BbsI | GAAGAC | 2 cut(s) | 137, 302 |
| BcoDI | GTCTC | 1 cut(s) | 291 |
| BfaI | CTAG | 2 cut(s) | 59, 331 |
| BmeT110I | CYCGRG | 1 cut(s) | 294 |
| BmiI | GGNNCC | 1 cut(s) | 111 |
| BmsI | GCATC | 2 cut(s) | 202, 223 |
| BpiI | GAAGAC | 2 cut(s) | 137, 302 |
| BsaI | GGTCTC | 1 cut(s) | 291 |
| BsaJI | CCNNGG | 1 cut(s) | 113 |
| Bse1I | ACTGG | 1 cut(s) | 47 |
| BseDI | CCNNGG | 1 cut(s) | 113 |
| BseMII | CTCAG | 1 cut(s) | 234 |
| BseNI | ACTGG | 1 cut(s) | 47 |
| BseRI | GAGGAG | 1 cut(s) | 90 |
| BseSI | GKGCMC | 1 cut(s) | 295 |
| BshNI | GGYRCC | 1 cut(s) | 109 |
| BsiHKCI | CYCGRG | 1 cut(s) | 294 |
| BslFI | GGGAC | 1 cut(s) | 53 |
| BsmAI | GTCTC | 1 cut(s) | 291 |
| BsmFI | GGGAC | 1 cut(s) | 53 |
| Bso31I | GGTCTC | 1 cut(s) | 291 |
| BsoBI | CYCGRG | 1 cut(s) | 294 |
| Bsp1286I | GDGCHC | 1 cut(s) | 295 |
| BspACI | CCGC | 1 cut(s) | 5 |
| BspCNI | CTCAG | 1 cut(s) | 235 |
| BspLI | GGNNCC | 1 cut(s) | 111 |
| BspT107I | GGYRCC | 1 cut(s) | 109 |
| BspTNI | GGTCTC | 1 cut(s) | 291 |
| BsrI | ACTGG | 1 cut(s) | 47 |
| BssECI | CCNNGG | 1 cut(s) | 113 |
| BssT1I | CCWWGG | 1 cut(s) | 113 |
| Bst4CI | ACNGT | 2 cut(s) | 143, 302 |
| BstDEI | CTNAG | 1 cut(s) | 243 |
| BstMAI | GTCTC | 1 cut(s) | 291 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 55 |
| BstNSI | RCATGY | 1 cut(s) | 53 |
| BstSLI | GKGCMC | 1 cut(s) | 295 |
| BstV2I | GAAGAC | 2 cut(s) | 137, 302 |
| CviAII | CATG | 1 cut(s) | 50 |
| CviJI | RGCY | 5 cut(s) | 17, 29, 58, 221, 330 |
| CviKI_1 | RGCY | 5 cut(s) | 17, 29, 58, 221, 330 |
| DdeI | CTNAG | 1 cut(s) | 243 |
| Eco130I | CCWWGG | 1 cut(s) | 113 |
| Eco31I | GGTCTC | 1 cut(s) | 291 |
| Eco88I | CYCGRG | 1 cut(s) | 294 |
| EcoT14I | CCWWGG | 1 cut(s) | 113 |
| ErhI | CCWWGG | 1 cut(s) | 113 |
| FaeI | CATG | 1 cut(s) | 53 |
| FaiI | YATR | 6 cut(s) | 51, 105, 107, 162, 164, 189 |
| FaqI | GGGAC | 1 cut(s) | 53 |
| FatI | CATG | 1 cut(s) | 49 |
| FauNDI | CATATG | 2 cut(s) | 105, 162 |
| FspBI | CTAG | 2 cut(s) | 59, 331 |
| Hin1II | CATG | 1 cut(s) | 53 |
| HinfI | GANTC | 2 cut(s) | 68, 260 |
| HphI | GGTGA | 1 cut(s) | 242 |
| Hpy188I | TCNGA | 1 cut(s) | 244 |
| HpyAV | CCTTC | 1 cut(s) | 101 |
| HpyCH4III | ACNGT | 2 cut(s) | 143, 302 |
| HpyCH4V | TGCA | 2 cut(s) | 166, 278 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 55 |
| HpyF3I | CTNAG | 1 cut(s) | 243 |
| Hsp92II | CATG | 1 cut(s) | 53 |
| LpnPI | CCDG | 1 cut(s) | 28 |
| LweI | GCATC | 2 cut(s) | 202, 223 |
| MaeI | CTAG | 2 cut(s) | 59, 331 |
| MaeIII | GTNAC | 1 cut(s) | 137 |
| MboII | GAAGA | 3 cut(s) | 137, 168, 302 |
| MhlI | GDGCHC | 1 cut(s) | 295 |
| MluCI | AATT | 3 cut(s) | 223, 272, 316 |
| MnlI | CCTC | 3 cut(s) | 111, 187, 279 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 55 |
| NdeI | CATATG | 2 cut(s) | 105, 162 |
| NlaIII | CATG | 1 cut(s) | 53 |
| NlaIV | GGNNCC | 1 cut(s) | 111 |
| NspI | RCATGY | 1 cut(s) | 53 |
| PfeI | GAWTC | 2 cut(s) | 68, 260 |
| PspN4I | GGNNCC | 1 cut(s) | 111 |
| SduI | GDGCHC | 1 cut(s) | 295 |
| SetI | ASST | 4 cut(s) | 19, 223, 310, 332 |
| SfaNI | GCATC | 2 cut(s) | 202, 223 |
| Sse9I | AATT | 3 cut(s) | 223, 272, 316 |
| SsiI | CCGC | 1 cut(s) | 5 |
| SspMI | CTAG | 2 cut(s) | 59, 331 |
| StyI | CCWWGG | 1 cut(s) | 113 |
| TaaI | ACNGT | 2 cut(s) | 143, 302 |
| TaqI | TCGA | 1 cut(s) | 124 |
| TasI | AATT | 3 cut(s) | 223, 272, 316 |
| TfiI | GAWTC | 2 cut(s) | 68, 260 |
| TspDTI | ATGAA | 2 cut(s) | 60, 137 |
| XceI | RCATGY | 1 cut(s) | 53 |
| XspI | CTAG | 2 cut(s) | 59, 331 |