Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-RVT | PF13966 | 161 - 200 | 4.2e-08 | zinc-binding in reverse transcriptase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 123 |
| AccI | GTMKAC | 1 cut(s) | 56 |
| AciI | CCGC | 2 cut(s) | 65, 502 |
| AcsI | RAATTY | 3 cut(s) | 378, 819, 927 |
| AfaI | GTAC | 2 cut(s) | 688, 958 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 640 |
| AgsI | TTSAA | 6 cut(s) | 28, 246, 319, 478, 783, 965 |
| AluBI | AGCT | 6 cut(s) | 17, 277, 358, 394, 421, 874 |
| AluI | AGCT | 6 cut(s) | 17, 277, 358, 394, 421, 874 |
| Alw21I | GWGCWC | 3 cut(s) | 530, 581, 892 |
| Ama87I | CYCGRG | 1 cut(s) | 913 |
| ApeKI | GCWGC | 4 cut(s) | 68, 362, 499, 989 |
| ApoI | RAATTY | 3 cut(s) | 378, 819, 927 |
| AsuHPI | GGTGA | 1 cut(s) | 551 |
| AvaI | CYCGRG | 1 cut(s) | 913 |
| Bbv12I | GWGCWC | 3 cut(s) | 530, 581, 892 |
| BbvI | GCAGC | 4 cut(s) | 55, 349, 511, 976 |
| BccI | CCATC | 3 cut(s) | 712, 815, 977 |
| BceAI | ACGGC | 1 cut(s) | 94 |
| BfaI | CTAG | 3 cut(s) | 750, 954, 1004 |
| BfmI | CTRYAG | 1 cut(s) | 462 |
| BisI | GCNGC | 5 cut(s) | 66, 69, 363, 500, 990 |
| BlpI | GCTNAGC | 1 cut(s) | 354 |
| BlsI | GCNGC | 5 cut(s) | 67, 70, 364, 501, 991 |
| BmcAI | AGTACT | 1 cut(s) | 958 |
| BmeT110I | CYCGRG | 1 cut(s) | 913 |
| BmsI | GCATC | 3 cut(s) | 527, 551, 736 |
| Bpu10I | CCTNAGC | 1 cut(s) | 100 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 354 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 640 |
| BseGI | GGATG | 1 cut(s) | 751 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 640 |
| BseMII | CTCAG | 2 cut(s) | 114, 345 |
| BseXI | GCAGC | 4 cut(s) | 55, 349, 511, 976 |
| BsgI | GTGCAG | 2 cut(s) | 348, 518 |
| BsiHKAI | GWGCWC | 3 cut(s) | 530, 581, 892 |
| BsiHKCI | CYCGRG | 1 cut(s) | 913 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 640 |
| BsmI | GAATGC | 1 cut(s) | 71 |
| BsoBI | CYCGRG | 1 cut(s) | 913 |
| Bsp1286I | GDGCHC | 3 cut(s) | 530, 581, 892 |
| Bsp143I | GATC | 1 cut(s) | 917 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 354 |
| BspACI | CCGC | 2 cut(s) | 65, 502 |
| BspCNI | CTCAG | 2 cut(s) | 113, 346 |
| BssMI | GATC | 1 cut(s) | 917 |
| Bst4CI | ACNGT | 1 cut(s) | 227 |
| BstC8I | GCNNGC | 4 cut(s) | 360, 727, 948, 1015 |
| BstDEI | CTNAG | 2 cut(s) | 100, 354 |
| BstF5I | GGATG | 1 cut(s) | 751 |
| BstKTI | GATC | 1 cut(s) | 920 |
| BstMBI | GATC | 1 cut(s) | 917 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 359 |
| BstNSI | RCATGY | 2 cut(s) | 653, 950 |
| BstSFI | CTRYAG | 1 cut(s) | 462 |
| BstV1I | GCAGC | 4 cut(s) | 55, 349, 511, 976 |
| BtsCI | GGATG | 1 cut(s) | 751 |
| BtsI | GCAGTG | 1 cut(s) | 668 |
| BtsIMutI | CAGTG | 2 cut(s) | 668, 892 |
| Cac8I | GCNNGC | 4 cut(s) | 360, 727, 948, 1015 |
| CseI | GACGC | 1 cut(s) | 764 |
| Csp6I | GTAC | 2 cut(s) | 687, 957 |
| CviAII | CATG | 6 cut(s) | 327, 539, 650, 677, 947, 995 |
| CviQI | GTAC | 2 cut(s) | 687, 957 |
| DdeI | CTNAG | 2 cut(s) | 100, 354 |
| DpnI | GATC | 1 cut(s) | 919 |
| DpnII | GATC | 1 cut(s) | 917 |
| Eco88I | CYCGRG | 1 cut(s) | 913 |
| EcoT22I | ATGCAT | 2 cut(s) | 544, 858 |
| FaeI | CATG | 6 cut(s) | 330, 542, 653, 680, 950, 998 |
| FatI | CATG | 6 cut(s) | 326, 538, 649, 676, 946, 994 |
| FauI | CCCGC | 1 cut(s) | 495 |
| FblI | GTMKAC | 1 cut(s) | 56 |
| Fnu4HI | GCNGC | 5 cut(s) | 66, 69, 363, 500, 990 |
| FokI | GGATG | 1 cut(s) | 758 |
| Fsp4HI | GCNGC | 5 cut(s) | 66, 69, 363, 500, 990 |
| FspBI | CTAG | 3 cut(s) | 750, 954, 1004 |
| GluI | GCNGC | 5 cut(s) | 66, 69, 363, 500, 990 |
| HgaI | GACGC | 1 cut(s) | 764 |
| Hin1II | CATG | 6 cut(s) | 330, 542, 653, 680, 950, 998 |
| HincII | GTYRAC | 1 cut(s) | 628 |
| HindII | GTYRAC | 1 cut(s) | 628 |
| HindIII | AAGCTT | 2 cut(s) | 15, 419 |
| HinfI | GANTC | 4 cut(s) | 434, 799, 833, 897 |
| HpaI | GTTAAC | 1 cut(s) | 628 |
| HphI | GGTGA | 1 cut(s) | 551 |
| Hpy166II | GTNNAC | 3 cut(s) | 57, 162, 628 |
| Hpy188I | TCNGA | 5 cut(s) | 307, 376, 442, 643, 1034 |
| Hpy188III | TCNNGA | 6 cut(s) | 25, 478, 770, 824, 915, 932 |
| Hpy8I | GTNNAC | 3 cut(s) | 57, 162, 628 |
| Hpy99I | CGWCG | 1 cut(s) | 780 |
| HpyAV | CCTTC | 1 cut(s) | 408 |
| HpyCH4III | ACNGT | 1 cut(s) | 227 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 359 |
| HpyF3I | CTNAG | 2 cut(s) | 100, 354 |
| Hsp92II | CATG | 6 cut(s) | 330, 542, 653, 680, 950, 998 |
| KspAI | GTTAAC | 1 cut(s) | 628 |
| Kzo9I | GATC | 1 cut(s) | 917 |
| LmnI | GCTCC | 2 cut(s) | 871, 955 |
| LpnPI | CCDG | 4 cut(s) | 87, 711, 773, 999 |
| Lsp1109I | GCAGC | 4 cut(s) | 55, 349, 511, 976 |
| LweI | GCATC | 3 cut(s) | 527, 551, 736 |
| MaeI | CTAG | 3 cut(s) | 750, 954, 1004 |
| MaeIII | GTNAC | 3 cut(s) | 203, 557, 813 |
| MalI | GATC | 1 cut(s) | 919 |
| MboI | GATC | 1 cut(s) | 917 |
| MboII | GAAGA | 2 cut(s) | 40, 649 |
| MfeI | CAATTG | 2 cut(s) | 210, 692 |
| MhlI | GDGCHC | 3 cut(s) | 530, 581, 892 |
| MluCI | AATT | 9 cut(s) | 210, 229, 246, 257, 378, 692, 819, 859, 927 |
| MlyI | GAGTC | 1 cut(s) | 428 |
| MmeI | TCCRAC | 1 cut(s) | 411 |
| MnlI | CCTC | 4 cut(s) | 32, 436, 585, 922 |
| Mph1103I | ATGCAT | 2 cut(s) | 544, 858 |
| MseI | TTAA | 4 cut(s) | 9, 47, 627, 975 |
| MslI | CAYNNNNRTG | 3 cut(s) | 136, 523, 945 |
| MspA1I | CMGCKG | 1 cut(s) | 502 |
| MunI | CAATTG | 2 cut(s) | 210, 692 |
| Mva1269I | GAATGC | 1 cut(s) | 71 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 359 |
| NdeII | GATC | 1 cut(s) | 917 |
| NlaIII | CATG | 6 cut(s) | 330, 542, 653, 680, 950, 998 |
| NmuCI | GTSAC | 2 cut(s) | 203, 557 |
| NsiI | ATGCAT | 2 cut(s) | 544, 858 |
| NspI | RCATGY | 2 cut(s) | 653, 950 |
| PaeI | GCATGC | 1 cut(s) | 950 |
| PaeR7I | CTCGAG | 1 cut(s) | 913 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 775 |
| PctI | GAATGC | 1 cut(s) | 71 |
| PfeI | GAWTC | 3 cut(s) | 799, 833, 897 |
| PkrI | GCNGC | 5 cut(s) | 67, 70, 364, 501, 991 |
| PleI | GAGTC | 1 cut(s) | 428 |
| PpsI | GAGTC | 1 cut(s) | 428 |
| PsiI | TTATAA | 1 cut(s) | 123 |
| RsaI | GTAC | 2 cut(s) | 688, 958 |
| RsaNI | GTAC | 2 cut(s) | 687, 957 |
| RseI | CAYNNNNRTG | 3 cut(s) | 136, 523, 945 |
| SaqAI | TTAA | 4 cut(s) | 9, 47, 627, 975 |
| SatI | GCNGC | 5 cut(s) | 66, 69, 363, 500, 990 |
| Sau3AI | GATC | 1 cut(s) | 917 |
| ScaI | AGTACT | 1 cut(s) | 958 |
| SchI | GAGTC | 1 cut(s) | 428 |
| SduI | GDGCHC | 3 cut(s) | 530, 581, 892 |
| SfaNI | GCATC | 3 cut(s) | 527, 551, 736 |
| SfcI | CTRYAG | 1 cut(s) | 462 |
| Sfr274I | CTCGAG | 1 cut(s) | 913 |
| SlaI | CTCGAG | 1 cut(s) | 913 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 136, 523, 945 |
| SmlI | CTYRAG | 1 cut(s) | 913 |
| SmoI | CTYRAG | 1 cut(s) | 913 |
| SphI | GCATGC | 1 cut(s) | 950 |
| Sse9I | AATT | 9 cut(s) | 210, 229, 246, 257, 378, 692, 819, 859, 927 |
| SsiI | CCGC | 2 cut(s) | 65, 502 |
| SspMI | CTAG | 3 cut(s) | 750, 954, 1004 |
| TaaI | ACNGT | 1 cut(s) | 227 |
| TaqI | TCGA | 2 cut(s) | 823, 914 |
| TasI | AATT | 9 cut(s) | 210, 229, 246, 257, 378, 692, 819, 859, 927 |
| TatI | WGTACW | 1 cut(s) | 956 |
| TauI | GCSGC | 1 cut(s) | 68 |
| TfiI | GAWTC | 3 cut(s) | 799, 833, 897 |
| Tru1I | TTAA | 4 cut(s) | 9, 47, 627, 975 |
| Tru9I | TTAA | 4 cut(s) | 9, 47, 627, 975 |
| TscAI | CASTG | 2 cut(s) | 675, 892 |
| TseFI | GTSAC | 2 cut(s) | 203, 557 |
| TseI | GCWGC | 4 cut(s) | 68, 362, 499, 989 |
| Tsp45I | GTSAC | 2 cut(s) | 203, 557 |
| TspDTI | ATGAA | 1 cut(s) | 301 |
| TspRI | CASTG | 2 cut(s) | 675, 892 |
| XapI | RAATTY | 3 cut(s) | 378, 819, 927 |
| XceI | RCATGY | 2 cut(s) | 653, 950 |
| XhoI | CTCGAG | 1 cut(s) | 913 |
| XmiI | GTMKAC | 1 cut(s) | 56 |
| XspI | CTAG | 3 cut(s) | 750, 954, 1004 |
| ZrmI | AGTACT | 1 cut(s) | 958 |
| Zsp2I | ATGCAT | 2 cut(s) | 544, 858 |