ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 397 |
| AcuI | CTGAAG | 1 cut(s) | 192 |
| AfaI | GTAC | 2 cut(s) | 118, 477 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 184 |
| AjnI | CCWGG | 2 cut(s) | 5, 400 |
| AluBI | AGCT | 4 cut(s) | 47, 83, 155, 437 |
| AluI | AGCT | 4 cut(s) | 47, 83, 155, 437 |
| Alw21I | GWGCWC | 2 cut(s) | 85, 400 |
| AlwI | GGATC | 1 cut(s) | 397 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 407 |
| Ama87I | CYCGRG | 1 cut(s) | 84 |
| AoxI | GGCC | 2 cut(s) | 8, 404 |
| ApeKI | GCWGC | 1 cut(s) | 152 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 118 |
| AspS9I | GGNCC | 1 cut(s) | 404 |
| AvaI | CYCGRG | 1 cut(s) | 84 |
| BanII | GRGCYC | 1 cut(s) | 85 |
| BbsI | GAAGAC | 1 cut(s) | 24 |
| Bbv12I | GWGCWC | 2 cut(s) | 85, 400 |
| BbvI | GCAGC | 1 cut(s) | 164 |
| BccI | CCATC | 7 cut(s) | 104, 176, 182, 310, 380, 404, 491 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 449, 483 |
| BciT130I | CCWGG | 2 cut(s) | 7, 402 |
| BfaI | CTAG | 1 cut(s) | 393 |
| BfmI | CTRYAG | 1 cut(s) | 539 |
| BisI | GCNGC | 1 cut(s) | 153 |
| BlsI | GCNGC | 1 cut(s) | 154 |
| BmcAI | AGTACT | 1 cut(s) | 118 |
| Bme1390I | CCNGG | 2 cut(s) | 7, 402 |
| BmeT110I | CYCGRG | 1 cut(s) | 84 |
| BmgT120I | GGNCC | 1 cut(s) | 404 |
| BmiI | GGNNCC | 1 cut(s) | 457 |
| BmrFI | CCNGG | 2 cut(s) | 7, 402 |
| BmsI | GCATC | 1 cut(s) | 45 |
| BpiI | GAAGAC | 1 cut(s) | 24 |
| BpmI | CTGGAG | 1 cut(s) | 384 |
| Bpu10I | CCTNAGC | 1 cut(s) | 156 |
| BpuEI | CTTGAG | 1 cut(s) | 35 |
| BsaJI | CCNNGG | 3 cut(s) | 5, 141, 401 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 184 |
| Bse3DI | GCAATG | 1 cut(s) | 213 |
| BseBI | CCWGG | 2 cut(s) | 7, 402 |
| BseDI | CCNNGG | 3 cut(s) | 5, 141, 401 |
| BseGI | GGATG | 4 cut(s) | 115, 174, 391, 483 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 184 |
| BseMI | GCAATG | 1 cut(s) | 213 |
| BseXI | GCAGC | 1 cut(s) | 164 |
| BsgI | GTGCAG | 1 cut(s) | 171 |
| BshFI | GGCC | 2 cut(s) | 10, 406 |
| BsiHKAI | GWGCWC | 2 cut(s) | 85, 400 |
| BsiHKCI | CYCGRG | 1 cut(s) | 84 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 184 |
| BsnI | GGCC | 2 cut(s) | 10, 406 |
| BsoBI | CYCGRG | 1 cut(s) | 84 |
| Bsp1286I | GDGCHC | 2 cut(s) | 85, 400 |
| Bsp143I | GATC | 2 cut(s) | 280, 389 |
| BspANI | GGCC | 2 cut(s) | 10, 406 |
| BspLI | GGNNCC | 1 cut(s) | 457 |
| BspMAI | CTGCAG | 1 cut(s) | 543 |
| BspPI | GGATC | 1 cut(s) | 397 |
| BsrDI | GCAATG | 1 cut(s) | 213 |
| BssECI | CCNNGG | 3 cut(s) | 5, 141, 401 |
| BssMI | GATC | 2 cut(s) | 280, 389 |
| BssT1I | CCWWGG | 1 cut(s) | 141 |
| Bst2UI | CCWGG | 2 cut(s) | 7, 402 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 224 |
| BstDEI | CTNAG | 1 cut(s) | 156 |
| BstF5I | GGATG | 4 cut(s) | 115, 174, 391, 483 |
| BstKTI | GATC | 2 cut(s) | 283, 392 |
| BstMBI | GATC | 2 cut(s) | 280, 389 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 158, 224 |
| BstNI | CCWGG | 2 cut(s) | 7, 402 |
| BstNSI | RCATGY | 2 cut(s) | 227, 474 |
| BstSCI | CCNGG | 2 cut(s) | 5, 400 |
| BstSFI | CTRYAG | 1 cut(s) | 539 |
| BstV1I | GCAGC | 1 cut(s) | 164 |
| BstV2I | GAAGAC | 1 cut(s) | 24 |
| BstX2I | RGATCY | 1 cut(s) | 389 |
| BstYI | RGATCY | 1 cut(s) | 389 |
| BsuRI | GGCC | 2 cut(s) | 10, 406 |
| BtsCI | GGATG | 4 cut(s) | 115, 174, 391, 483 |
| BtsI | GCAGTG | 1 cut(s) | 305 |
| BtsIMutI | CAGTG | 1 cut(s) | 305 |
| CaiI | CAGNNNCTG | 1 cut(s) | 407 |
| Cfr13I | GGNCC | 1 cut(s) | 404 |
| Csp6I | GTAC | 2 cut(s) | 117, 476 |
| CviAII | CATG | 3 cut(s) | 179, 224, 471 |
| CviQI | GTAC | 2 cut(s) | 117, 476 |
| DdeI | CTNAG | 1 cut(s) | 156 |
| DpnI | GATC | 2 cut(s) | 282, 391 |
| DpnII | GATC | 2 cut(s) | 280, 389 |
| Ecl136II | GAGCTC | 1 cut(s) | 83 |
| Eco130I | CCWWGG | 1 cut(s) | 141 |
| Eco147I | AGGCCT | 1 cut(s) | 10 |
| Eco24I | GRGCYC | 1 cut(s) | 85 |
| Eco53kI | GAGCTC | 1 cut(s) | 83 |
| Eco57I | CTGAAG | 1 cut(s) | 192 |
| Eco88I | CYCGRG | 1 cut(s) | 84 |
| EcoICRI | GAGCTC | 1 cut(s) | 83 |
| EcoO109I | RGGNCCY | 1 cut(s) | 404 |
| EcoRII | CCWGG | 2 cut(s) | 5, 400 |
| EcoT14I | CCWWGG | 1 cut(s) | 141 |
| EcoT38I | GRGCYC | 1 cut(s) | 85 |
| ErhI | CCWWGG | 1 cut(s) | 141 |
| FaeI | CATG | 3 cut(s) | 182, 227, 474 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 106, 138 |
| FatI | CATG | 3 cut(s) | 178, 223, 470 |
| FauNDI | CATATG | 1 cut(s) | 563 |
| Fnu4HI | GCNGC | 1 cut(s) | 153 |
| FokI | GGATG | 4 cut(s) | 122, 161, 398, 470 |
| FriOI | GRGCYC | 1 cut(s) | 85 |
| Fsp4HI | GCNGC | 1 cut(s) | 153 |
| FspBI | CTAG | 1 cut(s) | 393 |
| GluI | GCNGC | 1 cut(s) | 153 |
| GsuI | CTGGAG | 1 cut(s) | 384 |
| HaeIII | GGCC | 2 cut(s) | 10, 406 |
| Hin1II | CATG | 3 cut(s) | 182, 227, 474 |
| HincII | GTYRAC | 1 cut(s) | 534 |
| HindII | GTYRAC | 1 cut(s) | 534 |
| HindIII | AAGCTT | 1 cut(s) | 435 |
| HinfI | GANTC | 2 cut(s) | 244, 535 |
| Hpy166II | GTNNAC | 3 cut(s) | 99, 476, 534 |
| Hpy188I | TCNGA | 3 cut(s) | 211, 243, 460 |
| Hpy188III | TCNNGA | 1 cut(s) | 52 |
| Hpy8I | GTNNAC | 3 cut(s) | 99, 476, 534 |
| HpyAV | CCTTC | 2 cut(s) | 216, 276 |
| HpyCH4V | TGCA | 7 cut(s) | 23, 58, 152, 218, 470, 527, 541 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 158, 224 |
| HpyF3I | CTNAG | 1 cut(s) | 156 |
| Hsp92II | CATG | 3 cut(s) | 182, 227, 474 |
| Kzo9I | GATC | 2 cut(s) | 280, 389 |
| LmnI | GCTCC | 1 cut(s) | 403 |
| LpnPI | CCDG | 7 cut(s) | 19, 269, 387, 405, 414, 420, 492 |
| Lsp1109I | GCAGC | 1 cut(s) | 164 |
| LweI | GCATC | 1 cut(s) | 45 |
| MaeI | CTAG | 1 cut(s) | 393 |
| MaeIII | GTNAC | 1 cut(s) | 192 |
| MalI | GATC | 2 cut(s) | 282, 391 |
| MboI | GATC | 2 cut(s) | 280, 389 |
| MboII | GAAGA | 3 cut(s) | 24, 118, 332 |
| MflI | RGATCY | 1 cut(s) | 389 |
| MhlI | GDGCHC | 2 cut(s) | 85, 400 |
| MluCI | AATT | 3 cut(s) | 342, 360, 555 |
| MlyI | GAGTC | 1 cut(s) | 529 |
| MnlI | CCTC | 2 cut(s) | 271, 349 |
| MroXI | GAANNNNTTC | 1 cut(s) | 118 |
| MseI | TTAA | 1 cut(s) | 90 |
| MslI | CAYNNNNRTG | 1 cut(s) | 135 |
| MspR9I | CCNGG | 2 cut(s) | 7, 402 |
| MvaI | CCWGG | 2 cut(s) | 7, 402 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 158, 224 |
| NdeI | CATATG | 1 cut(s) | 563 |
| NdeII | GATC | 2 cut(s) | 280, 389 |
| NlaIII | CATG | 3 cut(s) | 182, 227, 474 |
| NlaIV | GGNNCC | 1 cut(s) | 457 |
| NspI | RCATGY | 2 cut(s) | 227, 474 |
| PceI | AGGCCT | 1 cut(s) | 10 |
| PdmI | GAANNNNTTC | 1 cut(s) | 118 |
| PfeI | GAWTC | 1 cut(s) | 244 |
| PkrI | GCNGC | 1 cut(s) | 154 |
| PleI | GAGTC | 1 cut(s) | 529 |
| PpsI | GAGTC | 1 cut(s) | 529 |
| Psp124BI | GAGCTC | 1 cut(s) | 85 |
| Psp6I | CCWGG | 2 cut(s) | 5, 400 |
| PspGI | CCWGG | 2 cut(s) | 5, 400 |
| PspN4I | GGNNCC | 1 cut(s) | 457 |
| PspPI | GGNCC | 1 cut(s) | 404 |
| PstI | CTGCAG | 1 cut(s) | 543 |
| PstNI | CAGNNNCTG | 1 cut(s) | 407 |
| PsuI | RGATCY | 1 cut(s) | 389 |
| RsaI | GTAC | 2 cut(s) | 118, 477 |
| RsaNI | GTAC | 2 cut(s) | 117, 476 |
| RseI | CAYNNNNRTG | 1 cut(s) | 135 |
| SacI | GAGCTC | 1 cut(s) | 85 |
| SaqAI | TTAA | 1 cut(s) | 90 |
| SatI | GCNGC | 1 cut(s) | 153 |
| Sau3AI | GATC | 2 cut(s) | 280, 389 |
| Sau96I | GGNCC | 1 cut(s) | 404 |
| ScaI | AGTACT | 1 cut(s) | 118 |
| SchI | GAGTC | 1 cut(s) | 529 |
| ScrFI | CCNGG | 2 cut(s) | 7, 402 |
| SduI | GDGCHC | 2 cut(s) | 85, 400 |
| SetI | ASST | 7 cut(s) | 49, 85, 147, 157, 194, 288, 439 |
| SfaNI | GCATC | 1 cut(s) | 45 |
| SfcI | CTRYAG | 1 cut(s) | 539 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 135 |
| SmlI | CTYRAG | 1 cut(s) | 50 |
| SmoI | CTYRAG | 1 cut(s) | 50 |
| Sse9I | AATT | 3 cut(s) | 342, 360, 555 |
| SseBI | AGGCCT | 1 cut(s) | 10 |
| SspMI | CTAG | 1 cut(s) | 393 |
| SstI | GAGCTC | 1 cut(s) | 85 |
| StuI | AGGCCT | 1 cut(s) | 10 |
| StyD4I | CCNGG | 2 cut(s) | 5, 400 |
| StyI | CCWWGG | 1 cut(s) | 141 |
| TasI | AATT | 3 cut(s) | 342, 360, 555 |
| TatI | WGTACW | 1 cut(s) | 116 |
| TfiI | GAWTC | 1 cut(s) | 244 |
| Tru1I | TTAA | 1 cut(s) | 90 |
| Tru9I | TTAA | 1 cut(s) | 90 |
| TscAI | CASTG | 1 cut(s) | 312 |
| TseI | GCWGC | 1 cut(s) | 152 |
| TspDTI | ATGAA | 1 cut(s) | 333 |
| TspRI | CASTG | 1 cut(s) | 312 |
| XceI | RCATGY | 2 cut(s) | 227, 474 |
| XmnI | GAANNNNTTC | 1 cut(s) | 118 |
| XspI | CTAG | 1 cut(s) | 393 |
| ZrmI | AGTACT | 1 cut(s) | 118 |