ATPase family associated with various cellular activities (AAA)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PALP | PF00291 | 48 - 387 | 1.1e-66 | Pyridoxal-phosphate dependent enzyme |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 4 |
| AciI | CCGC | 3 cut(s) | 540, 755, 1236 |
| AclWI | GGATC | 1 cut(s) | 495 |
| AcsI | RAATTY | 4 cut(s) | 201, 973, 1184, 1211 |
| AcuI | CTGAAG | 3 cut(s) | 924, 963, 1065 |
| AcyI | GRCGYC | 2 cut(s) | 5, 186 |
| AfaI | GTAC | 3 cut(s) | 703, 775, 887 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 128, 371, 851 |
| AgsI | TTSAA | 6 cut(s) | 226, 272, 434, 474, 668, 1031 |
| AjnI | CCWGG | 7 cut(s) | 229, 301, 640, 844, 1037, 1129, 1248 |
| AluBI | AGCT | 5 cut(s) | 35, 299, 991, 1025, 1085 |
| AluI | AGCT | 5 cut(s) | 35, 299, 991, 1025, 1085 |
| Alw26I | GTCTC | 3 cut(s) | 285, 426, 1165 |
| AlwI | GGATC | 1 cut(s) | 495 |
| AoxI | GGCC | 5 cut(s) | 54, 99, 130, 464, 707 |
| ApeKI | GCWGC | 3 cut(s) | 35, 407, 758 |
| ApoI | RAATTY | 4 cut(s) | 201, 973, 1184, 1211 |
| AspA2I | CCTAGG | 1 cut(s) | 439 |
| AspLEI | GCGC | 2 cut(s) | 7, 26 |
| AspS9I | GGNCC | 2 cut(s) | 707, 1127 |
| AsuC2I | CCSGG | 1 cut(s) | 686 |
| AsuHPI | GGTGA | 1 cut(s) | 1138 |
| AvaII | GGWCC | 1 cut(s) | 1127 |
| AvrII | CCTAGG | 1 cut(s) | 439 |
| BaeGI | GKGCMC | 1 cut(s) | 691 |
| BanI | GGYRCC | 1 cut(s) | 4 |
| BanII | GRGCYC | 1 cut(s) | 1065 |
| BbsI | GAAGAC | 1 cut(s) | 95 |
| BbvI | GCAGC | 3 cut(s) | 22, 394, 770 |
| BccI | CCATC | 3 cut(s) | 976, 989, 1052 |
| BceAI | ACGGC | 1 cut(s) | 354 |
| BciT130I | CCWGG | 7 cut(s) | 231, 303, 642, 846, 1039, 1131, 1250 |
| BciVI | GTATCC | 1 cut(s) | 641 |
| BclI | TGATCA | 1 cut(s) | 658 |
| BcnI | CCSGG | 1 cut(s) | 686 |
| BcoDI | GTCTC | 3 cut(s) | 285, 426, 1165 |
| BfaI | CTAG | 3 cut(s) | 296, 440, 507 |
| BfmI | CTRYAG | 3 cut(s) | 66, 354, 800 |
| BfoI | RGCGCY | 2 cut(s) | 8, 27 |
| BfuI | GTATCC | 1 cut(s) | 641 |
| BisI | GCNGC | 5 cut(s) | 36, 408, 540, 756, 759 |
| BlnI | CCTAGG | 1 cut(s) | 439 |
| BlsI | GCNGC | 5 cut(s) | 37, 409, 541, 757, 760 |
| Bme1390I | CCNGG | 8 cut(s) | 231, 303, 642, 686, 846, 1039, 1131, 1250 |
| Bme18I | GGWCC | 1 cut(s) | 1127 |
| BmgT120I | GGNCC | 2 cut(s) | 707, 1127 |
| BmiI | GGNNCC | 3 cut(s) | 6, 142, 445 |
| BmrFI | CCNGG | 8 cut(s) | 231, 303, 642, 686, 846, 1039, 1131, 1250 |
| BmrI | ACTGGG | 1 cut(s) | 714 |
| BmsI | GCATC | 3 cut(s) | 177, 527, 733 |
| BmuI | ACTGGG | 1 cut(s) | 714 |
| BpiI | GAAGAC | 1 cut(s) | 95 |
| BpmI | CTGGAG | 4 cut(s) | 285, 309, 750, 1119 |
| BpuEI | CTTGAG | 1 cut(s) | 602 |
| BpuMI | CCSGG | 1 cut(s) | 686 |
| BsaHI | GRCGYC | 2 cut(s) | 5, 186 |
| BsaI | GGTCTC | 1 cut(s) | 285 |
| BsaJI | CCNNGG | 6 cut(s) | 51, 229, 439, 629, 1006, 1249 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 225, 255, 346, 376, 435, 465, 723, 753 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 128, 371, 851 |
| Bse118I | RCCGGY | 1 cut(s) | 97 |
| Bse1I | ACTGG | 4 cut(s) | 196, 467, 709, 733 |
| Bse3DI | GCAATG | 1 cut(s) | 501 |
| BseBI | CCWGG | 7 cut(s) | 231, 303, 642, 846, 1039, 1131, 1250 |
| BseDI | CCNNGG | 6 cut(s) | 51, 229, 439, 629, 1006, 1249 |
| BseGI | GGATG | 1 cut(s) | 1173 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 128, 371, 851 |
| BseMI | GCAATG | 1 cut(s) | 501 |
| BseMII | CTCAG | 6 cut(s) | 57, 309, 437, 702, 1169, 1188 |
| BseNI | ACTGG | 4 cut(s) | 196, 467, 709, 733 |
| BseRI | GAGGAG | 1 cut(s) | 911 |
| BseSI | GKGCMC | 1 cut(s) | 691 |
| BseXI | GCAGC | 3 cut(s) | 22, 394, 770 |
| BshFI | GGCC | 5 cut(s) | 56, 101, 132, 466, 709 |
| BshNI | GGYRCC | 1 cut(s) | 4 |
| BsiSI | CCGG | 2 cut(s) | 98, 685 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 128, 371, 851 |
| BsmAI | GTCTC | 3 cut(s) | 285, 426, 1165 |
| BsnI | GGCC | 5 cut(s) | 56, 101, 132, 466, 709 |
| Bso31I | GGTCTC | 1 cut(s) | 285 |
| Bsp1286I | GDGCHC | 2 cut(s) | 691, 1065 |
| Bsp1407I | TGTACA | 1 cut(s) | 885 |
| Bsp143I | GATC | 2 cut(s) | 487, 658 |
| Bsp19I | CCATGG | 1 cut(s) | 51 |
| BspACI | CCGC | 3 cut(s) | 540, 755, 1236 |
| BspANI | GGCC | 5 cut(s) | 56, 101, 132, 466, 709 |
| BspCNI | CTCAG | 6 cut(s) | 56, 310, 436, 703, 1170, 1189 |
| BspLI | GGNNCC | 3 cut(s) | 6, 142, 445 |
| BspPI | GGATC | 1 cut(s) | 495 |
| BspQI | GCTCTTC | 1 cut(s) | 1070 |
| BspT107I | GGYRCC | 1 cut(s) | 4 |
| BspTNI | GGTCTC | 1 cut(s) | 285 |
| BsrDI | GCAATG | 1 cut(s) | 501 |
| BsrFI | RCCGGY | 1 cut(s) | 97 |
| BsrGI | TGTACA | 1 cut(s) | 885 |
| BsrI | ACTGG | 4 cut(s) | 196, 467, 709, 733 |
| BssAI | RCCGGY | 1 cut(s) | 97 |
| BssECI | CCNNGG | 6 cut(s) | 51, 229, 439, 629, 1006, 1249 |
| BssMI | GATC | 2 cut(s) | 487, 658 |
| BssNI | GRCGYC | 2 cut(s) | 5, 186 |
| BssT1I | CCWWGG | 3 cut(s) | 51, 439, 629 |
| Bst2UI | CCWGG | 7 cut(s) | 231, 303, 642, 846, 1039, 1131, 1250 |
| Bst4CI | ACNGT | 5 cut(s) | 358, 451, 621, 778, 1119 |
| Bst6I | CTCTTC | 3 cut(s) | 267, 606, 1070 |
| BstACI | GRCGYC | 2 cut(s) | 5, 186 |
| BstAUI | TGTACA | 1 cut(s) | 885 |
| BstC8I | GCNNGC | 1 cut(s) | 1234 |
| BstDEI | CTNAG | 6 cut(s) | 43, 318, 423, 711, 1178, 1197 |
| BstDSI | CCRYGG | 1 cut(s) | 51 |
| BstF5I | GGATG | 1 cut(s) | 1173 |
| BstH2I | RGCGCY | 2 cut(s) | 8, 27 |
| BstHHI | GCGC | 2 cut(s) | 7, 26 |
| BstKTI | GATC | 2 cut(s) | 490, 661 |
| BstMAI | GTCTC | 3 cut(s) | 285, 426, 1165 |
| BstMBI | GATC | 2 cut(s) | 487, 658 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 32, 174, 359, 443, 524, 752 |
| BstNI | CCWGG | 7 cut(s) | 231, 303, 642, 846, 1039, 1131, 1250 |
| BstSCI | CCNGG | 8 cut(s) | 229, 301, 640, 684, 844, 1037, 1129, 1248 |
| BstSFI | CTRYAG | 3 cut(s) | 66, 354, 800 |
| BstSLI | GKGCMC | 1 cut(s) | 691 |
| BstV1I | GCAGC | 3 cut(s) | 22, 394, 770 |
| BstV2I | GAAGAC | 1 cut(s) | 95 |
| BsuI | GTATCC | 1 cut(s) | 641 |
| BsuRI | GGCC | 5 cut(s) | 56, 101, 132, 466, 709 |
| BtgI | CCRYGG | 1 cut(s) | 51 |
| BtsCI | GGATG | 1 cut(s) | 1173 |
| BtsI | GCAGTG | 1 cut(s) | 1227 |
| BtsIMutI | CAGTG | 5 cut(s) | 51, 189, 315, 447, 1227 |
| Cac8I | GCNNGC | 1 cut(s) | 1234 |
| CfoI | GCGC | 2 cut(s) | 7, 26 |
| Cfr10I | RCCGGY | 1 cut(s) | 97 |
| Cfr13I | GGNCC | 2 cut(s) | 707, 1127 |
| CseI | GACGC | 2 cut(s) | 194, 413 |
| Csp6I | GTAC | 3 cut(s) | 702, 774, 886 |
| CviAII | CATG | 2 cut(s) | 52, 386 |
| CviQI | GTAC | 3 cut(s) | 702, 774, 886 |
| DdeI | CTNAG | 6 cut(s) | 43, 318, 423, 711, 1178, 1197 |
| DinI | GGCGCC | 1 cut(s) | 6 |
| DpnI | GATC | 2 cut(s) | 489, 660 |
| DpnII | GATC | 2 cut(s) | 487, 658 |
| Eam1104I | CTCTTC | 3 cut(s) | 267, 606, 1070 |
| EarI | CTCTTC | 3 cut(s) | 267, 606, 1070 |
| Eco130I | CCWWGG | 3 cut(s) | 51, 439, 629 |
| Eco24I | GRGCYC | 1 cut(s) | 1065 |
| Eco31I | GGTCTC | 1 cut(s) | 285 |
| Eco47I | GGWCC | 1 cut(s) | 1127 |
| Eco57I | CTGAAG | 3 cut(s) | 924, 963, 1065 |
| EcoRII | CCWGG | 7 cut(s) | 229, 301, 640, 844, 1037, 1129, 1248 |
| EcoT14I | CCWWGG | 3 cut(s) | 51, 439, 629 |
| EcoT22I | ATGCAT | 1 cut(s) | 748 |
| EcoT38I | GRGCYC | 1 cut(s) | 1065 |
| EgeI | GGCGCC | 1 cut(s) | 6 |
| EheI | GGCGCC | 1 cut(s) | 6 |
| ErhI | CCWWGG | 3 cut(s) | 51, 439, 629 |
| FaeI | CATG | 2 cut(s) | 55, 389 |
| FatI | CATG | 2 cut(s) | 51, 385 |
| FbaI | TGATCA | 1 cut(s) | 658 |
| Fnu4HI | GCNGC | 5 cut(s) | 36, 408, 540, 756, 759 |
| FokI | GGATG | 1 cut(s) | 1180 |
| FriOI | GRGCYC | 1 cut(s) | 1065 |
| Fsp4HI | GCNGC | 5 cut(s) | 36, 408, 540, 756, 759 |
| FspBI | CTAG | 3 cut(s) | 296, 440, 507 |
| GlaI | GCGC | 2 cut(s) | 6, 25 |
| GluI | GCNGC | 5 cut(s) | 36, 408, 540, 756, 759 |
| GsuI | CTGGAG | 4 cut(s) | 285, 309, 750, 1119 |
| HaeII | RGCGCY | 2 cut(s) | 8, 27 |
| HaeIII | GGCC | 5 cut(s) | 56, 101, 132, 466, 709 |
| HapII | CCGG | 2 cut(s) | 98, 685 |
| HgaI | GACGC | 2 cut(s) | 194, 413 |
| HhaI | GCGC | 2 cut(s) | 7, 26 |
| Hin1I | GRCGYC | 2 cut(s) | 5, 186 |
| Hin1II | CATG | 2 cut(s) | 55, 389 |
| Hin6I | GCGC | 2 cut(s) | 5, 24 |
| HinP1I | GCGC | 2 cut(s) | 5, 24 |
| HincII | GTYRAC | 1 cut(s) | 499 |
| HindII | GTYRAC | 1 cut(s) | 499 |
| HindIII | AAGCTT | 1 cut(s) | 989 |
| HinfI | GANTC | 4 cut(s) | 284, 811, 922, 954 |
| HpaII | CCGG | 2 cut(s) | 98, 685 |
| HphI | GGTGA | 1 cut(s) | 1138 |
| Hpy166II | GTNNAC | 2 cut(s) | 499, 888 |
| Hpy188I | TCNGA | 7 cut(s) | 184, 426, 523, 981, 1007, 1047, 1179 |
| Hpy188III | TCNNGA | 3 cut(s) | 223, 288, 832 |
| Hpy8I | GTNNAC | 2 cut(s) | 499, 888 |
| Hpy99I | CGWCG | 1 cut(s) | 516 |
| HpyAV | CCTTC | 3 cut(s) | 899, 906, 938 |
| HpyCH4III | ACNGT | 5 cut(s) | 358, 451, 621, 778, 1119 |
| HpyCH4V | TGCA | 3 cut(s) | 38, 378, 746 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 32, 174, 359, 443, 524, 752 |
| HpyF3I | CTNAG | 6 cut(s) | 43, 318, 423, 711, 1178, 1197 |
| Hsp92I | GRCGYC | 2 cut(s) | 5, 186 |
| Hsp92II | CATG | 2 cut(s) | 55, 389 |
| HspAI | GCGC | 2 cut(s) | 5, 24 |
| KasI | GGCGCC | 1 cut(s) | 4 |
| Ksp22I | TGATCA | 1 cut(s) | 658 |
| Kzo9I | GATC | 2 cut(s) | 487, 658 |
| LguI | GCTCTTC | 1 cut(s) | 1070 |
| LmnI | GCTCC | 6 cut(s) | 140, 304, 367, 443, 721, 1100 |
| Lsp1109I | GCAGC | 3 cut(s) | 22, 394, 770 |
| LweI | GCATC | 3 cut(s) | 177, 527, 733 |
| MaeI | CTAG | 3 cut(s) | 296, 440, 507 |
| MaeIII | GTNAC | 4 cut(s) | 46, 313, 1133, 1144 |
| MalI | GATC | 2 cut(s) | 489, 660 |
| MboI | GATC | 2 cut(s) | 487, 658 |
| MboII | GAAGA | 6 cut(s) | 100, 284, 623, 1057, 1063, 1071 |
| MfeI | CAATTG | 1 cut(s) | 1122 |
| MhlI | GDGCHC | 2 cut(s) | 691, 1065 |
| Mly113I | GGCGCC | 1 cut(s) | 5 |
| MmeI | TCCRAC | 2 cut(s) | 118, 1237 |
| Mph1103I | ATGCAT | 1 cut(s) | 748 |
| MseI | TTAA | 2 cut(s) | 591, 861 |
| MslI | CAYNNNNRTG | 1 cut(s) | 606 |
| MspI | CCGG | 2 cut(s) | 98, 685 |
| MspR9I | CCNGG | 8 cut(s) | 231, 303, 642, 686, 846, 1039, 1131, 1250 |
| MunI | CAATTG | 1 cut(s) | 1122 |
| MvaI | CCWGG | 7 cut(s) | 231, 303, 642, 846, 1039, 1131, 1250 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 32, 174, 359, 443, 524, 752 |
| NarI | GGCGCC | 1 cut(s) | 5 |
| NciI | CCSGG | 1 cut(s) | 686 |
| NcoI | CCATGG | 1 cut(s) | 51 |
| NdeII | GATC | 2 cut(s) | 487, 658 |
| NlaIII | CATG | 2 cut(s) | 55, 389 |
| NlaIV | GGNNCC | 3 cut(s) | 6, 142, 445 |
| NmuCI | GTSAC | 4 cut(s) | 46, 313, 1133, 1144 |
| NsiI | ATGCAT | 1 cut(s) | 748 |
| PciSI | GCTCTTC | 1 cut(s) | 1070 |
| PfeI | GAWTC | 4 cut(s) | 284, 811, 922, 954 |
| PkrI | GCNGC | 5 cut(s) | 37, 409, 541, 757, 760 |
| PluTI | GGCGCC | 1 cut(s) | 8 |
| Psp6I | CCWGG | 7 cut(s) | 229, 301, 640, 844, 1037, 1129, 1248 |
| PspGI | CCWGG | 7 cut(s) | 229, 301, 640, 844, 1037, 1129, 1248 |
| PspN4I | GGNNCC | 3 cut(s) | 6, 142, 445 |
| PspPI | GGNCC | 2 cut(s) | 707, 1127 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 757, 789 |
| RsaI | GTAC | 3 cut(s) | 703, 775, 887 |
| RsaNI | GTAC | 3 cut(s) | 702, 774, 886 |
| RseI | CAYNNNNRTG | 1 cut(s) | 606 |
| SapI | GCTCTTC | 1 cut(s) | 1070 |
| SaqAI | TTAA | 2 cut(s) | 591, 861 |
| SatI | GCNGC | 5 cut(s) | 36, 408, 540, 756, 759 |
| Sau3AI | GATC | 2 cut(s) | 487, 658 |
| Sau96I | GGNCC | 2 cut(s) | 707, 1127 |
| ScrFI | CCNGG | 8 cut(s) | 231, 303, 642, 686, 846, 1039, 1131, 1250 |
| SduI | GDGCHC | 2 cut(s) | 691, 1065 |
| SfaNI | GCATC | 3 cut(s) | 177, 527, 733 |
| SfcI | CTRYAG | 3 cut(s) | 66, 354, 800 |
| SfoI | GGCGCC | 1 cut(s) | 6 |
| SinI | GGWCC | 1 cut(s) | 1127 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 606 |
| SmlI | CTYRAG | 1 cut(s) | 581 |
| SmoI | CTYRAG | 1 cut(s) | 581 |
| SsiI | CCGC | 3 cut(s) | 540, 755, 1236 |
| SspDI | GGCGCC | 1 cut(s) | 4 |
| SspMI | CTAG | 3 cut(s) | 296, 440, 507 |
| StyD4I | CCNGG | 8 cut(s) | 229, 301, 640, 684, 844, 1037, 1129, 1248 |
| StyI | CCWWGG | 3 cut(s) | 51, 439, 629 |
| TaaI | ACNGT | 5 cut(s) | 358, 451, 621, 778, 1119 |
| TaqI | TCGA | 1 cut(s) | 1108 |
| TatI | WGTACW | 1 cut(s) | 885 |
| TauI | GCSGC | 2 cut(s) | 542, 758 |
| TfiI | GAWTC | 4 cut(s) | 284, 811, 922, 954 |
| Tru1I | TTAA | 2 cut(s) | 591, 861 |
| Tru9I | TTAA | 2 cut(s) | 591, 861 |
| TscAI | CASTG | 5 cut(s) | 51, 196, 322, 454, 1234 |
| TseFI | GTSAC | 4 cut(s) | 46, 313, 1133, 1144 |
| TseI | GCWGC | 3 cut(s) | 35, 407, 758 |
| Tsp45I | GTSAC | 4 cut(s) | 46, 313, 1133, 1144 |
| TspDTI | ATGAA | 3 cut(s) | 624, 1064, 1103 |
| TspRI | CASTG | 5 cut(s) | 51, 196, 322, 454, 1234 |
| VpaK11BI | GGWCC | 1 cut(s) | 1127 |
| XapI | RAATTY | 4 cut(s) | 201, 973, 1184, 1211 |
| XmaJI | CCTAGG | 1 cut(s) | 439 |
| XspI | CTAG | 3 cut(s) | 296, 440, 507 |
| Zsp2I | ATGCAT | 1 cut(s) | 748 |