ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 938 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 232 |
| AccIII | TCCGGA | 2 cut(s) | 366, 396 |
| AciI | CCGC | 2 cut(s) | 526, 1095 |
| AclWI | GGATC | 2 cut(s) | 859, 1007 |
| AcuI | CTGAAG | 1 cut(s) | 641 |
| AfaI | GTAC | 4 cut(s) | 77, 461, 991, 997 |
| AfeI | AGCGCT | 1 cut(s) | 88 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 232, 265, 735 |
| AflIII | ACRYGT | 1 cut(s) | 600 |
| AgsI | TTSAA | 2 cut(s) | 185, 216 |
| AhlI | ACTAGT | 1 cut(s) | 992 |
| AjnI | CCWGG | 1 cut(s) | 912 |
| AluBI | AGCT | 6 cut(s) | 152, 443, 780, 845, 899, 1043 |
| AluI | AGCT | 6 cut(s) | 152, 443, 780, 845, 899, 1043 |
| Alw21I | GWGCWC | 1 cut(s) | 539 |
| AlwI | GGATC | 2 cut(s) | 859, 1007 |
| Ama87I | CYCGRG | 1 cut(s) | 532 |
| Aor13HI | TCCGGA | 2 cut(s) | 366, 396 |
| Aor51HI | AGCGCT | 1 cut(s) | 88 |
| AoxI | GGCC | 5 cut(s) | 197, 466, 505, 726, 949 |
| ApeKI | GCWGC | 5 cut(s) | 89, 149, 522, 686, 1107 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 34, 66 |
| AspLEI | GCGC | 3 cut(s) | 89, 674, 711 |
| AspS9I | GGNCC | 7 cut(s) | 198, 256, 467, 588, 726, 827, 1141 |
| AsuC2I | CCSGG | 1 cut(s) | 632 |
| AsuHPI | GGTGA | 1 cut(s) | 424 |
| AvaI | CYCGRG | 1 cut(s) | 532 |
| AvaII | GGWCC | 4 cut(s) | 256, 588, 827, 1141 |
| Bbv12I | GWGCWC | 1 cut(s) | 539 |
| BbvI | GCAGC | 5 cut(s) | 76, 161, 534, 698, 1119 |
| BccI | CCATC | 5 cut(s) | 326, 445, 661, 720, 953 |
| BceAI | ACGGC | 3 cut(s) | 121, 314, 713 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 34, 68, 850, 884 |
| BciT130I | CCWGG | 1 cut(s) | 914 |
| BciVI | GTATCC | 1 cut(s) | 733 |
| BclI | TGATCA | 1 cut(s) | 262 |
| BcnI | CCSGG | 1 cut(s) | 632 |
| BcuI | ACTAGT | 1 cut(s) | 992 |
| BfaI | CTAG | 8 cut(s) | 248, 425, 717, 752, 822, 896, 993, 999 |
| BfmI | CTRYAG | 1 cut(s) | 985 |
| BfoI | RGCGCY | 2 cut(s) | 90, 712 |
| BfuI | GTATCC | 1 cut(s) | 733 |
| BisI | GCNGC | 7 cut(s) | 90, 150, 523, 526, 687, 1096, 1108 |
| BlsI | GCNGC | 7 cut(s) | 91, 151, 524, 527, 688, 1097, 1109 |
| BmcAI | AGTACT | 2 cut(s) | 991, 997 |
| Bme1390I | CCNGG | 2 cut(s) | 632, 914 |
| Bme18I | GGWCC | 4 cut(s) | 256, 588, 827, 1141 |
| BmeT110I | CYCGRG | 1 cut(s) | 532 |
| BmgT120I | GGNCC | 7 cut(s) | 198, 256, 467, 588, 726, 827, 1141 |
| BmiI | GGNNCC | 2 cut(s) | 421, 749 |
| BmrFI | CCNGG | 2 cut(s) | 632, 914 |
| BmrI | ACTGGG | 1 cut(s) | 553 |
| BmsI | GCATC | 2 cut(s) | 311, 1116 |
| BmuI | ACTGGG | 1 cut(s) | 553 |
| BpuEI | CTTGAG | 1 cut(s) | 1010 |
| BpuMI | CCSGG | 1 cut(s) | 632 |
| Bsa29I | ATCGAT | 1 cut(s) | 115 |
| BsaAI | YACGTR | 1 cut(s) | 601 |
| BsaBI | GATNNNNATC | 1 cut(s) | 77 |
| BsaJI | CCNNGG | 2 cut(s) | 103, 913 |
| BsaWI | WCCGGW | 2 cut(s) | 366, 396 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 232, 265, 735 |
| Bse118I | RCCGGY | 1 cut(s) | 253 |
| Bse1I | ACTGG | 2 cut(s) | 548, 830 |
| Bse3DI | GCAATG | 4 cut(s) | 145, 462, 555, 681 |
| Bse8I | GATNNNNATC | 1 cut(s) | 77 |
| BseAI | TCCGGA | 2 cut(s) | 366, 396 |
| BseBI | CCWGG | 1 cut(s) | 914 |
| BseCI | ATCGAT | 1 cut(s) | 115 |
| BseDI | CCNNGG | 2 cut(s) | 103, 913 |
| BseGI | GGATG | 3 cut(s) | 78, 712, 1036 |
| BseJI | GATNNNNATC | 1 cut(s) | 77 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 232, 265, 735 |
| BseMI | GCAATG | 4 cut(s) | 145, 462, 555, 681 |
| BseMII | CTCAG | 1 cut(s) | 891 |
| BseNI | ACTGG | 2 cut(s) | 548, 830 |
| BseXI | GCAGC | 5 cut(s) | 76, 161, 534, 698, 1119 |
| BseYI | CCCAGC | 2 cut(s) | 238, 735 |
| BsgI | GTGCAG | 2 cut(s) | 87, 705 |
| BshFI | GGCC | 5 cut(s) | 199, 468, 507, 728, 951 |
| BshVI | ATCGAT | 1 cut(s) | 115 |
| BsiHKAI | GWGCWC | 1 cut(s) | 539 |
| BsiHKCI | CYCGRG | 1 cut(s) | 532 |
| BsiSI | CCGG | 4 cut(s) | 254, 367, 397, 632 |
| BslFI | GGGAC | 2 cut(s) | 568, 1087 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 232, 265, 735 |
| BsmFI | GGGAC | 2 cut(s) | 568, 1087 |
| BsmI | GAATGC | 1 cut(s) | 331 |
| BsnI | GGCC | 5 cut(s) | 199, 468, 507, 728, 951 |
| BsoBI | CYCGRG | 1 cut(s) | 532 |
| Bsp1286I | GDGCHC | 1 cut(s) | 539 |
| Bsp13I | TCCGGA | 2 cut(s) | 366, 396 |
| Bsp1407I | TGTACA | 2 cut(s) | 75, 459 |
| Bsp143I | GATC | 4 cut(s) | 262, 864, 1012, 1021 |
| BspACI | CCGC | 2 cut(s) | 526, 1095 |
| BspANI | GGCC | 5 cut(s) | 199, 468, 507, 728, 951 |
| BspCNI | CTCAG | 1 cut(s) | 892 |
| BspDI | ATCGAT | 1 cut(s) | 115 |
| BspEI | TCCGGA | 2 cut(s) | 366, 396 |
| BspHI | TCATGA | 1 cut(s) | 321 |
| BspLI | GGNNCC | 2 cut(s) | 421, 749 |
| BspPI | GGATC | 2 cut(s) | 859, 1007 |
| BsrDI | GCAATG | 4 cut(s) | 145, 462, 555, 681 |
| BsrFI | RCCGGY | 1 cut(s) | 253 |
| BsrGI | TGTACA | 2 cut(s) | 75, 459 |
| BsrI | ACTGG | 2 cut(s) | 548, 830 |
| BssAI | RCCGGY | 1 cut(s) | 253 |
| BssECI | CCNNGG | 2 cut(s) | 103, 913 |
| BssMI | GATC | 4 cut(s) | 262, 864, 1012, 1021 |
| Bst2UI | CCWGG | 1 cut(s) | 914 |
| Bst4CI | ACNGT | 1 cut(s) | 1141 |
| BstAUI | TGTACA | 2 cut(s) | 75, 459 |
| BstBAI | YACGTR | 1 cut(s) | 601 |
| BstC8I | GCNNGC | 1 cut(s) | 1119 |
| BstDEI | CTNAG | 1 cut(s) | 900 |
| BstDSI | CCRYGG | 1 cut(s) | 103 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 263 |
| BstF5I | GGATG | 3 cut(s) | 78, 712, 1036 |
| BstH2I | RGCGCY | 2 cut(s) | 90, 712 |
| BstHHI | GCGC | 3 cut(s) | 89, 674, 711 |
| BstKTI | GATC | 4 cut(s) | 265, 867, 1015, 1024 |
| BstMBI | GATC | 4 cut(s) | 262, 864, 1012, 1021 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 149, 170, 534, 660, 669, 692, 701, 881, 1104 |
| BstNI | CCWGG | 1 cut(s) | 914 |
| BstNSI | RCATGY | 1 cut(s) | 380 |
| BstSCI | CCNGG | 2 cut(s) | 630, 912 |
| BstSFI | CTRYAG | 1 cut(s) | 985 |
| BstV1I | GCAGC | 5 cut(s) | 76, 161, 534, 698, 1119 |
| Bsu15I | ATCGAT | 1 cut(s) | 115 |
| BsuI | GTATCC | 1 cut(s) | 733 |
| BsuRI | GGCC | 5 cut(s) | 199, 468, 507, 728, 951 |
| BsuTUI | ATCGAT | 1 cut(s) | 115 |
| BtgI | CCRYGG | 1 cut(s) | 103 |
| BtsCI | GGATG | 3 cut(s) | 78, 712, 1036 |
| BtsIMutI | CAGTG | 3 cut(s) | 541, 617, 1017 |
| Cac8I | GCNNGC | 1 cut(s) | 1119 |
| CciI | TCATGA | 1 cut(s) | 321 |
| CfoI | GCGC | 3 cut(s) | 89, 674, 711 |
| Cfr10I | RCCGGY | 1 cut(s) | 253 |
| Cfr13I | GGNCC | 7 cut(s) | 198, 256, 467, 588, 726, 827, 1141 |
| ClaI | ATCGAT | 1 cut(s) | 115 |
| CseI | GACGC | 2 cut(s) | 217, 565 |
| Csp6I | GTAC | 4 cut(s) | 76, 460, 990, 996 |
| CviAII | CATG | 6 cut(s) | 109, 322, 377, 494, 512, 862 |
| CviQI | GTAC | 4 cut(s) | 76, 460, 990, 996 |
| DdeI | CTNAG | 1 cut(s) | 900 |
| DpnI | GATC | 4 cut(s) | 264, 866, 1014, 1023 |
| DpnII | GATC | 4 cut(s) | 262, 864, 1012, 1021 |
| Eco47I | GGWCC | 4 cut(s) | 256, 588, 827, 1141 |
| Eco47III | AGCGCT | 1 cut(s) | 88 |
| Eco57I | CTGAAG | 1 cut(s) | 641 |
| Eco88I | CYCGRG | 1 cut(s) | 532 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 263 |
| EcoO109I | RGGNCCY | 1 cut(s) | 467 |
| EcoRII | CCWGG | 1 cut(s) | 912 |
| FaeI | CATG | 6 cut(s) | 112, 325, 380, 497, 515, 865 |
| FaqI | GGGAC | 2 cut(s) | 568, 1087 |
| FatI | CATG | 6 cut(s) | 108, 321, 376, 493, 511, 861 |
| FbaI | TGATCA | 1 cut(s) | 262 |
| Fnu4HI | GCNGC | 7 cut(s) | 90, 150, 523, 526, 687, 1096, 1108 |
| FokI | GGATG | 3 cut(s) | 85, 699, 1043 |
| Fsp4HI | GCNGC | 7 cut(s) | 90, 150, 523, 526, 687, 1096, 1108 |
| FspBI | CTAG | 8 cut(s) | 248, 425, 717, 752, 822, 896, 993, 999 |
| GlaI | GCGC | 3 cut(s) | 88, 673, 710 |
| GluI | GCNGC | 7 cut(s) | 90, 150, 523, 526, 687, 1096, 1108 |
| GsaI | CCCAGC | 2 cut(s) | 242, 739 |
| HaeII | RGCGCY | 2 cut(s) | 90, 712 |
| HaeIII | GGCC | 5 cut(s) | 199, 468, 507, 728, 951 |
| HapII | CCGG | 4 cut(s) | 254, 367, 397, 632 |
| HgaI | GACGC | 2 cut(s) | 217, 565 |
| HhaI | GCGC | 3 cut(s) | 89, 674, 711 |
| Hin1II | CATG | 6 cut(s) | 112, 325, 380, 497, 515, 865 |
| Hin6I | GCGC | 3 cut(s) | 87, 672, 709 |
| HinP1I | GCGC | 3 cut(s) | 87, 672, 709 |
| HinfI | GANTC | 3 cut(s) | 94, 112, 400 |
| HpaII | CCGG | 4 cut(s) | 254, 367, 397, 632 |
| HphI | GGTGA | 1 cut(s) | 424 |
| Hpy166II | GTNNAC | 1 cut(s) | 382 |
| Hpy188I | TCNGA | 1 cut(s) | 62 |
| Hpy188III | TCNNGA | 6 cut(s) | 182, 248, 322, 367, 397, 783 |
| Hpy8I | GTNNAC | 1 cut(s) | 382 |
| Hpy99I | CGWCG | 2 cut(s) | 734, 875 |
| HpyAV | CCTTC | 2 cut(s) | 16, 403 |
| HpyCH4III | ACNGT | 1 cut(s) | 1141 |
| HpyCH4IV | ACGT | 1 cut(s) | 600 |
| HpyCH4V | TGCA | 9 cut(s) | 55, 68, 149, 679, 686, 704, 802, 861, 1129 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 149, 170, 534, 660, 669, 692, 701, 881, 1104 |
| HpyF3I | CTNAG | 1 cut(s) | 900 |
| HpySE526I | ACGT | 1 cut(s) | 600 |
| Hsp92II | CATG | 6 cut(s) | 112, 325, 380, 497, 515, 865 |
| HspAI | GCGC | 3 cut(s) | 87, 672, 709 |
| Kpn2I | TCCGGA | 2 cut(s) | 366, 396 |
| Ksp22I | TGATCA | 1 cut(s) | 262 |
| Kzo9I | GATC | 4 cut(s) | 262, 864, 1012, 1021 |
| LmnI | GCTCC | 3 cut(s) | 169, 440, 753 |
| Lsp1109I | GCAGC | 5 cut(s) | 76, 161, 534, 698, 1119 |
| LweI | GCATC | 2 cut(s) | 311, 1116 |
| MaeI | CTAG | 8 cut(s) | 248, 425, 717, 752, 822, 896, 993, 999 |
| MaeII | ACGT | 1 cut(s) | 600 |
| MaeIII | GTNAC | 5 cut(s) | 340, 427, 603, 613, 838 |
| MalI | GATC | 4 cut(s) | 264, 866, 1014, 1023 |
| MboI | GATC | 4 cut(s) | 262, 864, 1012, 1021 |
| MboII | GAAGA | 2 cut(s) | 31, 634 |
| MhlI | GDGCHC | 1 cut(s) | 539 |
| MluCI | AATT | 7 cut(s) | 56, 351, 786, 876, 1049, 1056, 1130 |
| MlyI | GAGTC | 2 cut(s) | 88, 409 |
| MroI | TCCGGA | 2 cut(s) | 366, 396 |
| MseI | TTAA | 3 cut(s) | 387, 477, 849 |
| MslI | CAYNNNNRTG | 2 cut(s) | 233, 717 |
| MspI | CCGG | 4 cut(s) | 254, 367, 397, 632 |
| MspR9I | CCNGG | 2 cut(s) | 632, 914 |
| Mva1269I | GAATGC | 1 cut(s) | 331 |
| MvaI | CCWGG | 1 cut(s) | 914 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 149, 170, 534, 660, 669, 692, 701, 881, 1104 |
| NciI | CCSGG | 1 cut(s) | 632 |
| NdeII | GATC | 4 cut(s) | 262, 864, 1012, 1021 |
| NlaIII | CATG | 6 cut(s) | 112, 325, 380, 497, 515, 865 |
| NlaIV | GGNNCC | 2 cut(s) | 421, 749 |
| NmuCI | GTSAC | 1 cut(s) | 427 |
| NspI | RCATGY | 1 cut(s) | 380 |
| PaeR7I | CTCGAG | 1 cut(s) | 532 |
| PagI | TCATGA | 1 cut(s) | 321 |
| PctI | GAATGC | 1 cut(s) | 331 |
| PfeI | GAWTC | 1 cut(s) | 112 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 232 |
| PkrI | GCNGC | 7 cut(s) | 91, 151, 524, 527, 688, 1097, 1109 |
| PleI | GAGTC | 2 cut(s) | 88, 408 |
| PpsI | GAGTC | 2 cut(s) | 88, 408 |
| Ppu21I | YACGTR | 1 cut(s) | 601 |
| PsiI | TTATAA | 1 cut(s) | 938 |
| Psp6I | CCWGG | 1 cut(s) | 912 |
| PspFI | CCCAGC | 2 cut(s) | 238, 735 |
| PspGI | CCWGG | 1 cut(s) | 912 |
| PspN4I | GGNNCC | 2 cut(s) | 421, 749 |
| PspPI | GGNCC | 7 cut(s) | 198, 256, 467, 588, 726, 827, 1141 |
| PspXI | VCTCGAGB | 1 cut(s) | 532 |
| RsaI | GTAC | 4 cut(s) | 77, 461, 991, 997 |
| RsaNI | GTAC | 4 cut(s) | 76, 460, 990, 996 |
| RseI | CAYNNNNRTG | 2 cut(s) | 233, 717 |
| SaqAI | TTAA | 3 cut(s) | 387, 477, 849 |
| SatI | GCNGC | 7 cut(s) | 90, 150, 523, 526, 687, 1096, 1108 |
| Sau3AI | GATC | 4 cut(s) | 262, 864, 1012, 1021 |
| Sau96I | GGNCC | 7 cut(s) | 198, 256, 467, 588, 726, 827, 1141 |
| ScaI | AGTACT | 2 cut(s) | 991, 997 |
| SchI | GAGTC | 2 cut(s) | 88, 409 |
| ScrFI | CCNGG | 2 cut(s) | 632, 914 |
| SduI | GDGCHC | 1 cut(s) | 539 |
| SfaNI | GCATC | 2 cut(s) | 311, 1116 |
| SfcI | CTRYAG | 1 cut(s) | 985 |
| Sfr274I | CTCGAG | 1 cut(s) | 532 |
| SinI | GGWCC | 4 cut(s) | 256, 588, 827, 1141 |
| SlaI | CTCGAG | 1 cut(s) | 532 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 233, 717 |
| SmlI | CTYRAG | 2 cut(s) | 532, 1025 |
| SmoI | CTYRAG | 2 cut(s) | 532, 1025 |
| SpeI | ACTAGT | 1 cut(s) | 992 |
| Sse9I | AATT | 7 cut(s) | 56, 351, 786, 876, 1049, 1056, 1130 |
| SsiI | CCGC | 2 cut(s) | 526, 1095 |
| SspMI | CTAG | 8 cut(s) | 248, 425, 717, 752, 822, 896, 993, 999 |
| StyD4I | CCNGG | 2 cut(s) | 630, 912 |
| TaaI | ACNGT | 1 cut(s) | 1141 |
| TaiI | ACGT | 1 cut(s) | 603 |
| TaqI | TCGA | 4 cut(s) | 5, 115, 533, 665 |
| TasI | AATT | 7 cut(s) | 56, 351, 786, 876, 1049, 1056, 1130 |
| TatI | WGTACW | 4 cut(s) | 75, 459, 989, 995 |
| TauI | GCSGC | 2 cut(s) | 528, 1098 |
| TfiI | GAWTC | 1 cut(s) | 112 |
| Tru1I | TTAA | 3 cut(s) | 387, 477, 849 |
| Tru9I | TTAA | 3 cut(s) | 387, 477, 849 |
| TscAI | CASTG | 3 cut(s) | 548, 624, 1024 |
| TseFI | GTSAC | 1 cut(s) | 427 |
| TseI | GCWGC | 5 cut(s) | 89, 149, 522, 686, 1107 |
| Tsp45I | GTSAC | 1 cut(s) | 427 |
| TspDTI | ATGAA | 6 cut(s) | 125, 302, 338, 528, 830, 1053 |
| TspGWI | ACGGA | 2 cut(s) | 346, 516 |
| TspRI | CASTG | 3 cut(s) | 548, 624, 1024 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 232 |
| VpaK11BI | GGWCC | 4 cut(s) | 256, 588, 827, 1141 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 263 |
| XbaI | TCTAGA | 1 cut(s) | 247 |
| XceI | RCATGY | 1 cut(s) | 380 |
| XhoI | CTCGAG | 1 cut(s) | 532 |
| XspI | CTAG | 8 cut(s) | 248, 425, 717, 752, 822, 896, 993, 999 |
| ZrmI | AGTACT | 2 cut(s) | 991, 997 |