ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 743 |
| Acc36I | ACCTGC | 2 cut(s) | 130, 1011 |
| AclWI | GGATC | 1 cut(s) | 438 |
| AcsI | RAATTY | 1 cut(s) | 268 |
| AcuI | CTGAAG | 2 cut(s) | 278, 456 |
| AfaI | GTAC | 4 cut(s) | 22, 85, 157, 708 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 53 |
| AflIII | ACRYGT | 2 cut(s) | 249, 723 |
| AgsI | TTSAA | 2 cut(s) | 358, 968 |
| AluBI | AGCT | 6 cut(s) | 107, 134, 280, 346, 361, 526 |
| AluI | AGCT | 6 cut(s) | 107, 134, 280, 346, 361, 526 |
| Alw21I | GWGCWC | 1 cut(s) | 528 |
| Alw26I | GTCTC | 3 cut(s) | 62, 564, 729 |
| AlwI | GGATC | 1 cut(s) | 438 |
| AoxI | GGCC | 2 cut(s) | 467, 880 |
| ApeKI | GCWGC | 5 cut(s) | 346, 500, 535, 794, 870 |
| ApoI | RAATTY | 1 cut(s) | 268 |
| AseI | ATTAAT | 2 cut(s) | 750, 945 |
| AspLEI | GCGC | 2 cut(s) | 505, 875 |
| AspS9I | GGNCC | 3 cut(s) | 467, 622, 881 |
| AsuC2I | CCSGG | 2 cut(s) | 287, 879 |
| AsuHPI | GGTGA | 1 cut(s) | 461 |
| AvaII | GGWCC | 1 cut(s) | 622 |
| BaeGI | GKGCMC | 1 cut(s) | 302 |
| BanII | GRGCYC | 1 cut(s) | 528 |
| BauI | CACGAG | 1 cut(s) | 561 |
| Bbv12I | GWGCWC | 1 cut(s) | 528 |
| BbvI | GCAGC | 5 cut(s) | 333, 512, 547, 781, 882 |
| BccI | CCATC | 4 cut(s) | 575, 653, 789, 857 |
| BceAI | ACGGC | 2 cut(s) | 612, 807 |
| BcnI | CCSGG | 2 cut(s) | 287, 879 |
| BcoDI | GTCTC | 3 cut(s) | 62, 564, 729 |
| BfaI | CTAG | 2 cut(s) | 732, 785 |
| BfoI | RGCGCY | 1 cut(s) | 876 |
| BfuAI | ACCTGC | 2 cut(s) | 130, 1011 |
| BisI | GCNGC | 5 cut(s) | 347, 501, 536, 795, 871 |
| BlpI | GCTNAGC | 1 cut(s) | 522 |
| BlsI | GCNGC | 5 cut(s) | 348, 502, 537, 796, 872 |
| Bme1390I | CCNGG | 2 cut(s) | 287, 879 |
| Bme18I | GGWCC | 1 cut(s) | 622 |
| BmgT120I | GGNCC | 3 cut(s) | 467, 622, 881 |
| BmiI | GGNNCC | 2 cut(s) | 623, 688 |
| BmrFI | CCNGG | 2 cut(s) | 287, 879 |
| BmsI | GCATC | 1 cut(s) | 487 |
| BpmI | CTGGAG | 1 cut(s) | 260 |
| Bpu10I | CCTNAGC | 1 cut(s) | 933 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 522 |
| BpuEI | CTTGAG | 1 cut(s) | 560 |
| BpuMI | CCSGG | 2 cut(s) | 287, 879 |
| BsaBI | GATNNNNATC | 1 cut(s) | 585 |
| BsaI | GGTCTC | 2 cut(s) | 62, 729 |
| BsaJI | CCNNGG | 1 cut(s) | 877 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 827, 857 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 53 |
| Bse1I | ACTGG | 1 cut(s) | 380 |
| Bse3DI | GCAATG | 1 cut(s) | 690 |
| Bse8I | GATNNNNATC | 1 cut(s) | 585 |
| BseDI | CCNNGG | 1 cut(s) | 877 |
| BseGI | GGATG | 5 cut(s) | 502, 586, 868, 928, 943 |
| BseJI | GATNNNNATC | 1 cut(s) | 585 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 53 |
| BseMI | GCAATG | 1 cut(s) | 690 |
| BseMII | CTCAG | 1 cut(s) | 513 |
| BseNI | ACTGG | 1 cut(s) | 380 |
| BseRI | GAGGAG | 1 cut(s) | 848 |
| BseSI | GKGCMC | 1 cut(s) | 302 |
| BseXI | GCAGC | 5 cut(s) | 333, 512, 547, 781, 882 |
| Bsh1285I | CGRYCG | 1 cut(s) | 589 |
| BshFI | GGCC | 2 cut(s) | 469, 882 |
| BsiEI | CGRYCG | 1 cut(s) | 589 |
| BsiHKAI | GWGCWC | 1 cut(s) | 528 |
| BsiSI | CCGG | 3 cut(s) | 286, 625, 879 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 53 |
| BsmAI | GTCTC | 3 cut(s) | 62, 564, 729 |
| BsnI | GGCC | 2 cut(s) | 469, 882 |
| Bso31I | GGTCTC | 2 cut(s) | 62, 729 |
| Bsp1286I | GDGCHC | 2 cut(s) | 302, 528 |
| Bsp1407I | TGTACA | 1 cut(s) | 706 |
| Bsp143I | GATC | 4 cut(s) | 195, 430, 586, 679 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 522 |
| BspANI | GGCC | 2 cut(s) | 469, 882 |
| BspCNI | CTCAG | 1 cut(s) | 514 |
| BspLI | GGNNCC | 2 cut(s) | 623, 688 |
| BspMI | ACCTGC | 2 cut(s) | 130, 1011 |
| BspPI | GGATC | 1 cut(s) | 438 |
| BspTNI | GGTCTC | 2 cut(s) | 62, 729 |
| BsrDI | GCAATG | 1 cut(s) | 690 |
| BsrGI | TGTACA | 1 cut(s) | 706 |
| BsrI | ACTGG | 1 cut(s) | 380 |
| BssECI | CCNNGG | 1 cut(s) | 877 |
| BssMI | GATC | 4 cut(s) | 195, 430, 586, 679 |
| BssSI | CACGAG | 1 cut(s) | 561 |
| Bst2BI | CACGAG | 1 cut(s) | 561 |
| Bst4CI | ACNGT | 3 cut(s) | 80, 160, 850 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 544 |
| BstAUI | TGTACA | 1 cut(s) | 706 |
| BstC8I | GCNNGC | 3 cut(s) | 351, 507, 630 |
| BstDEI | CTNAG | 4 cut(s) | 51, 342, 522, 933 |
| BstF5I | GGATG | 5 cut(s) | 502, 586, 868, 928, 943 |
| BstH2I | RGCGCY | 1 cut(s) | 876 |
| BstHHI | GCGC | 2 cut(s) | 505, 875 |
| BstKTI | GATC | 4 cut(s) | 198, 433, 589, 682 |
| BstMAI | GTCTC | 3 cut(s) | 62, 564, 729 |
| BstMBI | GATC | 4 cut(s) | 195, 430, 586, 679 |
| BstMCI | CGRYCG | 1 cut(s) | 589 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 506, 532, 544, 879 |
| BstNSI | RCATGY | 3 cut(s) | 253, 407, 727 |
| BstSCI | CCNGG | 2 cut(s) | 285, 877 |
| BstSLI | GKGCMC | 1 cut(s) | 302 |
| BstV1I | GCAGC | 5 cut(s) | 333, 512, 547, 781, 882 |
| BstX2I | RGATCY | 1 cut(s) | 430 |
| BstYI | RGATCY | 1 cut(s) | 430 |
| BsuRI | GGCC | 2 cut(s) | 469, 882 |
| BtsCI | GGATG | 5 cut(s) | 502, 586, 868, 928, 943 |
| BtsI | GCAGTG | 1 cut(s) | 181 |
| BtsIMutI | CAGTG | 1 cut(s) | 181 |
| BveI | ACCTGC | 2 cut(s) | 130, 1011 |
| Cac8I | GCNNGC | 3 cut(s) | 351, 507, 630 |
| CfoI | GCGC | 2 cut(s) | 505, 875 |
| Cfr13I | GGNCC | 3 cut(s) | 467, 622, 881 |
| Csp6I | GTAC | 4 cut(s) | 21, 84, 156, 707 |
| CviAII | CATG | 6 cut(s) | 250, 314, 404, 491, 683, 724 |
| CviQI | GTAC | 4 cut(s) | 21, 84, 156, 707 |
| DdeI | CTNAG | 4 cut(s) | 51, 342, 522, 933 |
| DpnI | GATC | 4 cut(s) | 197, 432, 588, 681 |
| DpnII | GATC | 4 cut(s) | 195, 430, 586, 679 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 743 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 743 |
| Ecl136II | GAGCTC | 1 cut(s) | 526 |
| Eco24I | GRGCYC | 1 cut(s) | 528 |
| Eco31I | GGTCTC | 2 cut(s) | 62, 729 |
| Eco47I | GGWCC | 1 cut(s) | 622 |
| Eco53kI | GAGCTC | 1 cut(s) | 526 |
| Eco57I | CTGAAG | 2 cut(s) | 278, 456 |
| EcoICRI | GAGCTC | 1 cut(s) | 526 |
| EcoT38I | GRGCYC | 1 cut(s) | 528 |
| FaeI | CATG | 6 cut(s) | 253, 317, 407, 494, 686, 727 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 374, 406 |
| FatI | CATG | 6 cut(s) | 249, 313, 403, 490, 682, 723 |
| Fnu4HI | GCNGC | 5 cut(s) | 347, 501, 536, 795, 871 |
| FokI | GGATG | 5 cut(s) | 509, 593, 875, 935, 950 |
| FriOI | GRGCYC | 1 cut(s) | 528 |
| Fsp4HI | GCNGC | 5 cut(s) | 347, 501, 536, 795, 871 |
| FspBI | CTAG | 2 cut(s) | 732, 785 |
| GlaI | GCGC | 2 cut(s) | 504, 874 |
| GluI | GCNGC | 5 cut(s) | 347, 501, 536, 795, 871 |
| GsuI | CTGGAG | 1 cut(s) | 260 |
| HaeII | RGCGCY | 1 cut(s) | 876 |
| HaeIII | GGCC | 2 cut(s) | 469, 882 |
| HapII | CCGG | 3 cut(s) | 286, 625, 879 |
| HhaI | GCGC | 2 cut(s) | 505, 875 |
| Hin1II | CATG | 6 cut(s) | 253, 317, 407, 494, 686, 727 |
| Hin6I | GCGC | 2 cut(s) | 503, 873 |
| HinP1I | GCGC | 2 cut(s) | 503, 873 |
| HincII | GTYRAC | 1 cut(s) | 846 |
| HindII | GTYRAC | 1 cut(s) | 846 |
| HindIII | AAGCTT | 1 cut(s) | 132 |
| HpaI | GTTAAC | 1 cut(s) | 846 |
| HpaII | CCGG | 3 cut(s) | 286, 625, 879 |
| HphI | GGTGA | 1 cut(s) | 461 |
| Hpy166II | GTNNAC | 2 cut(s) | 21, 846 |
| Hpy188I | TCNGA | 4 cut(s) | 95, 178, 246, 475 |
| Hpy188III | TCNNGA | 4 cut(s) | 193, 434, 551, 1026 |
| Hpy8I | GTNNAC | 2 cut(s) | 21, 846 |
| Hpy99I | CGWCG | 1 cut(s) | 84 |
| HpyAV | CCTTC | 2 cut(s) | 480, 992 |
| HpyCH4III | ACNGT | 3 cut(s) | 80, 160, 850 |
| HpyCH4IV | ACGT | 1 cut(s) | 744 |
| HpyCH4V | TGCA | 5 cut(s) | 407, 500, 535, 632, 676 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 506, 532, 544, 879 |
| HpyF3I | CTNAG | 4 cut(s) | 51, 342, 522, 933 |
| HpySE526I | ACGT | 1 cut(s) | 744 |
| Hsp92II | CATG | 6 cut(s) | 253, 317, 407, 494, 686, 727 |
| HspAI | GCGC | 2 cut(s) | 503, 873 |
| KspAI | GTTAAC | 1 cut(s) | 846 |
| Kzo9I | GATC | 4 cut(s) | 195, 430, 586, 679 |
| LmnI | GCTCC | 1 cut(s) | 692 |
| Lsp1109I | GCAGC | 5 cut(s) | 333, 512, 547, 781, 882 |
| LweI | GCATC | 1 cut(s) | 487 |
| MaeI | CTAG | 2 cut(s) | 732, 785 |
| MaeII | ACGT | 1 cut(s) | 744 |
| MaeIII | GTNAC | 2 cut(s) | 160, 787 |
| MalI | GATC | 4 cut(s) | 197, 432, 588, 681 |
| MboI | GATC | 4 cut(s) | 195, 430, 586, 679 |
| MboII | GAAGA | 1 cut(s) | 596 |
| MflI | RGATCY | 1 cut(s) | 430 |
| MhlI | GDGCHC | 2 cut(s) | 302, 528 |
| MluCI | AATT | 6 cut(s) | 36, 115, 268, 610, 697, 994 |
| MmeI | TCCRAC | 2 cut(s) | 71, 1023 |
| MnlI | CCTC | 6 cut(s) | 284, 409, 469, 487, 799, 826 |
| MseI | TTAA | 8 cut(s) | 35, 335, 369, 750, 845, 909, 945, 993 |
| MslI | CAYNNNNRTG | 1 cut(s) | 495 |
| MspI | CCGG | 3 cut(s) | 286, 625, 879 |
| MspR9I | CCNGG | 2 cut(s) | 287, 879 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 506, 532, 544, 879 |
| NciI | CCSGG | 2 cut(s) | 287, 879 |
| NdeII | GATC | 4 cut(s) | 195, 430, 586, 679 |
| NlaIII | CATG | 6 cut(s) | 253, 317, 407, 494, 686, 727 |
| NlaIV | GGNNCC | 2 cut(s) | 623, 688 |
| NmuCI | GTSAC | 1 cut(s) | 787 |
| NspI | RCATGY | 3 cut(s) | 253, 407, 727 |
| PciI | ACATGT | 2 cut(s) | 249, 723 |
| PfoI | TCCNGGA | 1 cut(s) | 285 |
| PkrI | GCNGC | 5 cut(s) | 348, 502, 537, 796, 872 |
| Ple19I | CGATCG | 1 cut(s) | 589 |
| PscI | ACATGT | 2 cut(s) | 249, 723 |
| PshBI | ATTAAT | 2 cut(s) | 750, 945 |
| Psp124BI | GAGCTC | 1 cut(s) | 528 |
| PspN4I | GGNNCC | 2 cut(s) | 623, 688 |
| PspPI | GGNCC | 3 cut(s) | 467, 622, 881 |
| PsuI | RGATCY | 1 cut(s) | 430 |
| PvuI | CGATCG | 1 cut(s) | 589 |
| RsaI | GTAC | 4 cut(s) | 22, 85, 157, 708 |
| RsaNI | GTAC | 4 cut(s) | 21, 84, 156, 707 |
| RseI | CAYNNNNRTG | 1 cut(s) | 495 |
| SacI | GAGCTC | 1 cut(s) | 528 |
| SaqAI | TTAA | 8 cut(s) | 35, 335, 369, 750, 845, 909, 945, 993 |
| SatI | GCNGC | 5 cut(s) | 347, 501, 536, 795, 871 |
| Sau3AI | GATC | 4 cut(s) | 195, 430, 586, 679 |
| Sau96I | GGNCC | 3 cut(s) | 467, 622, 881 |
| ScrFI | CCNGG | 2 cut(s) | 287, 879 |
| SduI | GDGCHC | 2 cut(s) | 302, 528 |
| SfaNI | GCATC | 1 cut(s) | 487 |
| SinI | GGWCC | 1 cut(s) | 622 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 495 |
| SmlI | CTYRAG | 1 cut(s) | 575 |
| SmoI | CTYRAG | 1 cut(s) | 575 |
| Sse9I | AATT | 6 cut(s) | 36, 115, 268, 610, 697, 994 |
| SspMI | CTAG | 2 cut(s) | 732, 785 |
| SstI | GAGCTC | 1 cut(s) | 528 |
| StyD4I | CCNGG | 2 cut(s) | 285, 877 |
| TaaI | ACNGT | 3 cut(s) | 80, 160, 850 |
| TaiI | ACGT | 1 cut(s) | 747 |
| TaqI | TCGA | 1 cut(s) | 550 |
| TasI | AATT | 6 cut(s) | 36, 115, 268, 610, 697, 994 |
| TatI | WGTACW | 2 cut(s) | 20, 706 |
| Tru1I | TTAA | 8 cut(s) | 35, 335, 369, 750, 845, 909, 945, 993 |
| Tru9I | TTAA | 8 cut(s) | 35, 335, 369, 750, 845, 909, 945, 993 |
| TscAI | CASTG | 1 cut(s) | 188 |
| TseFI | GTSAC | 1 cut(s) | 787 |
| TseI | GCWGC | 5 cut(s) | 346, 500, 535, 794, 870 |
| Tsp45I | GTSAC | 1 cut(s) | 787 |
| TspDTI | ATGAA | 2 cut(s) | 302, 596 |
| TspRI | CASTG | 1 cut(s) | 188 |
| VpaK11BI | GGWCC | 1 cut(s) | 622 |
| VspI | ATTAAT | 2 cut(s) | 750, 945 |
| XapI | RAATTY | 1 cut(s) | 268 |
| XceI | RCATGY | 3 cut(s) | 253, 407, 727 |
| XspI | CTAG | 2 cut(s) | 732, 785 |