Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 2 - 77 | 3.6e-08 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 122, 272 |
| AcoI | YGGCCR | 1 cut(s) | 119 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 255 |
| AgsI | TTSAA | 2 cut(s) | 23, 62 |
| AhlI | ACTAGT | 1 cut(s) | 74 |
| AoxI | GGCC | 1 cut(s) | 119 |
| BccI | CCATC | 1 cut(s) | 253 |
| BclI | TGATCA | 1 cut(s) | 9 |
| BcuI | ACTAGT | 1 cut(s) | 74 |
| BfaI | CTAG | 1 cut(s) | 75 |
| BisI | GCNGC | 1 cut(s) | 122 |
| BlpI | GCTNAGC | 1 cut(s) | 148 |
| BlsI | GCNGC | 1 cut(s) | 123 |
| BmsI | GCATC | 2 cut(s) | 38, 99 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 148 |
| BsaAI | YACGTR | 1 cut(s) | 155 |
| BsaJI | CCNNGG | 2 cut(s) | 116, 249 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 255 |
| Bse1I | ACTGG | 1 cut(s) | 34 |
| Bse3DI | GCAATG | 1 cut(s) | 171 |
| BseDI | CCNNGG | 2 cut(s) | 116, 249 |
| BseGI | GGATG | 2 cut(s) | 245, 307 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 255 |
| BseMI | GCAATG | 1 cut(s) | 171 |
| BseNI | ACTGG | 1 cut(s) | 34 |
| BshFI | GGCC | 1 cut(s) | 121 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 255 |
| BsnI | GGCC | 1 cut(s) | 121 |
| Bsp143I | GATC | 1 cut(s) | 9 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 148 |
| BspACI | CCGC | 2 cut(s) | 122, 272 |
| BspANI | GGCC | 1 cut(s) | 121 |
| BsrDI | GCAATG | 1 cut(s) | 171 |
| BsrI | ACTGG | 1 cut(s) | 34 |
| BssECI | CCNNGG | 2 cut(s) | 116, 249 |
| BssMI | GATC | 1 cut(s) | 9 |
| BssT1I | CCWWGG | 2 cut(s) | 116, 249 |
| Bst4CI | ACNGT | 1 cut(s) | 208 |
| BstBAI | YACGTR | 1 cut(s) | 155 |
| BstC8I | GCNNGC | 1 cut(s) | 88 |
| BstDEI | CTNAG | 1 cut(s) | 148 |
| BstF5I | GGATG | 2 cut(s) | 245, 307 |
| BstKTI | GATC | 1 cut(s) | 12 |
| BstMBI | GATC | 1 cut(s) | 9 |
| BstNSI | RCATGY | 2 cut(s) | 90, 263 |
| BsuRI | GGCC | 1 cut(s) | 121 |
| BtgZI | GCGATG | 1 cut(s) | 61 |
| BtsCI | GGATG | 2 cut(s) | 245, 307 |
| Cac8I | GCNNGC | 1 cut(s) | 88 |
| CviAII | CATG | 5 cut(s) | 87, 135, 229, 260, 329 |
| CviJI | RGCY | 5 cut(s) | 58, 121, 139, 212, 234 |
| CviKI_1 | RGCY | 5 cut(s) | 58, 121, 139, 212, 234 |
| DdeI | CTNAG | 1 cut(s) | 148 |
| DpnI | GATC | 1 cut(s) | 11 |
| DpnII | GATC | 1 cut(s) | 9 |
| EaeI | YGGCCR | 1 cut(s) | 119 |
| Eco130I | CCWWGG | 2 cut(s) | 116, 249 |
| EcoT14I | CCWWGG | 2 cut(s) | 116, 249 |
| EcoT22I | ATGCAT | 1 cut(s) | 92 |
| ErhI | CCWWGG | 2 cut(s) | 116, 249 |
| FaeI | CATG | 5 cut(s) | 90, 138, 232, 263, 332 |
| FatI | CATG | 5 cut(s) | 86, 134, 228, 259, 328 |
| FauI | CCCGC | 1 cut(s) | 279 |
| FbaI | TGATCA | 1 cut(s) | 9 |
| Fnu4HI | GCNGC | 1 cut(s) | 122 |
| FokI | GGATG | 2 cut(s) | 232, 314 |
| Fsp4HI | GCNGC | 1 cut(s) | 122 |
| FspBI | CTAG | 1 cut(s) | 75 |
| GluI | GCNGC | 1 cut(s) | 122 |
| HaeIII | GGCC | 1 cut(s) | 121 |
| Hin1II | CATG | 5 cut(s) | 90, 138, 232, 263, 332 |
| HinfI | GANTC | 2 cut(s) | 68, 312 |
| Hpy188III | TCNNGA | 1 cut(s) | 194 |
| HpyAV | CCTTC | 3 cut(s) | 40, 191, 332 |
| HpyCH4III | ACNGT | 1 cut(s) | 208 |
| HpyCH4IV | ACGT | 1 cut(s) | 154 |
| HpyCH4V | TGCA | 3 cut(s) | 86, 90, 134 |
| HpyF3I | CTNAG | 1 cut(s) | 148 |
| HpySE526I | ACGT | 1 cut(s) | 154 |
| Hsp92II | CATG | 5 cut(s) | 90, 138, 232, 263, 332 |
| Ksp22I | TGATCA | 1 cut(s) | 9 |
| Kzo9I | GATC | 1 cut(s) | 9 |
| LpnPI | CCDG | 2 cut(s) | 40, 47 |
| LweI | GCATC | 2 cut(s) | 38, 99 |
| MaeI | CTAG | 1 cut(s) | 75 |
| MaeII | ACGT | 1 cut(s) | 154 |
| MalI | GATC | 1 cut(s) | 11 |
| MboI | GATC | 1 cut(s) | 9 |
| MboII | GAAGA | 2 cut(s) | 182, 284 |
| MluCI | AATT | 1 cut(s) | 129 |
| MnlI | CCTC | 2 cut(s) | 62, 109 |
| Mph1103I | ATGCAT | 1 cut(s) | 92 |
| MseI | TTAA | 1 cut(s) | 334 |
| NdeII | GATC | 1 cut(s) | 9 |
| NlaIII | CATG | 5 cut(s) | 90, 138, 232, 263, 332 |
| NsiI | ATGCAT | 1 cut(s) | 92 |
| NspI | RCATGY | 2 cut(s) | 90, 263 |
| PaeI | GCATGC | 1 cut(s) | 90 |
| PfeI | GAWTC | 2 cut(s) | 68, 312 |
| PkrI | GCNGC | 1 cut(s) | 123 |
| Ppu21I | YACGTR | 1 cut(s) | 155 |
| SaqAI | TTAA | 1 cut(s) | 334 |
| SatI | GCNGC | 1 cut(s) | 122 |
| Sau3AI | GATC | 1 cut(s) | 9 |
| SetI | ASST | 4 cut(s) | 118, 157, 173, 324 |
| SfaNI | GCATC | 2 cut(s) | 38, 99 |
| SpeI | ACTAGT | 1 cut(s) | 74 |
| SphI | GCATGC | 1 cut(s) | 90 |
| Sse9I | AATT | 1 cut(s) | 129 |
| SsiI | CCGC | 2 cut(s) | 122, 272 |
| SspMI | CTAG | 1 cut(s) | 75 |
| StyI | CCWWGG | 2 cut(s) | 116, 249 |
| TaaI | ACNGT | 1 cut(s) | 208 |
| TaiI | ACGT | 1 cut(s) | 157 |
| TaqI | TCGA | 1 cut(s) | 71 |
| TasI | AATT | 1 cut(s) | 129 |
| TauI | GCSGC | 1 cut(s) | 124 |
| TfiI | GAWTC | 2 cut(s) | 68, 312 |
| Tru1I | TTAA | 1 cut(s) | 334 |
| Tru9I | TTAA | 1 cut(s) | 334 |
| TspDTI | ATGAA | 1 cut(s) | 164 |
| XceI | RCATGY | 2 cut(s) | 90, 263 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 252 |
| XspI | CTAG | 1 cut(s) | 75 |
| Zsp2I | ATGCAT | 1 cut(s) | 92 |