ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 125 |
| AclWI | GGATC | 2 cut(s) | 106, 256 |
| AcsI | RAATTY | 2 cut(s) | 291, 533 |
| AcuI | CTGAAG | 2 cut(s) | 524, 732 |
| AfaI | GTAC | 3 cut(s) | 277, 482, 565 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 206, 389 |
| AgsI | TTSAA | 5 cut(s) | 53, 400, 417, 457, 751 |
| AhlI | ACTAGT | 1 cut(s) | 70 |
| AjnI | CCWGG | 2 cut(s) | 22, 79 |
| AjuI | GAANNNNNNNTTGG | 3 cut(s) | 29, 699, 731 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 171, 203 |
| AluBI | AGCT | 3 cut(s) | 203, 311, 448 |
| AluI | AGCT | 3 cut(s) | 203, 311, 448 |
| Alw21I | GWGCWC | 2 cut(s) | 22, 609 |
| Alw26I | GTCTC | 1 cut(s) | 737 |
| Alw44I | GTGCAC | 2 cut(s) | 18, 605 |
| AlwI | GGATC | 2 cut(s) | 106, 256 |
| AoxI | GGCC | 1 cut(s) | 391 |
| ApaLI | GTGCAC | 2 cut(s) | 18, 605 |
| ApeKI | GCWGC | 2 cut(s) | 329, 699 |
| ApoI | RAATTY | 2 cut(s) | 291, 533 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 537 |
| AspS9I | GGNCC | 2 cut(s) | 84, 391 |
| AsuHPI | GGTGA | 1 cut(s) | 440 |
| AsuNHI | GCTAGC | 1 cut(s) | 307 |
| AvaII | GGWCC | 1 cut(s) | 84 |
| BaeGI | GKGCMC | 2 cut(s) | 22, 609 |
| Bbv12I | GWGCWC | 2 cut(s) | 22, 609 |
| BbvCI | CCTCAGC | 1 cut(s) | 204 |
| BbvI | GCAGC | 2 cut(s) | 316, 686 |
| BccI | CCATC | 2 cut(s) | 152, 425 |
| BcgI | CGANNNNNNTGC | 1 cut(s) | 33 |
| BciT130I | CCWGG | 2 cut(s) | 24, 81 |
| BcoDI | GTCTC | 1 cut(s) | 737 |
| BcuI | ACTAGT | 1 cut(s) | 70 |
| BfaI | CTAG | 5 cut(s) | 71, 150, 308, 333, 422 |
| BisI | GCNGC | 2 cut(s) | 330, 700 |
| BlsI | GCNGC | 2 cut(s) | 331, 701 |
| Bme1390I | CCNGG | 2 cut(s) | 24, 81 |
| Bme18I | GGWCC | 1 cut(s) | 84 |
| BmgT120I | GGNCC | 2 cut(s) | 84, 391 |
| BmiI | GGNNCC | 2 cut(s) | 85, 392 |
| BmrFI | CCNGG | 2 cut(s) | 24, 81 |
| BmsI | GCATC | 2 cut(s) | 93, 337 |
| BmtI | GCTAGC | 1 cut(s) | 311 |
| Bpu10I | CCTNAGC | 1 cut(s) | 204 |
| BsaI | GGTCTC | 1 cut(s) | 737 |
| BsaJI | CCNNGG | 5 cut(s) | 79, 80, 279, 484, 622 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 171, 201 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 206, 389 |
| Bse1I | ACTGG | 1 cut(s) | 159 |
| BseBI | CCWGG | 2 cut(s) | 24, 81 |
| BseDI | CCNNGG | 5 cut(s) | 79, 80, 279, 484, 622 |
| BseGI | GGATG | 3 cut(s) | 163, 364, 664 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 206, 389 |
| BseMII | CTCAG | 2 cut(s) | 158, 195 |
| BseNI | ACTGG | 1 cut(s) | 159 |
| BseSI | GKGCMC | 2 cut(s) | 22, 609 |
| BseXI | GCAGC | 2 cut(s) | 316, 686 |
| BsgI | GTGCAG | 2 cut(s) | 204, 685 |
| BshFI | GGCC | 1 cut(s) | 393 |
| BsiHKAI | GWGCWC | 2 cut(s) | 22, 609 |
| BslFI | GGGAC | 1 cut(s) | 640 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 206, 389 |
| BsmAI | GTCTC | 1 cut(s) | 737 |
| BsmFI | GGGAC | 1 cut(s) | 640 |
| BsmI | GAATGC | 1 cut(s) | 412 |
| BsnI | GGCC | 1 cut(s) | 393 |
| Bso31I | GGTCTC | 1 cut(s) | 737 |
| Bsp1286I | GDGCHC | 2 cut(s) | 22, 609 |
| Bsp143I | GATC | 3 cut(s) | 111, 248, 522 |
| Bsp19I | CCATGG | 1 cut(s) | 279 |
| BspANI | GGCC | 1 cut(s) | 393 |
| BspCNI | CTCAG | 2 cut(s) | 159, 196 |
| BspLI | GGNNCC | 2 cut(s) | 85, 392 |
| BspOI | GCTAGC | 1 cut(s) | 311 |
| BspPI | GGATC | 2 cut(s) | 106, 256 |
| BspTNI | GGTCTC | 1 cut(s) | 737 |
| BsrI | ACTGG | 1 cut(s) | 159 |
| BssECI | CCNNGG | 5 cut(s) | 79, 80, 279, 484, 622 |
| BssMI | GATC | 3 cut(s) | 111, 248, 522 |
| BssT1I | CCWWGG | 3 cut(s) | 279, 484, 622 |
| Bst2UI | CCWGG | 2 cut(s) | 24, 81 |
| Bst4CI | ACNGT | 2 cut(s) | 646, 684 |
| Bst6I | CTCTTC | 2 cut(s) | 618, 764 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 418 |
| BstC8I | GCNNGC | 2 cut(s) | 309, 575 |
| BstDEI | CTNAG | 2 cut(s) | 167, 204 |
| BstDSI | CCRYGG | 1 cut(s) | 279 |
| BstF5I | GGATG | 3 cut(s) | 163, 364, 664 |
| BstKTI | GATC | 3 cut(s) | 114, 251, 525 |
| BstMAI | GTCTC | 1 cut(s) | 737 |
| BstMBI | GATC | 3 cut(s) | 111, 248, 522 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 418 |
| BstNI | CCWGG | 2 cut(s) | 24, 81 |
| BstNSI | RCATGY | 1 cut(s) | 577 |
| BstSCI | CCNGG | 2 cut(s) | 22, 79 |
| BstSLI | GKGCMC | 2 cut(s) | 22, 609 |
| BstV1I | GCAGC | 2 cut(s) | 316, 686 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 137 |
| BsuRI | GGCC | 1 cut(s) | 393 |
| BtgI | CCRYGG | 1 cut(s) | 279 |
| BtgZI | GCGATG | 1 cut(s) | 310 |
| BtsCI | GGATG | 3 cut(s) | 163, 364, 664 |
| BtsIMutI | CAGTG | 3 cut(s) | 36, 548, 702 |
| Cac8I | GCNNGC | 2 cut(s) | 309, 575 |
| Cfr13I | GGNCC | 2 cut(s) | 84, 391 |
| CsiI | ACCWGGT | 1 cut(s) | 22 |
| Csp6I | GTAC | 3 cut(s) | 276, 481, 564 |
| CviAII | CATG | 6 cut(s) | 268, 280, 529, 574, 598, 655 |
| CviJI | RGCY | 6 cut(s) | 32, 148, 203, 311, 393, 448 |
| CviKI_1 | RGCY | 6 cut(s) | 32, 148, 203, 311, 393, 448 |
| CviQI | GTAC | 3 cut(s) | 276, 481, 564 |
| DdeI | CTNAG | 2 cut(s) | 167, 204 |
| DpnI | GATC | 3 cut(s) | 113, 250, 524 |
| DpnII | GATC | 3 cut(s) | 111, 248, 522 |
| DraI | TTTAAA | 1 cut(s) | 519 |
| Eam1104I | CTCTTC | 2 cut(s) | 618, 764 |
| EarI | CTCTTC | 2 cut(s) | 618, 764 |
| Eco130I | CCWWGG | 3 cut(s) | 279, 484, 622 |
| Eco31I | GGTCTC | 1 cut(s) | 737 |
| Eco47I | GGWCC | 1 cut(s) | 84 |
| Eco57I | CTGAAG | 2 cut(s) | 524, 732 |
| EcoO109I | RGGNCCY | 1 cut(s) | 84 |
| EcoRI | GAATTC | 1 cut(s) | 533 |
| EcoRII | CCWGG | 2 cut(s) | 22, 79 |
| EcoT14I | CCWWGG | 3 cut(s) | 279, 484, 622 |
| ErhI | CCWWGG | 3 cut(s) | 279, 484, 622 |
| FaeI | CATG | 6 cut(s) | 271, 283, 532, 577, 601, 658 |
| FaqI | GGGAC | 1 cut(s) | 640 |
| FatI | CATG | 6 cut(s) | 267, 279, 528, 573, 597, 654 |
| Fnu4HI | GCNGC | 2 cut(s) | 330, 700 |
| FokI | GGATG | 3 cut(s) | 170, 371, 671 |
| Fsp4HI | GCNGC | 2 cut(s) | 330, 700 |
| FspBI | CTAG | 5 cut(s) | 71, 150, 308, 333, 422 |
| GluI | GCNGC | 2 cut(s) | 330, 700 |
| HaeIII | GGCC | 1 cut(s) | 393 |
| Hin1II | CATG | 6 cut(s) | 271, 283, 532, 577, 601, 658 |
| HincII | GTYRAC | 1 cut(s) | 649 |
| HindII | GTYRAC | 1 cut(s) | 649 |
| HindIII | AAGCTT | 1 cut(s) | 446 |
| HinfI | GANTC | 1 cut(s) | 707 |
| HphI | GGTGA | 1 cut(s) | 440 |
| Hpy166II | GTNNAC | 5 cut(s) | 20, 140, 164, 607, 649 |
| Hpy188I | TCNGA | 1 cut(s) | 712 |
| Hpy188III | TCNNGA | 1 cut(s) | 509 |
| Hpy8I | GTNNAC | 5 cut(s) | 20, 140, 164, 607, 649 |
| HpyAV | CCTTC | 2 cut(s) | 419, 548 |
| HpyCH4III | ACNGT | 2 cut(s) | 646, 684 |
| HpyCH4V | TGCA | 5 cut(s) | 20, 92, 185, 607, 702 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 418 |
| HpyF3I | CTNAG | 2 cut(s) | 167, 204 |
| Hsp92II | CATG | 6 cut(s) | 271, 283, 532, 577, 601, 658 |
| Kzo9I | GATC | 3 cut(s) | 111, 248, 522 |
| LmnI | GCTCC | 1 cut(s) | 355 |
| Lsp1109I | GCAGC | 2 cut(s) | 316, 686 |
| LweI | GCATC | 2 cut(s) | 93, 337 |
| MabI | ACCWGGT | 1 cut(s) | 22 |
| MaeI | CTAG | 5 cut(s) | 71, 150, 308, 333, 422 |
| MalI | GATC | 3 cut(s) | 113, 250, 524 |
| MboI | GATC | 3 cut(s) | 111, 248, 522 |
| MboII | GAAGA | 1 cut(s) | 605 |
| MhlI | GDGCHC | 2 cut(s) | 22, 609 |
| MluCI | AATT | 4 cut(s) | 12, 291, 533, 753 |
| MnlI | CCTC | 5 cut(s) | 173, 199, 277, 402, 567 |
| MroXI | GAANNNNTTC | 1 cut(s) | 537 |
| MseI | TTAA | 3 cut(s) | 258, 518, 639 |
| MslI | CAYNNNNRTG | 2 cut(s) | 602, 657 |
| MspA1I | CMGCKG | 1 cut(s) | 203 |
| MspR9I | CCNGG | 2 cut(s) | 24, 81 |
| Mva1269I | GAATGC | 1 cut(s) | 412 |
| MvaI | CCWGG | 2 cut(s) | 24, 81 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 418 |
| NcoI | CCATGG | 1 cut(s) | 279 |
| NdeII | GATC | 3 cut(s) | 111, 248, 522 |
| NheI | GCTAGC | 1 cut(s) | 307 |
| NlaIII | CATG | 6 cut(s) | 271, 283, 532, 577, 601, 658 |
| NlaIV | GGNNCC | 2 cut(s) | 85, 392 |
| NspI | RCATGY | 1 cut(s) | 577 |
| PaeI | GCATGC | 1 cut(s) | 577 |
| PasI | CCCWGGG | 1 cut(s) | 80 |
| PctI | GAATGC | 1 cut(s) | 412 |
| PdmI | GAANNNNTTC | 1 cut(s) | 537 |
| PfeI | GAWTC | 1 cut(s) | 707 |
| PkrI | GCNGC | 2 cut(s) | 331, 701 |
| PpuMI | RGGWCCY | 1 cut(s) | 84 |
| PsiI | TTATAA | 1 cut(s) | 125 |
| Psp5II | RGGWCCY | 1 cut(s) | 84 |
| Psp6I | CCWGG | 2 cut(s) | 22, 79 |
| PspGI | CCWGG | 2 cut(s) | 22, 79 |
| PspN4I | GGNNCC | 2 cut(s) | 85, 392 |
| PspPI | GGNCC | 2 cut(s) | 84, 391 |
| PspPPI | RGGWCCY | 1 cut(s) | 84 |
| PvuII | CAGCTG | 1 cut(s) | 203 |
| RsaI | GTAC | 3 cut(s) | 277, 482, 565 |
| RsaNI | GTAC | 3 cut(s) | 276, 481, 564 |
| RseI | CAYNNNNRTG | 2 cut(s) | 602, 657 |
| SaqAI | TTAA | 3 cut(s) | 258, 518, 639 |
| SatI | GCNGC | 2 cut(s) | 330, 700 |
| Sau3AI | GATC | 3 cut(s) | 111, 248, 522 |
| Sau96I | GGNCC | 2 cut(s) | 84, 391 |
| ScrFI | CCNGG | 2 cut(s) | 24, 81 |
| SduI | GDGCHC | 2 cut(s) | 22, 609 |
| SexAI | ACCWGGT | 1 cut(s) | 22 |
| SfaNI | GCATC | 2 cut(s) | 93, 337 |
| SinI | GGWCC | 1 cut(s) | 84 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 602, 657 |
| SpeI | ACTAGT | 1 cut(s) | 70 |
| SphI | GCATGC | 1 cut(s) | 577 |
| Sse9I | AATT | 4 cut(s) | 12, 291, 533, 753 |
| SspMI | CTAG | 5 cut(s) | 71, 150, 308, 333, 422 |
| StyD4I | CCNGG | 2 cut(s) | 22, 79 |
| StyI | CCWWGG | 3 cut(s) | 279, 484, 622 |
| TaaI | ACNGT | 2 cut(s) | 646, 684 |
| TasI | AATT | 4 cut(s) | 12, 291, 533, 753 |
| TatI | WGTACW | 1 cut(s) | 563 |
| TfiI | GAWTC | 1 cut(s) | 707 |
| Tru1I | TTAA | 3 cut(s) | 258, 518, 639 |
| Tru9I | TTAA | 3 cut(s) | 258, 518, 639 |
| TscAI | CASTG | 3 cut(s) | 43, 548, 709 |
| TseI | GCWGC | 2 cut(s) | 329, 699 |
| TspDTI | ATGAA | 4 cut(s) | 244, 313, 375, 605 |
| TspRI | CASTG | 3 cut(s) | 43, 548, 709 |
| VneI | GTGCAC | 2 cut(s) | 18, 605 |
| VpaK11BI | GGWCC | 1 cut(s) | 84 |
| XapI | RAATTY | 2 cut(s) | 291, 533 |
| XceI | RCATGY | 1 cut(s) | 577 |
| XmnI | GAANNNNTTC | 1 cut(s) | 537 |
| XspI | CTAG | 5 cut(s) | 71, 150, 308, 333, 422 |