ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 259, 2352 |
| AccB1I | GGYRCC | 3 cut(s) | 539, 1930, 2097 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1312 |
| AccI | GTMKAC | 2 cut(s) | 2112, 2353 |
| AciI | CCGC | 7 cut(s) | 922, 1322, 1517, 1543, 1815, 3084, 3159 |
| AclI | AACGTT | 2 cut(s) | 223, 940 |
| AclWI | GGATC | 4 cut(s) | 84, 1229, 1242, 2586 |
| AcoI | YGGCCR | 4 cut(s) | 1303, 2333, 2615, 2713 |
| AcsI | RAATTY | 9 cut(s) | 19, 65, 488, 613, 813, 1885, 2797, 2951, 3403 |
| AcuI | CTGAAG | 2 cut(s) | 819, 1185 |
| AfaI | GTAC | 7 cut(s) | 72, 165, 259, 996, 1331, 1924, 2312 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 1312, 2540, 2541, 2813, 2872, 3020, 3442 |
| AflII | CTTAAG | 1 cut(s) | 740 |
| AflIII | ACRYGT | 1 cut(s) | 166 |
| AgeI | ACCGGT | 1 cut(s) | 1268 |
| AjiI | CACGTC | 2 cut(s) | 722, 3420 |
| AjnI | CCWGG | 5 cut(s) | 906, 1305, 1992, 2617, 3409 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1459, 1491 |
| AleI | CACNNNNGTG | 1 cut(s) | 348 |
| Alw21I | GWGCWC | 4 cut(s) | 1249, 2443, 2763, 2983 |
| Alw26I | GTCTC | 1 cut(s) | 1288 |
| AlwI | GGATC | 4 cut(s) | 84, 1229, 1242, 2586 |
| AoxI | GGCC | 8 cut(s) | 197, 715, 1253, 1303, 1540, 2333, 2615, 2713 |
| ApeKI | GCWGC | 6 cut(s) | 800, 950, 1519, 1684, 2658, 2910 |
| ApoI | RAATTY | 9 cut(s) | 19, 65, 488, 613, 813, 1885, 2797, 2951, 3403 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2346, 2378 |
| AseI | ATTAAT | 2 cut(s) | 1184, 1764 |
| AsiGI | ACCGGT | 1 cut(s) | 1268 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 489 |
| AspLEI | GCGC | 2 cut(s) | 463, 2851 |
| AspS9I | GGNCC | 7 cut(s) | 247, 398, 709, 716, 1253, 1817, 2875 |
| AsuC2I | CCSGG | 2 cut(s) | 475, 1251 |
| AsuNHI | GCTAGC | 1 cut(s) | 946 |
| AvaII | GGWCC | 5 cut(s) | 247, 398, 709, 1817, 2875 |
| BaeGI | GKGCMC | 2 cut(s) | 475, 544 |
| BalI | TGGCCA | 3 cut(s) | 1305, 2617, 2715 |
| BamHI | GGATCC | 1 cut(s) | 1234 |
| BanI | GGYRCC | 3 cut(s) | 539, 1930, 2097 |
| BanII | GRGCYC | 4 cut(s) | 45, 559, 640, 2983 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2887, 2919 |
| BauI | CACGAG | 3 cut(s) | 1140, 1677, 2723 |
| BbsI | GAAGAC | 2 cut(s) | 1960, 2216 |
| Bbv12I | GWGCWC | 4 cut(s) | 1249, 2443, 2763, 2983 |
| BbvI | GCAGC | 6 cut(s) | 787, 937, 1531, 1671, 2645, 2897 |
| BccI | CCATC | 9 cut(s) | 240, 331, 1253, 1363, 2109, 2724, 2780, 3038, 3325 |
| BceAI | ACGGC | 1 cut(s) | 212 |
| BciT130I | CCWGG | 5 cut(s) | 908, 1307, 1994, 2619, 3411 |
| BciVI | GTATCC | 1 cut(s) | 914 |
| BclI | TGATCA | 3 cut(s) | 690, 850, 1399 |
| BcnI | CCSGG | 2 cut(s) | 475, 1251 |
| BcoDI | GTCTC | 1 cut(s) | 1288 |
| BfaI | CTAG | 8 cut(s) | 255, 933, 947, 1503, 2357, 3060, 3116, 3147 |
| BfmI | CTRYAG | 3 cut(s) | 315, 951, 2273 |
| BfrI | CTTAAG | 1 cut(s) | 740 |
| BfuAI | ACCTGC | 2 cut(s) | 259, 2352 |
| BfuI | GTATCC | 1 cut(s) | 914 |
| BisI | GCNGC | 8 cut(s) | 801, 951, 1520, 1543, 1685, 2659, 2911, 3159 |
| BlsI | GCNGC | 8 cut(s) | 802, 952, 1521, 1544, 1686, 2660, 2912, 3160 |
| BmcAI | AGTACT | 1 cut(s) | 1331 |
| Bme1390I | CCNGG | 7 cut(s) | 475, 908, 1251, 1307, 1994, 2619, 3411 |
| Bme18I | GGWCC | 5 cut(s) | 247, 398, 709, 1817, 2875 |
| BmgBI | CACGTC | 2 cut(s) | 722, 3420 |
| BmgT120I | GGNCC | 7 cut(s) | 247, 398, 709, 716, 1253, 1817, 2875 |
| BmiI | GGNNCC | 6 cut(s) | 541, 1236, 1254, 1932, 2099, 2163 |
| BmrFI | CCNGG | 7 cut(s) | 475, 908, 1251, 1307, 1994, 2619, 3411 |
| BmrI | ACTGGG | 2 cut(s) | 538, 1137 |
| BmsI | GCATC | 8 cut(s) | 39, 593, 619, 1309, 2092, 2822, 3016, 3370 |
| BmtI | GCTAGC | 1 cut(s) | 950 |
| BmuI | ACTGGG | 2 cut(s) | 538, 1137 |
| BpiI | GAAGAC | 2 cut(s) | 1960, 2216 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 2510, 2542, 3326, 3358 |
| BpuEI | CTTGAG | 1 cut(s) | 2115 |
| BpuMI | CCSGG | 2 cut(s) | 475, 1251 |
| Bsa29I | ATCGAT | 4 cut(s) | 1180, 2491, 2563, 2590 |
| BsaAI | YACGTR | 2 cut(s) | 902, 1028 |
| BsaBI | GATNNNNATC | 1 cut(s) | 774 |
| BsaJI | CCNNGG | 8 cut(s) | 401, 712, 861, 1250, 1641, 1810, 2866, 3281 |
| BsaWI | WCCGGW | 2 cut(s) | 1268, 3318 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 19, 49, 213, 243, 1602, 1632 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 1312, 2540, 2541, 2813, 2872, 3020, 3442 |
| Bse118I | RCCGGY | 3 cut(s) | 463, 1268, 2335 |
| Bse1I | ACTGG | 4 cut(s) | 544, 1132, 1371, 3008 |
| Bse3DI | GCAATG | 5 cut(s) | 504, 656, 1197, 2969, 3141 |
| Bse8I | GATNNNNATC | 1 cut(s) | 774 |
| BseBI | CCWGG | 5 cut(s) | 908, 1307, 1994, 2619, 3411 |
| BseCI | ATCGAT | 4 cut(s) | 1180, 2491, 2563, 2590 |
| BseDI | CCNNGG | 8 cut(s) | 401, 712, 861, 1250, 1641, 1810, 2866, 3281 |
| BseGI | GGATG | 7 cut(s) | 195, 634, 796, 1315, 2716, 2837, 3007 |
| BseJI | GATNNNNATC | 1 cut(s) | 774 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 1312, 2540, 2541, 2813, 2872, 3020, 3442 |
| BseMI | GCAATG | 5 cut(s) | 504, 656, 1197, 2969, 3141 |
| BseMII | CTCAG | 4 cut(s) | 653, 1587, 1940, 2550 |
| BseNI | ACTGG | 4 cut(s) | 544, 1132, 1371, 3008 |
| BseRI | GAGGAG | 5 cut(s) | 1815, 2421, 2465, 2945, 3003 |
| BseSI | GKGCMC | 2 cut(s) | 475, 544 |
| BseXI | GCAGC | 6 cut(s) | 787, 937, 1531, 1671, 2645, 2897 |
| BsgI | GTGCAG | 1 cut(s) | 1346 |
| BshFI | GGCC | 8 cut(s) | 199, 717, 1255, 1305, 1542, 2335, 2617, 2715 |
| BshNI | GGYRCC | 3 cut(s) | 539, 1930, 2097 |
| BshTI | ACCGGT | 1 cut(s) | 1268 |
| BshVI | ATCGAT | 4 cut(s) | 1180, 2491, 2563, 2590 |
| BsiHKAI | GWGCWC | 4 cut(s) | 1249, 2443, 2763, 2983 |
| BsiSI | CCGG | 6 cut(s) | 464, 475, 1250, 1269, 2336, 3319 |
| BslFI | GGGAC | 3 cut(s) | 971, 1133, 3440 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 1312, 2540, 2541, 2813, 2872, 3020, 3442 |
| BsmAI | GTCTC | 1 cut(s) | 1288 |
| BsmFI | GGGAC | 3 cut(s) | 971, 1133, 3440 |
| BsmI | GAATGC | 2 cut(s) | 653, 1560 |
| BsnI | GGCC | 8 cut(s) | 199, 717, 1255, 1305, 1542, 2335, 2617, 2715 |
| Bsp1286I | GDGCHC | 9 cut(s) | 45, 475, 544, 559, 640, 1249, 2443, 2763, 2983 |
| Bsp1407I | TGTACA | 2 cut(s) | 70, 2310 |
| Bsp19I | CCATGG | 1 cut(s) | 401 |
| BspACI | CCGC | 7 cut(s) | 922, 1322, 1517, 1543, 1815, 3084, 3159 |
| BspANI | GGCC | 8 cut(s) | 199, 717, 1255, 1305, 1542, 2335, 2617, 2715 |
| BspCNI | CTCAG | 4 cut(s) | 652, 1586, 1939, 2549 |
| BspDI | ATCGAT | 4 cut(s) | 1180, 2491, 2563, 2590 |
| BspHI | TCATGA | 2 cut(s) | 442, 1120 |
| BspLI | GGNNCC | 6 cut(s) | 541, 1236, 1254, 1932, 2099, 2163 |
| BspMAI | CTGCAG | 2 cut(s) | 319, 955 |
| BspMI | ACCTGC | 2 cut(s) | 259, 2352 |
| BspOI | GCTAGC | 1 cut(s) | 950 |
| BspPI | GGATC | 4 cut(s) | 84, 1229, 1242, 2586 |
| BspQI | GCTCTTC | 1 cut(s) | 3349 |
| BspT107I | GGYRCC | 3 cut(s) | 539, 1930, 2097 |
| BspTI | CTTAAG | 1 cut(s) | 740 |
| BsrDI | GCAATG | 5 cut(s) | 504, 656, 1197, 2969, 3141 |
| BsrFI | RCCGGY | 3 cut(s) | 463, 1268, 2335 |
| BsrGI | TGTACA | 2 cut(s) | 70, 2310 |
| BsrI | ACTGG | 4 cut(s) | 544, 1132, 1371, 3008 |
| BssAI | RCCGGY | 3 cut(s) | 463, 1268, 2335 |
| BssECI | CCNNGG | 8 cut(s) | 401, 712, 861, 1250, 1641, 1810, 2866, 3281 |
| BssSI | CACGAG | 3 cut(s) | 1140, 1677, 2723 |
| BssT1I | CCWWGG | 6 cut(s) | 401, 712, 861, 1641, 1810, 3281 |
| Bst2BI | CACGAG | 3 cut(s) | 1140, 1677, 2723 |
| Bst2UI | CCWGG | 5 cut(s) | 908, 1307, 1994, 2619, 3411 |
| Bst4CI | ACNGT | 5 cut(s) | 307, 347, 2277, 2315, 3243 |
| Bst6I | CTCTTC | 6 cut(s) | 559, 1015, 1915, 2502, 2533, 3349 |
| BstAFI | CTTAAG | 1 cut(s) | 740 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 323, 2832 |
| BstAUI | TGTACA | 2 cut(s) | 70, 2310 |
| BstBAI | YACGTR | 2 cut(s) | 902, 1028 |
| BstC8I | GCNNGC | 5 cut(s) | 948, 1689, 2081, 2663, 3076 |
| BstDSI | CCRYGG | 2 cut(s) | 401, 2866 |
| BstEII | GGTNACC | 1 cut(s) | 3365 |
| BstF5I | GGATG | 7 cut(s) | 195, 634, 796, 1315, 2716, 2837, 3007 |
| BstHHI | GCGC | 2 cut(s) | 463, 2851 |
| BstMAI | GTCTC | 1 cut(s) | 1288 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 323, 1853, 1949, 2410, 2832 |
| BstNI | CCWGG | 5 cut(s) | 908, 1307, 1994, 2619, 3411 |
| BstNSI | RCATGY | 4 cut(s) | 170, 1529, 2305, 2917 |
| BstPI | GGTNACC | 1 cut(s) | 3365 |
| BstSCI | CCNGG | 7 cut(s) | 473, 906, 1249, 1305, 1992, 2617, 3409 |
| BstSFI | CTRYAG | 3 cut(s) | 315, 951, 2273 |
| BstSLI | GKGCMC | 2 cut(s) | 475, 544 |
| BstSNI | TACGTA | 1 cut(s) | 902 |
| BstV1I | GCAGC | 6 cut(s) | 787, 937, 1531, 1671, 2645, 2897 |
| BstV2I | GAAGAC | 2 cut(s) | 1960, 2216 |
| BstX2I | RGATCY | 1 cut(s) | 1234 |
| BstYI | RGATCY | 1 cut(s) | 1234 |
| Bsu15I | ATCGAT | 4 cut(s) | 1180, 2491, 2563, 2590 |
| BsuI | GTATCC | 1 cut(s) | 914 |
| BsuRI | GGCC | 8 cut(s) | 199, 717, 1255, 1305, 1542, 2335, 2617, 2715 |
| BsuTUI | ATCGAT | 4 cut(s) | 1180, 2491, 2563, 2590 |
| BtgI | CCRYGG | 2 cut(s) | 401, 2866 |
| BtrI | CACGTC | 2 cut(s) | 722, 3420 |
| BtsCI | GGATG | 7 cut(s) | 195, 634, 796, 1315, 2716, 2837, 3007 |
| BtsI | GCAGTG | 2 cut(s) | 312, 2004 |
| BtsIMutI | CAGTG | 5 cut(s) | 303, 312, 1125, 2004, 3039 |
| BveI | ACCTGC | 2 cut(s) | 259, 2352 |
| Cac8I | GCNNGC | 5 cut(s) | 948, 1689, 2081, 2663, 3076 |
| CciI | TCATGA | 2 cut(s) | 442, 1120 |
| CfoI | GCGC | 2 cut(s) | 463, 2851 |
| Cfr10I | RCCGGY | 3 cut(s) | 463, 1268, 2335 |
| Cfr13I | GGNCC | 7 cut(s) | 247, 398, 709, 716, 1253, 1817, 2875 |
| ClaI | ATCGAT | 4 cut(s) | 1180, 2491, 2563, 2590 |
| CsiI | ACCWGGT | 1 cut(s) | 3409 |
| Csp6I | GTAC | 7 cut(s) | 71, 164, 258, 995, 1330, 1923, 2311 |
| CspAI | ACCGGT | 1 cut(s) | 1268 |
| CviQI | GTAC | 7 cut(s) | 71, 164, 258, 995, 1330, 1923, 2311 |
| EaeI | YGGCCR | 4 cut(s) | 1303, 2333, 2615, 2713 |
| Eam1104I | CTCTTC | 6 cut(s) | 559, 1015, 1915, 2502, 2533, 3349 |
| EarI | CTCTTC | 6 cut(s) | 559, 1015, 1915, 2502, 2533, 3349 |
| Ecl136II | GAGCTC | 1 cut(s) | 2981 |
| Eco105I | TACGTA | 1 cut(s) | 902 |
| Eco130I | CCWWGG | 6 cut(s) | 401, 712, 861, 1641, 1810, 3281 |
| Eco24I | GRGCYC | 4 cut(s) | 45, 559, 640, 2983 |
| Eco47I | GGWCC | 5 cut(s) | 247, 398, 709, 1817, 2875 |
| Eco53kI | GAGCTC | 1 cut(s) | 2981 |
| Eco57I | CTGAAG | 2 cut(s) | 819, 1185 |
| Eco91I | GGTNACC | 1 cut(s) | 3365 |
| EcoICRI | GAGCTC | 1 cut(s) | 2981 |
| EcoO109I | RGGNCCY | 2 cut(s) | 247, 709 |
| EcoO65I | GGTNACC | 1 cut(s) | 3365 |
| EcoRI | GAATTC | 1 cut(s) | 1885 |
| EcoRII | CCWGG | 5 cut(s) | 906, 1305, 1992, 2617, 3409 |
| EcoT14I | CCWWGG | 6 cut(s) | 401, 712, 861, 1641, 1810, 3281 |
| EcoT38I | GRGCYC | 4 cut(s) | 45, 559, 640, 2983 |
| ErhI | CCWWGG | 6 cut(s) | 401, 712, 861, 1641, 1810, 3281 |
| FaqI | GGGAC | 3 cut(s) | 971, 1133, 3440 |
| FauI | CCCGC | 3 cut(s) | 915, 1524, 3077 |
| FbaI | TGATCA | 3 cut(s) | 690, 850, 1399 |
| FblI | GTMKAC | 2 cut(s) | 2112, 2353 |
| Fnu4HI | GCNGC | 8 cut(s) | 801, 951, 1520, 1543, 1685, 2659, 2911, 3159 |
| FokI | GGATG | 7 cut(s) | 202, 641, 803, 1322, 2703, 2844, 2994 |
| FriOI | GRGCYC | 4 cut(s) | 45, 559, 640, 2983 |
| Fsp4HI | GCNGC | 8 cut(s) | 801, 951, 1520, 1543, 1685, 2659, 2911, 3159 |
| FspBI | CTAG | 8 cut(s) | 255, 933, 947, 1503, 2357, 3060, 3116, 3147 |
| GlaI | GCGC | 2 cut(s) | 462, 2850 |
| GluI | GCNGC | 8 cut(s) | 801, 951, 1520, 1543, 1685, 2659, 2911, 3159 |
| HaeIII | GGCC | 8 cut(s) | 199, 717, 1255, 1305, 1542, 2335, 2617, 2715 |
| HapII | CCGG | 6 cut(s) | 464, 475, 1250, 1269, 2336, 3319 |
| HhaI | GCGC | 2 cut(s) | 463, 2851 |
| Hin6I | GCGC | 2 cut(s) | 461, 2849 |
| HinP1I | GCGC | 2 cut(s) | 461, 2849 |
| HincII | GTYRAC | 6 cut(s) | 221, 2212, 2341, 2354, 2821, 3001 |
| HindII | GTYRAC | 6 cut(s) | 221, 2212, 2341, 2354, 2821, 3001 |
| HindIII | AAGCTT | 1 cut(s) | 1854 |
| HpaI | GTTAAC | 1 cut(s) | 3001 |
| HpaII | CCGG | 6 cut(s) | 464, 475, 1250, 1269, 2336, 3319 |
| Hpy99I | CGWCG | 3 cut(s) | 351, 2355, 2979 |
| HpyCH4III | ACNGT | 5 cut(s) | 307, 347, 2277, 2315, 3243 |
| HpyCH4IV | ACGT | 7 cut(s) | 223, 721, 901, 940, 1027, 2603, 3419 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 323, 1853, 1949, 2410, 2832 |
| HpySE526I | ACGT | 7 cut(s) | 223, 721, 901, 940, 1027, 2603, 3419 |
| HspAI | GCGC | 2 cut(s) | 461, 2849 |
| Ksp22I | TGATCA | 3 cut(s) | 690, 850, 1399 |
| KspAI | GTTAAC | 1 cut(s) | 3001 |
| LguI | GCTCTTC | 1 cut(s) | 3349 |
| LmnI | GCTCC | 8 cut(s) | 27, 586, 1252, 2146, 2446, 2758, 2932, 2986 |
| Lsp1109I | GCAGC | 6 cut(s) | 787, 937, 1531, 1671, 2645, 2897 |
| LweI | GCATC | 8 cut(s) | 39, 593, 619, 1309, 2092, 2822, 3016, 3370 |
| MabI | ACCWGGT | 1 cut(s) | 3409 |
| MaeI | CTAG | 8 cut(s) | 255, 933, 947, 1503, 2357, 3060, 3116, 3147 |
| MaeII | ACGT | 7 cut(s) | 223, 721, 901, 940, 1027, 2603, 3419 |
| MaeIII | GTNAC | 9 cut(s) | 192, 1023, 1159, 1271, 1604, 1714, 1896, 2061, 3365 |
| MfeI | CAATTG | 1 cut(s) | 1431 |
| MflI | RGATCY | 1 cut(s) | 1234 |
| MhlI | GDGCHC | 9 cut(s) | 45, 475, 544, 559, 640, 1249, 2443, 2763, 2983 |
| MlsI | TGGCCA | 3 cut(s) | 1305, 2617, 2715 |
| MluNI | TGGCCA | 3 cut(s) | 1305, 2617, 2715 |
| MlyI | GAGTC | 2 cut(s) | 1045, 2589 |
| MmeI | TCCRAC | 4 cut(s) | 606, 1572, 2219, 3207 |
| Mox20I | TGGCCA | 3 cut(s) | 1305, 2617, 2715 |
| MroXI | GAANNNNTTC | 1 cut(s) | 489 |
| MscI | TGGCCA | 3 cut(s) | 1305, 2617, 2715 |
| MslI | CAYNNNNRTG | 2 cut(s) | 348, 2306 |
| Msp20I | TGGCCA | 3 cut(s) | 1305, 2617, 2715 |
| MspA1I | CMGCKG | 1 cut(s) | 3161 |
| MspCI | CTTAAG | 1 cut(s) | 740 |
| MspI | CCGG | 6 cut(s) | 464, 475, 1250, 1269, 2336, 3319 |
| MspR9I | CCNGG | 7 cut(s) | 475, 908, 1251, 1307, 1994, 2619, 3411 |
| MunI | CAATTG | 1 cut(s) | 1431 |
| Mva1269I | GAATGC | 2 cut(s) | 653, 1560 |
| MvaI | CCWGG | 5 cut(s) | 908, 1307, 1994, 2619, 3411 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 323, 1853, 1949, 2410, 2832 |
| NciI | CCSGG | 2 cut(s) | 475, 1251 |
| NcoI | CCATGG | 1 cut(s) | 401 |
| NheI | GCTAGC | 1 cut(s) | 946 |
| NlaIV | GGNNCC | 6 cut(s) | 541, 1236, 1254, 1932, 2099, 2163 |
| NmuCI | GTSAC | 4 cut(s) | 192, 1271, 1714, 2061 |
| NspI | RCATGY | 4 cut(s) | 170, 1529, 2305, 2917 |
| OliI | CACNNNNGTG | 1 cut(s) | 348 |
| PagI | TCATGA | 2 cut(s) | 442, 1120 |
| PciI | ACATGT | 1 cut(s) | 166 |
| PciSI | GCTCTTC | 1 cut(s) | 3349 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 1684, 2983 |
| PctI | GAATGC | 2 cut(s) | 653, 1560 |
| PdmI | GAANNNNTTC | 1 cut(s) | 489 |
| PfeI | GAWTC | 8 cut(s) | 293, 1058, 1506, 2218, 2565, 3236, 3440, 3492 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1312 |
| PfoI | TCCNGGA | 1 cut(s) | 906 |
| PinAI | ACCGGT | 1 cut(s) | 1268 |
| PkrI | GCNGC | 8 cut(s) | 802, 952, 1521, 1544, 1686, 2660, 2912, 3160 |
| PleI | GAGTC | 2 cut(s) | 1044, 2588 |
| PpsI | GAGTC | 2 cut(s) | 1044, 2588 |
| Ppu21I | YACGTR | 2 cut(s) | 902, 1028 |
| PpuMI | RGGWCCY | 2 cut(s) | 247, 709 |
| PscI | ACATGT | 1 cut(s) | 166 |
| PshBI | ATTAAT | 2 cut(s) | 1184, 1764 |
| Psp124BI | GAGCTC | 1 cut(s) | 2983 |
| Psp1406I | AACGTT | 2 cut(s) | 223, 940 |
| Psp5II | RGGWCCY | 2 cut(s) | 247, 709 |
| Psp6I | CCWGG | 5 cut(s) | 906, 1305, 1992, 2617, 3409 |
| PspEI | GGTNACC | 1 cut(s) | 3365 |
| PspGI | CCWGG | 5 cut(s) | 906, 1305, 1992, 2617, 3409 |
| PspN4I | GGNNCC | 6 cut(s) | 541, 1236, 1254, 1932, 2099, 2163 |
| PspPI | GGNCC | 7 cut(s) | 247, 398, 709, 716, 1253, 1817, 2875 |
| PspPPI | RGGWCCY | 2 cut(s) | 247, 709 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 3299, 3331 |
| PstI | CTGCAG | 2 cut(s) | 319, 955 |
| PsuI | RGATCY | 1 cut(s) | 1234 |
| RsaI | GTAC | 7 cut(s) | 72, 165, 259, 996, 1331, 1924, 2312 |
| RsaNI | GTAC | 7 cut(s) | 71, 164, 258, 995, 1330, 1923, 2311 |
| RseI | CAYNNNNRTG | 2 cut(s) | 348, 2306 |
| SacI | GAGCTC | 1 cut(s) | 2983 |
| SalI | GTCGAC | 1 cut(s) | 2352 |
| SapI | GCTCTTC | 1 cut(s) | 3349 |
| SatI | GCNGC | 8 cut(s) | 801, 951, 1520, 1543, 1685, 2659, 2911, 3159 |
| Sau96I | GGNCC | 7 cut(s) | 247, 398, 709, 716, 1253, 1817, 2875 |
| ScaI | AGTACT | 1 cut(s) | 1331 |
| SchI | GAGTC | 2 cut(s) | 1045, 2589 |
| ScrFI | CCNGG | 7 cut(s) | 475, 908, 1251, 1307, 1994, 2619, 3411 |
| SduI | GDGCHC | 9 cut(s) | 45, 475, 544, 559, 640, 1249, 2443, 2763, 2983 |
| SexAI | ACCWGGT | 1 cut(s) | 3409 |
| SfaNI | GCATC | 8 cut(s) | 39, 593, 619, 1309, 2092, 2822, 3016, 3370 |
| SfcI | CTRYAG | 3 cut(s) | 315, 951, 2273 |
| SinI | GGWCC | 5 cut(s) | 247, 398, 709, 1817, 2875 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 348, 2306 |
| SmlI | CTYRAG | 2 cut(s) | 740, 2130 |
| SmoI | CTYRAG | 2 cut(s) | 740, 2130 |
| SnaBI | TACGTA | 1 cut(s) | 902 |
| SsiI | CCGC | 7 cut(s) | 922, 1322, 1517, 1543, 1815, 3084, 3159 |
| SspI | AATATT | 3 cut(s) | 205, 1549, 2169 |
| SspMI | CTAG | 8 cut(s) | 255, 933, 947, 1503, 2357, 3060, 3116, 3147 |
| SstI | GAGCTC | 1 cut(s) | 2983 |
| StyD4I | CCNGG | 7 cut(s) | 473, 906, 1249, 1305, 1992, 2617, 3409 |
| StyI | CCWWGG | 6 cut(s) | 401, 712, 861, 1641, 1810, 3281 |
| TaaI | ACNGT | 5 cut(s) | 307, 347, 2277, 2315, 3243 |
| TaiI | ACGT | 7 cut(s) | 226, 724, 904, 943, 1030, 2606, 3422 |
| TaqI | TCGA | 8 cut(s) | 778, 1180, 2353, 2491, 2563, 2590, 2977, 3490 |
| TatI | WGTACW | 5 cut(s) | 70, 163, 257, 1329, 2310 |
| TauI | GCSGC | 2 cut(s) | 1545, 3161 |
| TfiI | GAWTC | 8 cut(s) | 293, 1058, 1506, 2218, 2565, 3236, 3440, 3492 |
| TscAI | CASTG | 5 cut(s) | 310, 319, 1132, 2004, 3046 |
| TseFI | GTSAC | 4 cut(s) | 192, 1271, 1714, 2061 |
| TseI | GCWGC | 6 cut(s) | 800, 950, 1519, 1684, 2658, 2910 |
| Tsp45I | GTSAC | 4 cut(s) | 192, 1271, 1714, 2061 |
| TspGWI | ACGGA | 4 cut(s) | 40, 905, 1623, 2592 |
| TspRI | CASTG | 5 cut(s) | 310, 319, 1132, 2004, 3046 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1312 |
| Vha464I | CTTAAG | 1 cut(s) | 740 |
| VpaK11BI | GGWCC | 5 cut(s) | 247, 398, 709, 1817, 2875 |
| VspI | ATTAAT | 2 cut(s) | 1184, 1764 |
| XapI | RAATTY | 9 cut(s) | 19, 65, 488, 613, 813, 1885, 2797, 2951, 3403 |
| XbaI | TCTAGA | 2 cut(s) | 932, 1502 |
| XceI | RCATGY | 4 cut(s) | 170, 1529, 2305, 2917 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 141, 3417 |
| XmiI | GTMKAC | 2 cut(s) | 2112, 2353 |
| XmnI | GAANNNNTTC | 1 cut(s) | 489 |
| XspI | CTAG | 8 cut(s) | 255, 933, 947, 1503, 2357, 3060, 3116, 3147 |
| ZrmI | AGTACT | 1 cut(s) | 1331 |