ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 312 |
| AccII | CGCG | 1 cut(s) | 327 |
| AciI | CCGC | 4 cut(s) | 894, 1002, 1070, 1249 |
| AclWI | GGATC | 5 cut(s) | 179, 254, 339, 1152, 1165 |
| AcoI | YGGCCR | 3 cut(s) | 430, 619, 1071 |
| AcsI | RAATTY | 2 cut(s) | 543, 952 |
| AcuI | CTGAAG | 1 cut(s) | 500 |
| AfaI | GTAC | 3 cut(s) | 944, 995, 1376 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 158, 195, 225, 520, 714, 1022 |
| AgsI | TTSAA | 4 cut(s) | 308, 638, 1053, 1148 |
| AjnI | CCWGG | 1 cut(s) | 1210 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 899, 931 |
| AloI | GAACNNNNNNTCC | 3 cut(s) | 35, 996, 1028 |
| Alw21I | GWGCWC | 4 cut(s) | 355, 697, 1126, 1413 |
| Alw26I | GTCTC | 3 cut(s) | 536, 907, 1376 |
| AlwI | GGATC | 5 cut(s) | 179, 254, 339, 1152, 1165 |
| AoxI | GGCC | 5 cut(s) | 35, 430, 619, 705, 1071 |
| ApeKI | GCWGC | 4 cut(s) | 280, 1183, 1265, 1268 |
| ApoI | RAATTY | 2 cut(s) | 543, 952 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 513, 593 |
| AspLEI | GCGC | 2 cut(s) | 71, 327 |
| AspS9I | GGNCC | 1 cut(s) | 36 |
| AsuC2I | CCSGG | 1 cut(s) | 292 |
| AsuHPI | GGTGA | 5 cut(s) | 241, 286, 398, 1208, 1216 |
| BaeGI | GKGCMC | 1 cut(s) | 340 |
| BalI | TGGCCA | 1 cut(s) | 432 |
| BamHI | GGATCC | 1 cut(s) | 1157 |
| BanII | GRGCYC | 1 cut(s) | 1413 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 89, 121 |
| Bbv12I | GWGCWC | 4 cut(s) | 355, 697, 1126, 1413 |
| BbvI | GCAGC | 4 cut(s) | 292, 1195, 1252, 1280 |
| BccI | CCATC | 5 cut(s) | 461, 617, 669, 887, 1370 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 317, 351 |
| BciT130I | CCWGG | 1 cut(s) | 1212 |
| BciVI | GTATCC | 1 cut(s) | 380 |
| BcnI | CCSGG | 1 cut(s) | 292 |
| BcoDI | GTCTC | 3 cut(s) | 536, 907, 1376 |
| BfaI | CTAG | 1 cut(s) | 1028 |
| BfmI | CTRYAG | 1 cut(s) | 1266 |
| BfoI | RGCGCY | 1 cut(s) | 72 |
| BfuI | GTATCC | 1 cut(s) | 380 |
| BisI | GCNGC | 5 cut(s) | 281, 1071, 1184, 1266, 1269 |
| BlpI | GCTNAGC | 1 cut(s) | 1057 |
| BlsI | GCNGC | 5 cut(s) | 282, 1072, 1185, 1267, 1270 |
| BmcAI | AGTACT | 2 cut(s) | 995, 1376 |
| Bme1390I | CCNGG | 2 cut(s) | 292, 1212 |
| BmgT120I | GGNCC | 1 cut(s) | 36 |
| BmiI | GGNNCC | 2 cut(s) | 791, 1159 |
| BmrFI | CCNGG | 2 cut(s) | 292, 1212 |
| BmrI | ACTGGG | 1 cut(s) | 919 |
| BmsI | GCATC | 3 cut(s) | 189, 267, 1197 |
| BmuI | ACTGGG | 1 cut(s) | 919 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1057 |
| BpuEI | CTTGAG | 1 cut(s) | 1172 |
| BpuMI | CCSGG | 1 cut(s) | 292 |
| BsaI | GGTCTC | 2 cut(s) | 536, 1376 |
| BsaJI | CCNNGG | 5 cut(s) | 174, 622, 784, 826, 1167 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 905, 931, 935, 961 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 158, 195, 225, 520, 714, 1022 |
| Bse118I | RCCGGY | 1 cut(s) | 714 |
| Bse1I | ACTGG | 2 cut(s) | 925, 1404 |
| Bse3DI | GCAATG | 1 cut(s) | 555 |
| BseBI | CCWGG | 1 cut(s) | 1212 |
| BseDI | CCNNGG | 5 cut(s) | 174, 622, 784, 826, 1167 |
| BseGI | GGATG | 6 cut(s) | 204, 453, 465, 511, 866, 1177 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 158, 195, 225, 520, 714, 1022 |
| BseMI | GCAATG | 1 cut(s) | 555 |
| BseMII | CTCAG | 3 cut(s) | 621, 981, 1011 |
| BseNI | ACTGG | 2 cut(s) | 925, 1404 |
| BseRI | GAGGAG | 1 cut(s) | 639 |
| BseSI | GKGCMC | 1 cut(s) | 340 |
| BseXI | GCAGC | 4 cut(s) | 292, 1195, 1252, 1280 |
| BsgI | GTGCAG | 2 cut(s) | 160, 1029 |
| Bsh1236I | CGCG | 1 cut(s) | 327 |
| BshFI | GGCC | 5 cut(s) | 37, 432, 621, 707, 1073 |
| BsiHKAI | GWGCWC | 4 cut(s) | 355, 697, 1126, 1413 |
| BsiSI | CCGG | 3 cut(s) | 56, 291, 715 |
| BslFI | GGGAC | 2 cut(s) | 68, 241 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 158, 195, 225, 520, 714, 1022 |
| BsmAI | GTCTC | 3 cut(s) | 536, 907, 1376 |
| BsmFI | GGGAC | 2 cut(s) | 68, 241 |
| BsmI | GAATGC | 2 cut(s) | 162, 826 |
| BsnI | GGCC | 5 cut(s) | 37, 432, 621, 707, 1073 |
| Bso31I | GGTCTC | 2 cut(s) | 536, 1376 |
| Bsp1286I | GDGCHC | 5 cut(s) | 340, 355, 697, 1126, 1413 |
| Bsp143I | GATC | 6 cut(s) | 184, 246, 331, 759, 812, 1157 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1057 |
| BspACI | CCGC | 4 cut(s) | 894, 1002, 1070, 1249 |
| BspANI | GGCC | 5 cut(s) | 37, 432, 621, 707, 1073 |
| BspCNI | CTCAG | 3 cut(s) | 622, 982, 1010 |
| BspFNI | CGCG | 1 cut(s) | 327 |
| BspLI | GGNNCC | 2 cut(s) | 791, 1159 |
| BspMAI | CTGCAG | 1 cut(s) | 1270 |
| BspPI | GGATC | 5 cut(s) | 179, 254, 339, 1152, 1165 |
| BspQI | GCTCTTC | 1 cut(s) | 128 |
| BspTNI | GGTCTC | 2 cut(s) | 536, 1376 |
| BsrDI | GCAATG | 1 cut(s) | 555 |
| BsrFI | RCCGGY | 1 cut(s) | 714 |
| BsrI | ACTGG | 2 cut(s) | 925, 1404 |
| BssAI | RCCGGY | 1 cut(s) | 714 |
| BssECI | CCNNGG | 5 cut(s) | 174, 622, 784, 826, 1167 |
| BssMI | GATC | 6 cut(s) | 184, 246, 331, 759, 812, 1157 |
| BssT1I | CCWWGG | 2 cut(s) | 784, 1167 |
| Bst2UI | CCWGG | 1 cut(s) | 1212 |
| Bst4CI | ACNGT | 7 cut(s) | 112, 232, 617, 754, 947, 1220, 1303 |
| Bst6I | CTCTTC | 2 cut(s) | 128, 1097 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 650 |
| BstC8I | GCNNGC | 3 cut(s) | 484, 747, 1353 |
| BstDEI | CTNAG | 4 cut(s) | 630, 990, 997, 1057 |
| BstDSI | CCRYGG | 2 cut(s) | 174, 826 |
| BstEII | GGTNACC | 1 cut(s) | 1214 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 518 |
| BstF5I | GGATG | 6 cut(s) | 204, 453, 465, 511, 866, 1177 |
| BstFNI | CGCG | 1 cut(s) | 327 |
| BstH2I | RGCGCY | 1 cut(s) | 72 |
| BstHHI | GCGC | 2 cut(s) | 71, 327 |
| BstKTI | GATC | 6 cut(s) | 187, 249, 334, 762, 815, 1160 |
| BstMAI | GTCTC | 3 cut(s) | 536, 907, 1376 |
| BstMBI | GATC | 6 cut(s) | 184, 246, 331, 759, 812, 1157 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 277, 483, 650, 1067, 1240 |
| BstNI | CCWGG | 1 cut(s) | 1212 |
| BstNSI | RCATGY | 4 cut(s) | 418, 877, 1122, 1285 |
| BstPI | GGTNACC | 1 cut(s) | 1214 |
| BstSCI | CCNGG | 2 cut(s) | 290, 1210 |
| BstSFI | CTRYAG | 1 cut(s) | 1266 |
| BstSLI | GKGCMC | 1 cut(s) | 340 |
| BstUI | CGCG | 1 cut(s) | 327 |
| BstV1I | GCAGC | 4 cut(s) | 292, 1195, 1252, 1280 |
| BstX2I | RGATCY | 2 cut(s) | 184, 1157 |
| BstYI | RGATCY | 2 cut(s) | 184, 1157 |
| BsuI | GTATCC | 1 cut(s) | 380 |
| BsuRI | GGCC | 5 cut(s) | 37, 432, 621, 707, 1073 |
| BtgI | CCRYGG | 2 cut(s) | 174, 826 |
| BtsCI | GGATG | 6 cut(s) | 204, 453, 465, 511, 866, 1177 |
| BtsI | GCAGTG | 2 cut(s) | 1041, 1362 |
| BtsIMutI | CAGTG | 6 cut(s) | 108, 622, 952, 1041, 1362, 1411 |
| Cac8I | GCNNGC | 3 cut(s) | 484, 747, 1353 |
| CfoI | GCGC | 2 cut(s) | 71, 327 |
| Cfr10I | RCCGGY | 1 cut(s) | 714 |
| Cfr13I | GGNCC | 1 cut(s) | 36 |
| Csp6I | GTAC | 3 cut(s) | 943, 994, 1375 |
| CviAII | CATG | 7 cut(s) | 235, 415, 874, 1119, 1140, 1282, 1318 |
| CviQI | GTAC | 3 cut(s) | 943, 994, 1375 |
| DdeI | CTNAG | 4 cut(s) | 630, 990, 997, 1057 |
| DpnI | GATC | 6 cut(s) | 186, 248, 333, 761, 814, 1159 |
| DpnII | GATC | 6 cut(s) | 184, 246, 331, 759, 812, 1157 |
| EaeI | YGGCCR | 3 cut(s) | 430, 619, 1071 |
| Eam1104I | CTCTTC | 2 cut(s) | 128, 1097 |
| EarI | CTCTTC | 2 cut(s) | 128, 1097 |
| EciI | GGCGGA | 1 cut(s) | 1017 |
| Ecl136II | GAGCTC | 1 cut(s) | 1411 |
| Eco130I | CCWWGG | 2 cut(s) | 784, 1167 |
| Eco147I | AGGCCT | 1 cut(s) | 707 |
| Eco24I | GRGCYC | 1 cut(s) | 1413 |
| Eco31I | GGTCTC | 2 cut(s) | 536, 1376 |
| Eco53kI | GAGCTC | 1 cut(s) | 1411 |
| Eco57I | CTGAAG | 1 cut(s) | 500 |
| Eco91I | GGTNACC | 1 cut(s) | 1214 |
| EcoICRI | GAGCTC | 1 cut(s) | 1411 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 518 |
| EcoO109I | RGGNCCY | 1 cut(s) | 36 |
| EcoO65I | GGTNACC | 1 cut(s) | 1214 |
| EcoRII | CCWGG | 1 cut(s) | 1210 |
| EcoT14I | CCWWGG | 2 cut(s) | 784, 1167 |
| EcoT38I | GRGCYC | 1 cut(s) | 1413 |
| ErhI | CCWWGG | 2 cut(s) | 784, 1167 |
| FaeI | CATG | 7 cut(s) | 238, 418, 877, 1122, 1143, 1285, 1321 |
| FaqI | GGGAC | 2 cut(s) | 68, 241 |
| FatI | CATG | 7 cut(s) | 234, 414, 873, 1118, 1139, 1281, 1317 |
| FblI | GTMKAC | 1 cut(s) | 312 |
| Fnu4HI | GCNGC | 5 cut(s) | 281, 1071, 1184, 1266, 1269 |
| FokI | GGATG | 6 cut(s) | 211, 440, 452, 518, 853, 1184 |
| FriOI | GRGCYC | 1 cut(s) | 1413 |
| Fsp4HI | GCNGC | 5 cut(s) | 281, 1071, 1184, 1266, 1269 |
| FspBI | CTAG | 1 cut(s) | 1028 |
| GlaI | GCGC | 2 cut(s) | 70, 326 |
| GluI | GCNGC | 5 cut(s) | 281, 1071, 1184, 1266, 1269 |
| HaeII | RGCGCY | 1 cut(s) | 72 |
| HaeIII | GGCC | 5 cut(s) | 37, 432, 621, 707, 1073 |
| HapII | CCGG | 3 cut(s) | 56, 291, 715 |
| HhaI | GCGC | 2 cut(s) | 71, 327 |
| Hin1II | CATG | 7 cut(s) | 238, 418, 877, 1122, 1143, 1285, 1321 |
| Hin6I | GCGC | 2 cut(s) | 69, 325 |
| HinP1I | GCGC | 2 cut(s) | 69, 325 |
| HincII | GTYRAC | 1 cut(s) | 313 |
| HindII | GTYRAC | 1 cut(s) | 313 |
| HindIII | AAGCTT | 1 cut(s) | 1054 |
| HinfI | GANTC | 5 cut(s) | 721, 964, 986, 1223, 1344 |
| HpaII | CCGG | 3 cut(s) | 56, 291, 715 |
| HphI | GGTGA | 5 cut(s) | 241, 286, 398, 1208, 1216 |
| Hpy166II | GTNNAC | 2 cut(s) | 313, 830 |
| Hpy188I | TCNGA | 7 cut(s) | 66, 92, 440, 519, 812, 991, 1277 |
| Hpy188III | TCNNGA | 8 cut(s) | 373, 540, 586, 701, 757, 1155, 1335, 1390 |
| Hpy8I | GTNNAC | 2 cut(s) | 313, 830 |
| HpyCH4III | ACNGT | 7 cut(s) | 112, 232, 617, 754, 947, 1220, 1303 |
| HpyCH4IV | ACGT | 1 cut(s) | 732 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 277, 483, 650, 1067, 1240 |
| HpyF3I | CTNAG | 4 cut(s) | 630, 990, 997, 1057 |
| HpySE526I | ACGT | 1 cut(s) | 732 |
| Hsp92II | CATG | 7 cut(s) | 238, 418, 877, 1122, 1143, 1285, 1321 |
| HspAI | GCGC | 2 cut(s) | 69, 325 |
| Kzo9I | GATC | 6 cut(s) | 184, 246, 331, 759, 812, 1157 |
| LguI | GCTCTTC | 1 cut(s) | 128 |
| LmnI | GCTCC | 8 cut(s) | 153, 179, 238, 288, 350, 626, 641, 1240 |
| Lsp1109I | GCAGC | 4 cut(s) | 292, 1195, 1252, 1280 |
| LweI | GCATC | 3 cut(s) | 189, 267, 1197 |
| MaeI | CTAG | 1 cut(s) | 1028 |
| MaeII | ACGT | 1 cut(s) | 732 |
| MaeIII | GTNAC | 4 cut(s) | 259, 733, 1214, 1357 |
| MalI | GATC | 6 cut(s) | 186, 248, 333, 761, 814, 1159 |
| MboI | GATC | 6 cut(s) | 184, 246, 331, 759, 812, 1157 |
| MboII | GAAGA | 5 cut(s) | 14, 115, 716, 754, 1084 |
| MfeI | CAATTG | 2 cut(s) | 255, 1326 |
| MflI | RGATCY | 2 cut(s) | 184, 1157 |
| MhlI | GDGCHC | 5 cut(s) | 340, 355, 697, 1126, 1413 |
| MlsI | TGGCCA | 1 cut(s) | 432 |
| MluCI | AATT | 5 cut(s) | 255, 543, 952, 1007, 1326 |
| MluNI | TGGCCA | 1 cut(s) | 432 |
| MlyI | GAGTC | 1 cut(s) | 1232 |
| MmeI | TCCRAC | 3 cut(s) | 424, 894, 930 |
| Mox20I | TGGCCA | 1 cut(s) | 432 |
| MroXI | GAANNNNTTC | 2 cut(s) | 513, 593 |
| MscI | TGGCCA | 1 cut(s) | 432 |
| MslI | CAYNNNNRTG | 1 cut(s) | 491 |
| Msp20I | TGGCCA | 1 cut(s) | 432 |
| MspA1I | CMGCKG | 1 cut(s) | 1265 |
| MspI | CCGG | 3 cut(s) | 56, 291, 715 |
| MspR9I | CCNGG | 2 cut(s) | 292, 1212 |
| MunI | CAATTG | 2 cut(s) | 255, 1326 |
| Mva1269I | GAATGC | 2 cut(s) | 162, 826 |
| MvaI | CCWGG | 1 cut(s) | 1212 |
| MvnI | CGCG | 1 cut(s) | 327 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 277, 483, 650, 1067, 1240 |
| NciI | CCSGG | 1 cut(s) | 292 |
| NdeII | GATC | 6 cut(s) | 184, 246, 331, 759, 812, 1157 |
| NlaIII | CATG | 7 cut(s) | 238, 418, 877, 1122, 1143, 1285, 1321 |
| NlaIV | GGNNCC | 2 cut(s) | 791, 1159 |
| NmeAIII | GCCGAG | 2 cut(s) | 513, 647 |
| NmuCI | GTSAC | 4 cut(s) | 259, 733, 1214, 1357 |
| NspI | RCATGY | 4 cut(s) | 418, 877, 1122, 1285 |
| PceI | AGGCCT | 1 cut(s) | 707 |
| PciSI | GCTCTTC | 1 cut(s) | 128 |
| PctI | GAATGC | 2 cut(s) | 162, 826 |
| PdmI | GAANNNNTTC | 2 cut(s) | 513, 593 |
| PfeI | GAWTC | 4 cut(s) | 721, 964, 986, 1344 |
| PkrI | GCNGC | 5 cut(s) | 282, 1072, 1185, 1267, 1270 |
| PleI | GAGTC | 1 cut(s) | 1231 |
| PpsI | GAGTC | 1 cut(s) | 1231 |
| Psp124BI | GAGCTC | 1 cut(s) | 1413 |
| Psp6I | CCWGG | 1 cut(s) | 1210 |
| PspEI | GGTNACC | 1 cut(s) | 1214 |
| PspGI | CCWGG | 1 cut(s) | 1210 |
| PspN4I | GGNNCC | 2 cut(s) | 791, 1159 |
| PspPI | GGNCC | 1 cut(s) | 36 |
| PstI | CTGCAG | 1 cut(s) | 1270 |
| PsuI | RGATCY | 2 cut(s) | 184, 1157 |
| PvuII | CAGCTG | 1 cut(s) | 1265 |
| RsaI | GTAC | 3 cut(s) | 944, 995, 1376 |
| RsaNI | GTAC | 3 cut(s) | 943, 994, 1375 |
| RseI | CAYNNNNRTG | 1 cut(s) | 491 |
| SacI | GAGCTC | 1 cut(s) | 1413 |
| SalI | GTCGAC | 1 cut(s) | 311 |
| SapI | GCTCTTC | 1 cut(s) | 128 |
| SatI | GCNGC | 5 cut(s) | 281, 1071, 1184, 1266, 1269 |
| Sau3AI | GATC | 6 cut(s) | 184, 246, 331, 759, 812, 1157 |
| Sau96I | GGNCC | 1 cut(s) | 36 |
| ScaI | AGTACT | 2 cut(s) | 995, 1376 |
| SchI | GAGTC | 1 cut(s) | 1232 |
| ScrFI | CCNGG | 2 cut(s) | 292, 1212 |
| SduI | GDGCHC | 5 cut(s) | 340, 355, 697, 1126, 1413 |
| SfaNI | GCATC | 3 cut(s) | 189, 267, 1197 |
| SfcI | CTRYAG | 1 cut(s) | 1266 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 491 |
| SmlI | CTYRAG | 1 cut(s) | 1187 |
| SmoI | CTYRAG | 1 cut(s) | 1187 |
| Sse9I | AATT | 5 cut(s) | 255, 543, 952, 1007, 1326 |
| SseBI | AGGCCT | 1 cut(s) | 707 |
| SsiI | CCGC | 4 cut(s) | 894, 1002, 1070, 1249 |
| SspMI | CTAG | 1 cut(s) | 1028 |
| SstI | GAGCTC | 1 cut(s) | 1413 |
| StuI | AGGCCT | 1 cut(s) | 707 |
| StyD4I | CCNGG | 2 cut(s) | 290, 1210 |
| StyI | CCWWGG | 2 cut(s) | 784, 1167 |
| TaaI | ACNGT | 7 cut(s) | 112, 232, 617, 754, 947, 1220, 1303 |
| TaiI | ACGT | 1 cut(s) | 735 |
| TaqI | TCGA | 4 cut(s) | 312, 676, 691, 1389 |
| TasI | AATT | 5 cut(s) | 255, 543, 952, 1007, 1326 |
| TatI | WGTACW | 2 cut(s) | 993, 1374 |
| TauI | GCSGC | 1 cut(s) | 1073 |
| TfiI | GAWTC | 4 cut(s) | 721, 964, 986, 1344 |
| TscAI | CASTG | 6 cut(s) | 115, 622, 952, 1048, 1362, 1411 |
| TseFI | GTSAC | 4 cut(s) | 259, 733, 1214, 1357 |
| TseI | GCWGC | 4 cut(s) | 280, 1183, 1265, 1268 |
| Tsp45I | GTSAC | 4 cut(s) | 259, 733, 1214, 1357 |
| TspDTI | ATGAA | 6 cut(s) | 14, 115, 522, 544, 907, 1306 |
| TspGWI | ACGGA | 1 cut(s) | 782 |
| TspRI | CASTG | 6 cut(s) | 115, 622, 952, 1048, 1362, 1411 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 518 |
| XapI | RAATTY | 2 cut(s) | 543, 952 |
| XceI | RCATGY | 4 cut(s) | 418, 877, 1122, 1285 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 440 |
| XmiI | GTMKAC | 1 cut(s) | 312 |
| XmnI | GAANNNNTTC | 2 cut(s) | 513, 593 |
| XspI | CTAG | 1 cut(s) | 1028 |
| ZrmI | AGTACT | 2 cut(s) | 995, 1376 |