ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 1482 |
| AccI | GTMKAC | 1 cut(s) | 345 |
| AccII | CGCG | 2 cut(s) | 1048, 1144 |
| AciI | CCGC | 4 cut(s) | 1046, 1149, 1160, 1247 |
| AclWI | GGATC | 3 cut(s) | 425, 438, 1109 |
| AcoI | YGGCCR | 1 cut(s) | 1308 |
| AcsI | RAATTY | 3 cut(s) | 185, 557, 1014 |
| AcuI | CTGAAG | 4 cut(s) | 510, 779, 843, 963 |
| AfaI | GTAC | 4 cut(s) | 85, 612, 666, 1564 |
| AfeI | AGCGCT | 1 cut(s) | 1458 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1094 |
| AflIII | ACRYGT | 2 cut(s) | 1037, 1555 |
| AgeI | ACCGGT | 1 cut(s) | 1655 |
| AgsI | TTSAA | 5 cut(s) | 61, 959, 999, 1004, 1021 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 813, 1041 |
| AhlI | ACTAGT | 1 cut(s) | 31 |
| AjiI | CACGTC | 1 cut(s) | 1558 |
| AjnI | CCWGG | 1 cut(s) | 1606 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1121, 1153 |
| AleI | CACNNNNGTG | 1 cut(s) | 860 |
| Alw26I | GTCTC | 3 cut(s) | 54, 1418, 1618 |
| AlwI | GGATC | 3 cut(s) | 425, 438, 1109 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 326, 1607 |
| Aor51HI | AGCGCT | 1 cut(s) | 1458 |
| AoxI | GGCC | 5 cut(s) | 19, 269, 894, 982, 1308 |
| ApeKI | GCWGC | 4 cut(s) | 738, 819, 1232, 1459 |
| ApoI | RAATTY | 3 cut(s) | 185, 557, 1014 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 433, 465 |
| AsiGI | ACCGGT | 1 cut(s) | 1655 |
| AspLEI | GCGC | 6 cut(s) | 403, 513, 1144, 1441, 1459, 1483 |
| AspS9I | GGNCC | 3 cut(s) | 19, 459, 1604 |
| AsuHPI | GGTGA | 3 cut(s) | 1084, 1622, 1670 |
| AsuNHI | GCTAGC | 1 cut(s) | 965 |
| AvaII | GGWCC | 2 cut(s) | 459, 1604 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1546, 1579 |
| BalI | TGGCCA | 1 cut(s) | 1310 |
| BamHI | GGATCC | 1 cut(s) | 430 |
| BbsI | GAAGAC | 1 cut(s) | 1277 |
| BbvI | GCAGC | 4 cut(s) | 725, 831, 1244, 1446 |
| BccI | CCATC | 5 cut(s) | 210, 442, 1223, 1294, 1330 |
| BceAI | ACGGC | 1 cut(s) | 954 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 467, 501 |
| BciT130I | CCWGG | 1 cut(s) | 1608 |
| BclI | TGATCA | 1 cut(s) | 1386 |
| BcoDI | GTCTC | 3 cut(s) | 54, 1418, 1618 |
| BcuI | ACTAGT | 1 cut(s) | 31 |
| BfaI | CTAG | 8 cut(s) | 32, 657, 885, 941, 966, 1368, 1442, 1717 |
| BfmI | CTRYAG | 2 cut(s) | 327, 921 |
| BfoI | RGCGCY | 1 cut(s) | 1460 |
| BglII | AGATCT | 3 cut(s) | 227, 290, 1006 |
| BisI | GCNGC | 4 cut(s) | 739, 820, 1233, 1460 |
| BlsI | GCNGC | 4 cut(s) | 740, 821, 1234, 1461 |
| BmcAI | AGTACT | 1 cut(s) | 612 |
| Bme1390I | CCNGG | 1 cut(s) | 1608 |
| Bme18I | GGWCC | 2 cut(s) | 459, 1604 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 813, 1041 |
| BmgBI | CACGTC | 1 cut(s) | 1558 |
| BmgT120I | GGNCC | 3 cut(s) | 19, 459, 1604 |
| BmiI | GGNNCC | 2 cut(s) | 432, 872 |
| BmrFI | CCNGG | 1 cut(s) | 1608 |
| BmsI | GCATC | 2 cut(s) | 1090, 1585 |
| BmtI | GCTAGC | 1 cut(s) | 969 |
| BpiI | GAAGAC | 1 cut(s) | 1277 |
| BpmI | CTGGAG | 3 cut(s) | 359, 1286, 1536 |
| Bpu10I | CCTNAGC | 1 cut(s) | 649 |
| BsaAI | YACGTR | 1 cut(s) | 1688 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1106, 1548 |
| BsaI | GGTCTC | 1 cut(s) | 54 |
| BsaJI | CCNNGG | 1 cut(s) | 1616 |
| BsaWI | WCCGGW | 1 cut(s) | 1655 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1094 |
| Bse118I | RCCGGY | 1 cut(s) | 1655 |
| Bse1I | ACTGG | 1 cut(s) | 1311 |
| Bse3DI | GCAATG | 2 cut(s) | 368, 420 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1106, 1548 |
| BseBI | CCWGG | 1 cut(s) | 1608 |
| BseDI | CCNNGG | 1 cut(s) | 1616 |
| BseGI | GGATG | 5 cut(s) | 161, 434, 1081, 1215, 1341 |
| BseJI | GATNNNNATC | 2 cut(s) | 1106, 1548 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1094 |
| BseMI | GCAATG | 2 cut(s) | 368, 420 |
| BseMII | CTCAG | 4 cut(s) | 333, 1128, 1239, 1490 |
| BseNI | ACTGG | 1 cut(s) | 1311 |
| BseXI | GCAGC | 4 cut(s) | 725, 831, 1244, 1446 |
| BseYI | CCCAGC | 2 cut(s) | 16, 172 |
| BsgI | GTGCAG | 1 cut(s) | 955 |
| Bsh1236I | CGCG | 2 cut(s) | 1048, 1144 |
| BshFI | GGCC | 5 cut(s) | 21, 271, 896, 984, 1310 |
| BshTI | ACCGGT | 1 cut(s) | 1655 |
| BsiSI | CCGG | 1 cut(s) | 1656 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1094 |
| BsmAI | GTCTC | 3 cut(s) | 54, 1418, 1618 |
| BsnI | GGCC | 5 cut(s) | 21, 271, 896, 984, 1310 |
| Bso31I | GGTCTC | 1 cut(s) | 54 |
| Bsp1407I | TGTACA | 1 cut(s) | 83 |
| Bsp143I | GATC | 9 cut(s) | 115, 227, 290, 430, 1006, 1101, 1107, 1386, 1549 |
| BspACI | CCGC | 4 cut(s) | 1046, 1149, 1160, 1247 |
| BspANI | GGCC | 5 cut(s) | 21, 271, 896, 984, 1310 |
| BspCNI | CTCAG | 4 cut(s) | 332, 1127, 1238, 1491 |
| BspFNI | CGCG | 2 cut(s) | 1048, 1144 |
| BspLI | GGNNCC | 2 cut(s) | 432, 872 |
| BspOI | GCTAGC | 1 cut(s) | 969 |
| BspPI | GGATC | 3 cut(s) | 425, 438, 1109 |
| BspTNI | GGTCTC | 1 cut(s) | 54 |
| BsrDI | GCAATG | 2 cut(s) | 368, 420 |
| BsrFI | RCCGGY | 1 cut(s) | 1655 |
| BsrGI | TGTACA | 1 cut(s) | 83 |
| BsrI | ACTGG | 1 cut(s) | 1311 |
| BssAI | RCCGGY | 1 cut(s) | 1655 |
| BssECI | CCNNGG | 1 cut(s) | 1616 |
| BssMI | GATC | 9 cut(s) | 115, 227, 290, 430, 1006, 1101, 1107, 1386, 1549 |
| Bst2UI | CCWGG | 1 cut(s) | 1608 |
| Bst4CI | ACNGT | 1 cut(s) | 1617 |
| Bst6I | CTCTTC | 2 cut(s) | 57, 469 |
| BstAUI | TGTACA | 1 cut(s) | 83 |
| BstBAI | YACGTR | 1 cut(s) | 1688 |
| BstC8I | GCNNGC | 9 cut(s) | 479, 515, 762, 850, 882, 938, 967, 1512, 1651 |
| BstDEI | CTNAG | 5 cut(s) | 319, 649, 1114, 1225, 1499 |
| BstDSI | CCRYGG | 1 cut(s) | 1616 |
| BstF5I | GGATG | 5 cut(s) | 161, 434, 1081, 1215, 1341 |
| BstFNI | CGCG | 2 cut(s) | 1048, 1144 |
| BstH2I | RGCGCY | 1 cut(s) | 1460 |
| BstHHI | GCGC | 6 cut(s) | 403, 513, 1144, 1441, 1459, 1483 |
| BstKTI | GATC | 9 cut(s) | 118, 230, 293, 433, 1009, 1104, 1110, 1389, 1552 |
| BstMAI | GTCTC | 3 cut(s) | 54, 1418, 1618 |
| BstMBI | GATC | 9 cut(s) | 115, 227, 290, 430, 1006, 1101, 1107, 1386, 1549 |
| BstNI | CCWGG | 1 cut(s) | 1608 |
| BstNSI | RCATGY | 6 cut(s) | 197, 793, 852, 884, 991, 1041 |
| BstSCI | CCNGG | 1 cut(s) | 1606 |
| BstSFI | CTRYAG | 2 cut(s) | 327, 921 |
| BstUI | CGCG | 2 cut(s) | 1048, 1144 |
| BstV1I | GCAGC | 4 cut(s) | 725, 831, 1244, 1446 |
| BstV2I | GAAGAC | 1 cut(s) | 1277 |
| BstX2I | RGATCY | 4 cut(s) | 227, 290, 430, 1006 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 172, 427 |
| BstYI | RGATCY | 4 cut(s) | 227, 290, 430, 1006 |
| BsuRI | GGCC | 5 cut(s) | 21, 271, 896, 984, 1310 |
| BtgI | CCRYGG | 1 cut(s) | 1616 |
| BtrI | CACGTC | 1 cut(s) | 1558 |
| BtsCI | GGATG | 5 cut(s) | 161, 434, 1081, 1215, 1341 |
| BtsIMutI | CAGTG | 2 cut(s) | 867, 1441 |
| Cac8I | GCNNGC | 9 cut(s) | 479, 515, 762, 850, 882, 938, 967, 1512, 1651 |
| CaiI | CAGNNNCTG | 2 cut(s) | 326, 1607 |
| CfoI | GCGC | 6 cut(s) | 403, 513, 1144, 1441, 1459, 1483 |
| Cfr10I | RCCGGY | 1 cut(s) | 1655 |
| Cfr13I | GGNCC | 3 cut(s) | 19, 459, 1604 |
| CseI | GACGC | 2 cut(s) | 1037, 1595 |
| CsiI | ACCWGGT | 1 cut(s) | 1606 |
| Csp6I | GTAC | 4 cut(s) | 84, 611, 665, 1563 |
| CspAI | ACCGGT | 1 cut(s) | 1655 |
| CviQI | GTAC | 4 cut(s) | 84, 611, 665, 1563 |
| DdeI | CTNAG | 5 cut(s) | 319, 649, 1114, 1225, 1499 |
| DpnI | GATC | 9 cut(s) | 117, 229, 292, 432, 1008, 1103, 1109, 1388, 1551 |
| DpnII | GATC | 9 cut(s) | 115, 227, 290, 430, 1006, 1101, 1107, 1386, 1549 |
| DriI | GACNNNNNGTC | 2 cut(s) | 813, 1041 |
| EaeI | YGGCCR | 1 cut(s) | 1308 |
| Eam1104I | CTCTTC | 2 cut(s) | 57, 469 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 813, 1041 |
| EarI | CTCTTC | 2 cut(s) | 57, 469 |
| EciI | GGCGGA | 1 cut(s) | 1262 |
| Eco31I | GGTCTC | 1 cut(s) | 54 |
| Eco47I | GGWCC | 2 cut(s) | 459, 1604 |
| Eco47III | AGCGCT | 1 cut(s) | 1458 |
| Eco57I | CTGAAG | 4 cut(s) | 510, 779, 843, 963 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1604 |
| EcoRII | CCWGG | 1 cut(s) | 1606 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 700, 732 |
| FauI | CCCGC | 1 cut(s) | 1142 |
| FbaI | TGATCA | 1 cut(s) | 1386 |
| FblI | GTMKAC | 1 cut(s) | 345 |
| Fnu4HI | GCNGC | 4 cut(s) | 739, 820, 1233, 1460 |
| FokI | GGATG | 5 cut(s) | 148, 421, 1068, 1202, 1348 |
| Fsp4HI | GCNGC | 4 cut(s) | 739, 820, 1233, 1460 |
| FspBI | CTAG | 8 cut(s) | 32, 657, 885, 941, 966, 1368, 1442, 1717 |
| FspI | TGCGCA | 1 cut(s) | 1482 |
| GlaI | GCGC | 6 cut(s) | 402, 512, 1143, 1440, 1458, 1482 |
| GluI | GCNGC | 4 cut(s) | 739, 820, 1233, 1460 |
| GsaI | CCCAGC | 2 cut(s) | 20, 176 |
| GsuI | CTGGAG | 3 cut(s) | 359, 1286, 1536 |
| HaeII | RGCGCY | 1 cut(s) | 1460 |
| HaeIII | GGCC | 5 cut(s) | 21, 271, 896, 984, 1310 |
| HapII | CCGG | 1 cut(s) | 1656 |
| HgaI | GACGC | 2 cut(s) | 1037, 1595 |
| HhaI | GCGC | 6 cut(s) | 403, 513, 1144, 1441, 1459, 1483 |
| Hin6I | GCGC | 6 cut(s) | 401, 511, 1142, 1439, 1457, 1481 |
| HinP1I | GCGC | 6 cut(s) | 401, 511, 1142, 1439, 1457, 1481 |
| HincII | GTYRAC | 1 cut(s) | 585 |
| HindII | GTYRAC | 1 cut(s) | 585 |
| HinfI | GANTC | 4 cut(s) | 686, 694, 1670, 1706 |
| HpaII | CCGG | 1 cut(s) | 1656 |
| HphI | GGTGA | 3 cut(s) | 1084, 1622, 1670 |
| Hpy166II | GTNNAC | 5 cut(s) | 346, 585, 665, 1613, 1661 |
| Hpy188I | TCNGA | 5 cut(s) | 290, 675, 1013, 1117, 1540 |
| Hpy188III | TCNNGA | 4 cut(s) | 657, 1004, 1105, 1169 |
| Hpy8I | GTNNAC | 5 cut(s) | 346, 585, 665, 1613, 1661 |
| Hpy99I | CGWCG | 2 cut(s) | 147, 1589 |
| HpyAV | CCTTC | 7 cut(s) | 168, 528, 534, 534, 586, 670, 1326 |
| HpyCH4III | ACNGT | 1 cut(s) | 1617 |
| HpyCH4IV | ACGT | 3 cut(s) | 1557, 1663, 1687 |
| HpyF3I | CTNAG | 5 cut(s) | 319, 649, 1114, 1225, 1499 |
| HpySE526I | ACGT | 3 cut(s) | 1557, 1663, 1687 |
| HspAI | GCGC | 6 cut(s) | 401, 511, 1142, 1439, 1457, 1481 |
| Ksp22I | TGATCA | 1 cut(s) | 1386 |
| Kzo9I | GATC | 9 cut(s) | 115, 227, 290, 430, 1006, 1101, 1107, 1386, 1549 |
| LmnI | GCTCC | 3 cut(s) | 378, 735, 1060 |
| Lsp1109I | GCAGC | 4 cut(s) | 725, 831, 1244, 1446 |
| LweI | GCATC | 2 cut(s) | 1090, 1585 |
| MabI | ACCWGGT | 1 cut(s) | 1606 |
| MaeI | CTAG | 8 cut(s) | 32, 657, 885, 941, 966, 1368, 1442, 1717 |
| MaeII | ACGT | 3 cut(s) | 1557, 1663, 1687 |
| MaeIII | GTNAC | 3 cut(s) | 617, 695, 1033 |
| MalI | GATC | 9 cut(s) | 117, 229, 292, 432, 1008, 1103, 1109, 1388, 1551 |
| MboI | GATC | 9 cut(s) | 115, 227, 290, 430, 1006, 1101, 1107, 1386, 1549 |
| MboII | GAAGA | 6 cut(s) | 44, 193, 456, 590, 1282, 1553 |
| MflI | RGATCY | 4 cut(s) | 227, 290, 430, 1006 |
| MlsI | TGGCCA | 1 cut(s) | 1310 |
| MluNI | TGGCCA | 1 cut(s) | 1310 |
| MlyI | GAGTC | 2 cut(s) | 703, 1700 |
| MmeI | TCCRAC | 1 cut(s) | 653 |
| Mox20I | TGGCCA | 1 cut(s) | 1310 |
| MscI | TGGCCA | 1 cut(s) | 1310 |
| MseI | TTAA | 2 cut(s) | 42, 830 |
| MslI | CAYNNNNRTG | 1 cut(s) | 860 |
| Msp20I | TGGCCA | 1 cut(s) | 1310 |
| MspI | CCGG | 1 cut(s) | 1656 |
| MspR9I | CCNGG | 1 cut(s) | 1608 |
| MvaI | CCWGG | 1 cut(s) | 1608 |
| MvnI | CGCG | 2 cut(s) | 1048, 1144 |
| NdeII | GATC | 9 cut(s) | 115, 227, 290, 430, 1006, 1101, 1107, 1386, 1549 |
| NheI | GCTAGC | 1 cut(s) | 965 |
| NlaIV | GGNNCC | 2 cut(s) | 432, 872 |
| NmuCI | GTSAC | 3 cut(s) | 617, 695, 1033 |
| NsbI | TGCGCA | 1 cut(s) | 1482 |
| NspI | RCATGY | 6 cut(s) | 197, 793, 852, 884, 991, 1041 |
| OliI | CACNNNNGTG | 1 cut(s) | 860 |
| PaeI | GCATGC | 2 cut(s) | 852, 884 |
| PciI | ACATGT | 1 cut(s) | 1037 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 124 |
| PfeI | GAWTC | 2 cut(s) | 686, 1670 |
| PinAI | ACCGGT | 1 cut(s) | 1655 |
| PkrI | GCNGC | 4 cut(s) | 740, 821, 1234, 1461 |
| PleI | GAGTC | 2 cut(s) | 702, 1700 |
| PpsI | GAGTC | 2 cut(s) | 702, 1700 |
| Ppu21I | YACGTR | 1 cut(s) | 1688 |
| PpuMI | RGGWCCY | 1 cut(s) | 1604 |
| PscI | ACATGT | 1 cut(s) | 1037 |
| Psp5II | RGGWCCY | 1 cut(s) | 1604 |
| Psp6I | CCWGG | 1 cut(s) | 1606 |
| PspFI | CCCAGC | 2 cut(s) | 16, 172 |
| PspGI | CCWGG | 1 cut(s) | 1606 |
| PspN4I | GGNNCC | 2 cut(s) | 432, 872 |
| PspPI | GGNCC | 3 cut(s) | 19, 459, 1604 |
| PspPPI | RGGWCCY | 1 cut(s) | 1604 |
| PstNI | CAGNNNCTG | 2 cut(s) | 326, 1607 |
| PsuI | RGATCY | 4 cut(s) | 227, 290, 430, 1006 |
| RsaI | GTAC | 4 cut(s) | 85, 612, 666, 1564 |
| RsaNI | GTAC | 4 cut(s) | 84, 611, 665, 1563 |
| RseI | CAYNNNNRTG | 1 cut(s) | 860 |
| SaqAI | TTAA | 2 cut(s) | 42, 830 |
| SatI | GCNGC | 4 cut(s) | 739, 820, 1233, 1460 |
| Sau3AI | GATC | 9 cut(s) | 115, 227, 290, 430, 1006, 1101, 1107, 1386, 1549 |
| Sau96I | GGNCC | 3 cut(s) | 19, 459, 1604 |
| ScaI | AGTACT | 1 cut(s) | 612 |
| SchI | GAGTC | 2 cut(s) | 703, 1700 |
| ScrFI | CCNGG | 1 cut(s) | 1608 |
| SexAI | ACCWGGT | 1 cut(s) | 1606 |
| SfaNI | GCATC | 2 cut(s) | 1090, 1585 |
| SfcI | CTRYAG | 2 cut(s) | 327, 921 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1655 |
| SinI | GGWCC | 2 cut(s) | 459, 1604 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 860 |
| SpeI | ACTAGT | 1 cut(s) | 31 |
| SphI | GCATGC | 2 cut(s) | 852, 884 |
| SsiI | CCGC | 4 cut(s) | 1046, 1149, 1160, 1247 |
| SspMI | CTAG | 8 cut(s) | 32, 657, 885, 941, 966, 1368, 1442, 1717 |
| StyD4I | CCNGG | 1 cut(s) | 1606 |
| TaaI | ACNGT | 1 cut(s) | 1617 |
| TaiI | ACGT | 3 cut(s) | 1560, 1666, 1690 |
| TaqI | TCGA | 3 cut(s) | 554, 607, 1584 |
| TaqII | GACCGA | 1 cut(s) | 36 |
| TatI | WGTACW | 3 cut(s) | 83, 610, 664 |
| TfiI | GAWTC | 2 cut(s) | 686, 1670 |
| Tru1I | TTAA | 2 cut(s) | 42, 830 |
| Tru9I | TTAA | 2 cut(s) | 42, 830 |
| TscAI | CASTG | 2 cut(s) | 867, 1441 |
| TseFI | GTSAC | 3 cut(s) | 617, 695, 1033 |
| TseI | GCWGC | 4 cut(s) | 738, 819, 1232, 1459 |
| Tsp45I | GTSAC | 3 cut(s) | 617, 695, 1033 |
| TspDTI | ATGAA | 4 cut(s) | 17, 21, 150, 371 |
| TspGWI | ACGGA | 1 cut(s) | 1550 |
| TspRI | CASTG | 2 cut(s) | 867, 1441 |
| VpaK11BI | GGWCC | 2 cut(s) | 459, 1604 |
| XapI | RAATTY | 3 cut(s) | 185, 557, 1014 |
| XbaI | TCTAGA | 1 cut(s) | 656 |
| XceI | RCATGY | 6 cut(s) | 197, 793, 852, 884, 991, 1041 |
| XmiI | GTMKAC | 1 cut(s) | 345 |
| XspI | CTAG | 8 cut(s) | 32, 657, 885, 941, 966, 1368, 1442, 1717 |
| ZrmI | AGTACT | 1 cut(s) | 612 |