Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 340 |
| AccII | CGCG | 1 cut(s) | 697 |
| AciI | CCGC | 3 cut(s) | 456, 570, 697 |
| AclI | AACGTT | 1 cut(s) | 119 |
| AcoI | YGGCCR | 1 cut(s) | 249 |
| AcuI | CTGAAG | 1 cut(s) | 136 |
| AgeI | ACCGGT | 1 cut(s) | 509 |
| AgsI | TTSAA | 2 cut(s) | 80, 437 |
| AjnI | CCWGG | 2 cut(s) | 185, 591 |
| AluBI | AGCT | 3 cut(s) | 33, 156, 578 |
| AluI | AGCT | 3 cut(s) | 33, 156, 578 |
| AoxI | GGCC | 3 cut(s) | 249, 463, 616 |
| ApeKI | GCWGC | 2 cut(s) | 107, 575 |
| AsiGI | ACCGGT | 1 cut(s) | 509 |
| AspS9I | GGNCC | 3 cut(s) | 503, 587, 616 |
| AsuHPI | GGTGA | 3 cut(s) | 128, 297, 339 |
| AvaII | GGWCC | 2 cut(s) | 503, 587 |
| BaeGI | GKGCMC | 1 cut(s) | 55 |
| BalI | TGGCCA | 1 cut(s) | 251 |
| BanII | GRGCYC | 1 cut(s) | 238 |
| BbvCI | CCTCAGC | 1 cut(s) | 460 |
| BbvI | GCAGC | 2 cut(s) | 94, 587 |
| BccI | CCATC | 2 cut(s) | 282, 627 |
| BciT130I | CCWGG | 2 cut(s) | 187, 593 |
| BfaI | CTAG | 1 cut(s) | 715 |
| BisI | GCNGC | 4 cut(s) | 108, 457, 576, 698 |
| BlsI | GCNGC | 4 cut(s) | 109, 458, 577, 699 |
| Bme1390I | CCNGG | 2 cut(s) | 187, 593 |
| Bme18I | GGWCC | 2 cut(s) | 503, 587 |
| BmgT120I | GGNCC | 3 cut(s) | 503, 587, 616 |
| BmiI | GGNNCC | 3 cut(s) | 589, 617, 687 |
| BmrFI | CCNGG | 2 cut(s) | 187, 593 |
| BmrI | ACTGGG | 2 cut(s) | 542, 576 |
| BmuI | ACTGGG | 2 cut(s) | 542, 576 |
| Bpu10I | CCTNAGC | 1 cut(s) | 460 |
| BpuEI | CTTGAG | 1 cut(s) | 222 |
| Bsa29I | ATCGAT | 1 cut(s) | 349 |
| BsaJI | CCNNGG | 5 cut(s) | 185, 252, 426, 591, 592 |
| BsaWI | WCCGGW | 1 cut(s) | 509 |
| Bse118I | RCCGGY | 2 cut(s) | 509, 682 |
| Bse1I | ACTGG | 2 cut(s) | 548, 582 |
| Bse3DI | GCAATG | 1 cut(s) | 279 |
| BseBI | CCWGG | 2 cut(s) | 187, 593 |
| BseCI | ATCGAT | 1 cut(s) | 349 |
| BseDI | CCNNGG | 5 cut(s) | 185, 252, 426, 591, 592 |
| BseGI | GGATG | 1 cut(s) | 619 |
| BseMI | GCAATG | 1 cut(s) | 279 |
| BseMII | CTCAG | 1 cut(s) | 451 |
| BseNI | ACTGG | 2 cut(s) | 548, 582 |
| BseSI | GKGCMC | 1 cut(s) | 55 |
| BseXI | GCAGC | 2 cut(s) | 94, 587 |
| BsgI | GTGCAG | 1 cut(s) | 7 |
| Bsh1236I | CGCG | 1 cut(s) | 697 |
| BshFI | GGCC | 3 cut(s) | 251, 465, 618 |
| BshTI | ACCGGT | 1 cut(s) | 509 |
| BshVI | ATCGAT | 1 cut(s) | 349 |
| BsiSI | CCGG | 3 cut(s) | 501, 510, 683 |
| BslFI | GGGAC | 2 cut(s) | 573, 610 |
| BsmFI | GGGAC | 2 cut(s) | 573, 610 |
| BsnI | GGCC | 3 cut(s) | 251, 465, 618 |
| Bsp1286I | GDGCHC | 2 cut(s) | 55, 238 |
| Bsp143I | GATC | 2 cut(s) | 2, 59 |
| BspACI | CCGC | 3 cut(s) | 456, 570, 697 |
| BspANI | GGCC | 3 cut(s) | 251, 465, 618 |
| BspCNI | CTCAG | 1 cut(s) | 452 |
| BspDI | ATCGAT | 1 cut(s) | 349 |
| BspFNI | CGCG | 1 cut(s) | 697 |
| BspHI | TCATGA | 1 cut(s) | 167 |
| BspLI | GGNNCC | 3 cut(s) | 589, 617, 687 |
| BsrDI | GCAATG | 1 cut(s) | 279 |
| BsrFI | RCCGGY | 2 cut(s) | 509, 682 |
| BsrI | ACTGG | 2 cut(s) | 548, 582 |
| BssAI | RCCGGY | 2 cut(s) | 509, 682 |
| BssECI | CCNNGG | 5 cut(s) | 185, 252, 426, 591, 592 |
| BssMI | GATC | 2 cut(s) | 2, 59 |
| BssT1I | CCWWGG | 1 cut(s) | 426 |
| Bst2UI | CCWGG | 2 cut(s) | 187, 593 |
| Bst4CI | ACNGT | 3 cut(s) | 174, 256, 304 |
| BstC8I | GCNNGC | 2 cut(s) | 564, 568 |
| BstDEI | CTNAG | 1 cut(s) | 460 |
| BstDSI | CCRYGG | 1 cut(s) | 252 |
| BstF5I | GGATG | 1 cut(s) | 619 |
| BstFNI | CGCG | 1 cut(s) | 697 |
| BstKTI | GATC | 2 cut(s) | 5, 62 |
| BstMBI | GATC | 2 cut(s) | 2, 59 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 30, 462, 552, 572 |
| BstNI | CCWGG | 2 cut(s) | 187, 593 |
| BstNSI | RCATGY | 2 cut(s) | 500, 566 |
| BstSCI | CCNGG | 2 cut(s) | 185, 591 |
| BstSLI | GKGCMC | 1 cut(s) | 55 |
| BstUI | CGCG | 1 cut(s) | 697 |
| BstV1I | GCAGC | 2 cut(s) | 94, 587 |
| Bsu15I | ATCGAT | 1 cut(s) | 349 |
| BsuRI | GGCC | 3 cut(s) | 251, 465, 618 |
| BsuTUI | ATCGAT | 1 cut(s) | 349 |
| BtgI | CCRYGG | 1 cut(s) | 252 |
| BtsCI | GGATG | 1 cut(s) | 619 |
| BtsI | GCAGTG | 1 cut(s) | 541 |
| BtsIMutI | CAGTG | 3 cut(s) | 541, 589, 673 |
| Cac8I | GCNNGC | 2 cut(s) | 564, 568 |
| CciI | TCATGA | 1 cut(s) | 167 |
| Cfr10I | RCCGGY | 2 cut(s) | 509, 682 |
| Cfr13I | GGNCC | 3 cut(s) | 503, 587, 616 |
| ClaI | ATCGAT | 1 cut(s) | 349 |
| CspAI | ACCGGT | 1 cut(s) | 509 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 495, 530 |
| CviAII | CATG | 4 cut(s) | 168, 497, 563, 612 |
| DdeI | CTNAG | 1 cut(s) | 460 |
| DpnI | GATC | 2 cut(s) | 4, 61 |
| DpnII | GATC | 2 cut(s) | 2, 59 |
| DraI | TTTAAA | 1 cut(s) | 10 |
| EaeI | YGGCCR | 1 cut(s) | 249 |
| EciI | GGCGGA | 1 cut(s) | 585 |
| Eco130I | CCWWGG | 1 cut(s) | 426 |
| Eco24I | GRGCYC | 1 cut(s) | 238 |
| Eco47I | GGWCC | 2 cut(s) | 503, 587 |
| Eco57I | CTGAAG | 1 cut(s) | 136 |
| EcoRII | CCWGG | 2 cut(s) | 185, 591 |
| EcoT14I | CCWWGG | 1 cut(s) | 426 |
| EcoT38I | GRGCYC | 1 cut(s) | 238 |
| ErhI | CCWWGG | 1 cut(s) | 426 |
| FaeI | CATG | 4 cut(s) | 171, 500, 566, 615 |
| FaiI | YATR | 7 cut(s) | 169, 262, 402, 498, 564, 608, 613 |
| FaqI | GGGAC | 2 cut(s) | 573, 610 |
| FatI | CATG | 4 cut(s) | 167, 496, 562, 611 |
| FblI | GTMKAC | 1 cut(s) | 340 |
| Fnu4HI | GCNGC | 4 cut(s) | 108, 457, 576, 698 |
| FokI | GGATG | 1 cut(s) | 606 |
| FriOI | GRGCYC | 1 cut(s) | 238 |
| Fsp4HI | GCNGC | 4 cut(s) | 108, 457, 576, 698 |
| FspBI | CTAG | 1 cut(s) | 715 |
| GluI | GCNGC | 4 cut(s) | 108, 457, 576, 698 |
| HaeIII | GGCC | 3 cut(s) | 251, 465, 618 |
| HapII | CCGG | 3 cut(s) | 501, 510, 683 |
| Hin1II | CATG | 4 cut(s) | 171, 500, 566, 615 |
| HinfI | GANTC | 4 cut(s) | 342, 421, 443, 535 |
| HpaII | CCGG | 3 cut(s) | 501, 510, 683 |
| HphI | GGTGA | 3 cut(s) | 128, 297, 339 |
| Hpy166II | GTNNAC | 1 cut(s) | 341 |
| Hpy188I | TCNGA | 3 cut(s) | 115, 481, 658 |
| Hpy188III | TCNNGA | 4 cut(s) | 168, 239, 378, 532 |
| Hpy8I | GTNNAC | 1 cut(s) | 341 |
| Hpy99I | CGWCG | 1 cut(s) | 697 |
| HpyAV | CCTTC | 1 cut(s) | 160 |
| HpyCH4III | ACNGT | 3 cut(s) | 174, 256, 304 |
| HpyCH4IV | ACGT | 3 cut(s) | 119, 599, 692 |
| HpyCH4V | TGCA | 3 cut(s) | 24, 272, 562 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 30, 462, 552, 572 |
| HpyF3I | CTNAG | 1 cut(s) | 460 |
| HpySE526I | ACGT | 3 cut(s) | 119, 599, 692 |
| Hsp92II | CATG | 4 cut(s) | 171, 500, 566, 615 |
| Kzo9I | GATC | 2 cut(s) | 2, 59 |
| LmnI | GCTCC | 4 cut(s) | 362, 572, 583, 691 |
| Lsp1109I | GCAGC | 2 cut(s) | 94, 587 |
| MaeI | CTAG | 1 cut(s) | 715 |
| MaeII | ACGT | 3 cut(s) | 119, 599, 692 |
| MaeIII | GTNAC | 1 cut(s) | 641 |
| MalI | GATC | 2 cut(s) | 4, 61 |
| MboI | GATC | 2 cut(s) | 2, 59 |
| MboII | GAAGA | 2 cut(s) | 50, 463 |
| MhlI | GDGCHC | 2 cut(s) | 55, 238 |
| MlsI | TGGCCA | 1 cut(s) | 251 |
| MluCI | AATT | 4 cut(s) | 41, 223, 294, 317 |
| MluNI | TGGCCA | 1 cut(s) | 251 |
| MlyI | GAGTC | 3 cut(s) | 336, 437, 544 |
| MmeI | TCCRAC | 3 cut(s) | 226, 647, 713 |
| MnlI | CCTC | 5 cut(s) | 209, 446, 455, 549, 637 |
| Mox20I | TGGCCA | 1 cut(s) | 251 |
| MscI | TGGCCA | 1 cut(s) | 251 |
| MseI | TTAA | 4 cut(s) | 9, 97, 180, 661 |
| Msp20I | TGGCCA | 1 cut(s) | 251 |
| MspI | CCGG | 3 cut(s) | 501, 510, 683 |
| MspR9I | CCNGG | 2 cut(s) | 187, 593 |
| MvaI | CCWGG | 2 cut(s) | 187, 593 |
| MvnI | CGCG | 1 cut(s) | 697 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 30, 462, 552, 572 |
| NdeII | GATC | 2 cut(s) | 2, 59 |
| NlaIII | CATG | 4 cut(s) | 171, 500, 566, 615 |
| NlaIV | GGNNCC | 3 cut(s) | 589, 617, 687 |
| NspI | RCATGY | 2 cut(s) | 500, 566 |
| PaeI | GCATGC | 1 cut(s) | 566 |
| PagI | TCATGA | 1 cut(s) | 167 |
| PasI | CCCWGGG | 1 cut(s) | 592 |
| PfeI | GAWTC | 1 cut(s) | 421 |
| PinAI | ACCGGT | 1 cut(s) | 509 |
| PkrI | GCNGC | 4 cut(s) | 109, 458, 577, 699 |
| PleI | GAGTC | 3 cut(s) | 336, 437, 543 |
| PpsI | GAGTC | 3 cut(s) | 336, 437, 543 |
| Psp1406I | AACGTT | 1 cut(s) | 119 |
| Psp6I | CCWGG | 2 cut(s) | 185, 591 |
| PspGI | CCWGG | 2 cut(s) | 185, 591 |
| PspN4I | GGNNCC | 3 cut(s) | 589, 617, 687 |
| PspPI | GGNCC | 3 cut(s) | 503, 587, 616 |
| SaqAI | TTAA | 4 cut(s) | 9, 97, 180, 661 |
| SatI | GCNGC | 4 cut(s) | 108, 457, 576, 698 |
| Sau3AI | GATC | 2 cut(s) | 2, 59 |
| Sau96I | GGNCC | 3 cut(s) | 503, 587, 616 |
| SchI | GAGTC | 3 cut(s) | 336, 437, 544 |
| ScrFI | CCNGG | 2 cut(s) | 187, 593 |
| SduI | GDGCHC | 2 cut(s) | 55, 238 |
| SetI | ASST | 9 cut(s) | 35, 68, 88, 122, 158, 580, 602, 629, 695 |
| SinI | GGWCC | 2 cut(s) | 503, 587 |
| SmlI | CTYRAG | 1 cut(s) | 237 |
| SmoI | CTYRAG | 1 cut(s) | 237 |
| SphI | GCATGC | 1 cut(s) | 566 |
| Sse9I | AATT | 4 cut(s) | 41, 223, 294, 317 |
| SsiI | CCGC | 3 cut(s) | 456, 570, 697 |
| SspMI | CTAG | 1 cut(s) | 715 |
| StyD4I | CCNGG | 2 cut(s) | 185, 591 |
| StyI | CCWWGG | 1 cut(s) | 426 |
| TaaI | ACNGT | 3 cut(s) | 174, 256, 304 |
| TaiI | ACGT | 3 cut(s) | 122, 602, 695 |
| TaqI | TCGA | 2 cut(s) | 349, 629 |
| TasI | AATT | 4 cut(s) | 41, 223, 294, 317 |
| TauI | GCSGC | 2 cut(s) | 459, 700 |
| TfiI | GAWTC | 1 cut(s) | 421 |
| Tru1I | TTAA | 4 cut(s) | 9, 97, 180, 661 |
| Tru9I | TTAA | 4 cut(s) | 9, 97, 180, 661 |
| TscAI | CASTG | 3 cut(s) | 548, 589, 680 |
| TseI | GCWGC | 2 cut(s) | 107, 575 |
| TspDTI | ATGAA | 4 cut(s) | 156, 182, 249, 389 |
| TspRI | CASTG | 3 cut(s) | 548, 589, 680 |
| VpaK11BI | GGWCC | 2 cut(s) | 503, 587 |
| XceI | RCATGY | 2 cut(s) | 500, 566 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 589 |
| XmiI | GTMKAC | 1 cut(s) | 340 |
| XspI | CTAG | 1 cut(s) | 715 |