ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 598 |
| Acc36I | ACCTGC | 1 cut(s) | 598 |
| AciI | CCGC | 1 cut(s) | 477 |
| AclWI | GGATC | 1 cut(s) | 742 |
| AcoI | YGGCCR | 1 cut(s) | 634 |
| AcsI | RAATTY | 1 cut(s) | 320 |
| AdeI | CACNNNGTG | 1 cut(s) | 297 |
| AfaI | GTAC | 1 cut(s) | 302 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 521 |
| AgsI | TTSAA | 6 cut(s) | 194, 439, 499, 737, 856, 867 |
| AjnI | CCWGG | 3 cut(s) | 68, 580, 845 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 500, 532, 781, 813 |
| AluBI | AGCT | 5 cut(s) | 85, 116, 124, 392, 859 |
| AluI | AGCT | 5 cut(s) | 85, 116, 124, 392, 859 |
| Alw21I | GWGCWC | 2 cut(s) | 96, 578 |
| Alw26I | GTCTC | 1 cut(s) | 78 |
| AlwI | GGATC | 1 cut(s) | 742 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 883 |
| AoxI | GGCC | 2 cut(s) | 142, 634 |
| ApeKI | GCWGC | 1 cut(s) | 116 |
| ApoI | RAATTY | 1 cut(s) | 320 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 305, 337 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 240, 892 |
| AsuHPI | GGTGA | 5 cut(s) | 116, 272, 536, 622, 771 |
| Bbv12I | GWGCWC | 2 cut(s) | 96, 578 |
| BbvI | GCAGC | 1 cut(s) | 103 |
| BccI | CCATC | 3 cut(s) | 44, 419, 653 |
| BceAI | ACGGC | 2 cut(s) | 157, 621 |
| BciT130I | CCWGG | 3 cut(s) | 70, 582, 847 |
| BcoDI | GTCTC | 1 cut(s) | 78 |
| BfaI | CTAG | 2 cut(s) | 131, 671 |
| BfuAI | ACCTGC | 1 cut(s) | 598 |
| BisI | GCNGC | 1 cut(s) | 117 |
| BlsI | GCNGC | 1 cut(s) | 118 |
| Bme1390I | CCNGG | 3 cut(s) | 70, 582, 847 |
| BmiI | GGNNCC | 2 cut(s) | 58, 453 |
| BmrFI | CCNGG | 3 cut(s) | 70, 582, 847 |
| BmsI | GCATC | 2 cut(s) | 253, 906 |
| Bpu10I | CCTNAGC | 1 cut(s) | 402 |
| Bsa29I | ATCGAT | 1 cut(s) | 947 |
| BsaI | GGTCTC | 1 cut(s) | 78 |
| BsaJI | CCNNGG | 4 cut(s) | 20, 580, 581, 845 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 521 |
| Bse118I | RCCGGY | 2 cut(s) | 362, 697 |
| Bse1I | ACTGG | 1 cut(s) | 248 |
| Bse3DI | GCAATG | 2 cut(s) | 267, 602 |
| BseBI | CCWGG | 3 cut(s) | 70, 582, 847 |
| BseCI | ATCGAT | 1 cut(s) | 947 |
| BseDI | CCNNGG | 4 cut(s) | 20, 580, 581, 845 |
| BseGI | GGATG | 1 cut(s) | 435 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 521 |
| BseMI | GCAATG | 2 cut(s) | 267, 602 |
| BseMII | CTCAG | 2 cut(s) | 393, 875 |
| BseNI | ACTGG | 1 cut(s) | 248 |
| BseRI | GAGGAG | 2 cut(s) | 60, 444 |
| BseXI | GCAGC | 1 cut(s) | 103 |
| BseYI | CCCAGC | 1 cut(s) | 120 |
| Bsh1285I | CGRYCG | 1 cut(s) | 689 |
| BshFI | GGCC | 2 cut(s) | 144, 636 |
| BshVI | ATCGAT | 1 cut(s) | 947 |
| BsiEI | CGRYCG | 1 cut(s) | 689 |
| BsiHKAI | GWGCWC | 2 cut(s) | 96, 578 |
| BsiSI | CCGG | 3 cut(s) | 224, 363, 698 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 521 |
| BsmAI | GTCTC | 1 cut(s) | 78 |
| BsnI | GGCC | 2 cut(s) | 144, 636 |
| Bso31I | GGTCTC | 1 cut(s) | 78 |
| Bsp1286I | GDGCHC | 2 cut(s) | 96, 578 |
| Bsp143I | GATC | 4 cut(s) | 10, 544, 747, 898 |
| BspACI | CCGC | 1 cut(s) | 477 |
| BspANI | GGCC | 2 cut(s) | 144, 636 |
| BspCNI | CTCAG | 2 cut(s) | 394, 876 |
| BspDI | ATCGAT | 1 cut(s) | 947 |
| BspLI | GGNNCC | 2 cut(s) | 58, 453 |
| BspMI | ACCTGC | 1 cut(s) | 598 |
| BspPI | GGATC | 1 cut(s) | 742 |
| BspTNI | GGTCTC | 1 cut(s) | 78 |
| BsrDI | GCAATG | 2 cut(s) | 267, 602 |
| BsrFI | RCCGGY | 2 cut(s) | 362, 697 |
| BsrI | ACTGG | 1 cut(s) | 248 |
| BssAI | RCCGGY | 2 cut(s) | 362, 697 |
| BssECI | CCNNGG | 4 cut(s) | 20, 580, 581, 845 |
| BssMI | GATC | 4 cut(s) | 10, 544, 747, 898 |
| BssT1I | CCWWGG | 1 cut(s) | 20 |
| Bst2UI | CCWGG | 3 cut(s) | 70, 582, 847 |
| Bst4CI | ACNGT | 1 cut(s) | 690 |
| Bst6I | CTCTTC | 4 cut(s) | 441, 478, 659, 898 |
| BstC8I | GCNNGC | 2 cut(s) | 356, 699 |
| BstDEI | CTNAG | 4 cut(s) | 30, 402, 504, 884 |
| BstF5I | GGATG | 1 cut(s) | 435 |
| BstKTI | GATC | 4 cut(s) | 13, 547, 750, 901 |
| BstMAI | GTCTC | 1 cut(s) | 78 |
| BstMBI | GATC | 4 cut(s) | 10, 544, 747, 898 |
| BstMCI | CGRYCG | 1 cut(s) | 689 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 91, 179, 832 |
| BstNI | CCWGG | 3 cut(s) | 70, 582, 847 |
| BstSCI | CCNGG | 3 cut(s) | 68, 580, 845 |
| BstV1I | GCAGC | 1 cut(s) | 103 |
| Bsu15I | ATCGAT | 1 cut(s) | 947 |
| BsuRI | GGCC | 2 cut(s) | 144, 636 |
| BsuTUI | ATCGAT | 1 cut(s) | 947 |
| BtsCI | GGATG | 1 cut(s) | 435 |
| BtsIMutI | CAGTG | 2 cut(s) | 255, 315 |
| BveI | ACCTGC | 1 cut(s) | 598 |
| Cac8I | GCNNGC | 2 cut(s) | 356, 699 |
| CaiI | CAGNNNCTG | 1 cut(s) | 883 |
| Cfr10I | RCCGGY | 2 cut(s) | 362, 697 |
| ClaI | ATCGAT | 1 cut(s) | 947 |
| Csp6I | GTAC | 1 cut(s) | 301 |
| CviAII | CATG | 1 cut(s) | 294 |
| CviQI | GTAC | 1 cut(s) | 301 |
| DdeI | CTNAG | 4 cut(s) | 30, 402, 504, 884 |
| DpnI | GATC | 4 cut(s) | 12, 546, 749, 900 |
| DpnII | GATC | 4 cut(s) | 10, 544, 747, 898 |
| DraIII | CACNNNGTG | 1 cut(s) | 297 |
| EaeI | YGGCCR | 1 cut(s) | 634 |
| Eam1104I | CTCTTC | 4 cut(s) | 441, 478, 659, 898 |
| EarI | CTCTTC | 4 cut(s) | 441, 478, 659, 898 |
| Eco130I | CCWWGG | 1 cut(s) | 20 |
| Eco31I | GGTCTC | 1 cut(s) | 78 |
| EcoRII | CCWGG | 3 cut(s) | 68, 580, 845 |
| EcoT14I | CCWWGG | 1 cut(s) | 20 |
| ErhI | CCWWGG | 1 cut(s) | 20 |
| FaeI | CATG | 1 cut(s) | 297 |
| FaiI | YATR | 7 cut(s) | 42, 184, 186, 221, 295, 420, 572 |
| FatI | CATG | 1 cut(s) | 293 |
| FauNDI | CATATG | 1 cut(s) | 184 |
| Fnu4HI | GCNGC | 1 cut(s) | 117 |
| FokI | GGATG | 1 cut(s) | 442 |
| Fsp4HI | GCNGC | 1 cut(s) | 117 |
| FspBI | CTAG | 2 cut(s) | 131, 671 |
| GluI | GCNGC | 1 cut(s) | 117 |
| GsaI | CCCAGC | 1 cut(s) | 124 |
| HaeIII | GGCC | 2 cut(s) | 144, 636 |
| HapII | CCGG | 3 cut(s) | 224, 363, 698 |
| Hin1II | CATG | 1 cut(s) | 297 |
| HindIII | AAGCTT | 1 cut(s) | 857 |
| HinfI | GANTC | 7 cut(s) | 167, 343, 508, 596, 722, 874, 944 |
| HpaII | CCGG | 3 cut(s) | 224, 363, 698 |
| HphI | GGTGA | 5 cut(s) | 116, 272, 536, 622, 771 |
| Hpy188I | TCNGA | 5 cut(s) | 82, 113, 166, 879, 898 |
| Hpy188III | TCNNGA | 3 cut(s) | 131, 458, 751 |
| Hpy99I | CGWCG | 1 cut(s) | 82 |
| HpyAV | CCTTC | 9 cut(s) | 28, 95, 130, 200, 223, 250, 748, 873, 944 |
| HpyCH4III | ACNGT | 1 cut(s) | 690 |
| HpyCH4IV | ACGT | 1 cut(s) | 869 |
| HpyCH4V | TGCA | 5 cut(s) | 182, 602, 607, 643, 919 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 91, 179, 832 |
| HpyF3I | CTNAG | 4 cut(s) | 30, 402, 504, 884 |
| HpySE526I | ACGT | 1 cut(s) | 869 |
| Hsp92II | CATG | 1 cut(s) | 297 |
| KroI | GCCGGC | 1 cut(s) | 697 |
| KroNI | GCCGGC | 1 cut(s) | 699 |
| Kzo9I | GATC | 4 cut(s) | 10, 544, 747, 898 |
| LmnI | GCTCC | 6 cut(s) | 82, 99, 113, 389, 457, 581 |
| Lsp1109I | GCAGC | 1 cut(s) | 103 |
| LweI | GCATC | 2 cut(s) | 253, 906 |
| MaeI | CTAG | 2 cut(s) | 131, 671 |
| MaeII | ACGT | 1 cut(s) | 869 |
| MaeIII | GTNAC | 4 cut(s) | 104, 593, 610, 690 |
| MalI | GATC | 4 cut(s) | 12, 546, 749, 900 |
| MboI | GATC | 4 cut(s) | 10, 544, 747, 898 |
| MhlI | GDGCHC | 2 cut(s) | 96, 578 |
| MluCI | AATT | 5 cut(s) | 157, 213, 320, 394, 439 |
| MlyI | GAGTC | 3 cut(s) | 161, 337, 590 |
| MmeI | TCCRAC | 2 cut(s) | 60, 190 |
| MnlI | CCTC | 9 cut(s) | 38, 304, 442, 465, 520, 660, 728, 825, 941 |
| MroNI | GCCGGC | 1 cut(s) | 697 |
| MroXI | GAANNNNTTC | 2 cut(s) | 240, 892 |
| MseI | TTAA | 3 cut(s) | 378, 471, 624 |
| MslI | CAYNNNNRTG | 1 cut(s) | 423 |
| MspI | CCGG | 3 cut(s) | 224, 363, 698 |
| MspR9I | CCNGG | 3 cut(s) | 70, 582, 847 |
| MvaI | CCWGG | 3 cut(s) | 70, 582, 847 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 91, 179, 832 |
| NaeI | GCCGGC | 1 cut(s) | 699 |
| NdeI | CATATG | 1 cut(s) | 184 |
| NdeII | GATC | 4 cut(s) | 10, 544, 747, 898 |
| NgoMIV | GCCGGC | 1 cut(s) | 697 |
| NlaIII | CATG | 1 cut(s) | 297 |
| NlaIV | GGNNCC | 2 cut(s) | 58, 453 |
| NmuCI | GTSAC | 3 cut(s) | 104, 593, 610 |
| PaqCI | CACCTGC | 1 cut(s) | 598 |
| PasI | CCCWGGG | 1 cut(s) | 581 |
| PdiI | GCCGGC | 1 cut(s) | 699 |
| PdmI | GAANNNNTTC | 2 cut(s) | 240, 892 |
| PfeI | GAWTC | 4 cut(s) | 508, 722, 874, 944 |
| PkrI | GCNGC | 1 cut(s) | 118 |
| PleI | GAGTC | 3 cut(s) | 161, 337, 590 |
| PpsI | GAGTC | 3 cut(s) | 161, 337, 590 |
| Psp6I | CCWGG | 3 cut(s) | 68, 580, 845 |
| PspFI | CCCAGC | 1 cut(s) | 120 |
| PspGI | CCWGG | 3 cut(s) | 68, 580, 845 |
| PspN4I | GGNNCC | 2 cut(s) | 58, 453 |
| PstNI | CAGNNNCTG | 1 cut(s) | 883 |
| RsaI | GTAC | 1 cut(s) | 302 |
| RsaNI | GTAC | 1 cut(s) | 301 |
| RseI | CAYNNNNRTG | 1 cut(s) | 423 |
| SaqAI | TTAA | 3 cut(s) | 378, 471, 624 |
| SatI | GCNGC | 1 cut(s) | 117 |
| Sau3AI | GATC | 4 cut(s) | 10, 544, 747, 898 |
| SchI | GAGTC | 3 cut(s) | 161, 337, 590 |
| ScrFI | CCNGG | 3 cut(s) | 70, 582, 847 |
| SduI | GDGCHC | 2 cut(s) | 96, 578 |
| SfaNI | GCATC | 2 cut(s) | 253, 906 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 423 |
| Sse9I | AATT | 5 cut(s) | 157, 213, 320, 394, 439 |
| SsiI | CCGC | 1 cut(s) | 477 |
| SspI | AATATT | 1 cut(s) | 797 |
| SspMI | CTAG | 2 cut(s) | 131, 671 |
| StyD4I | CCNGG | 3 cut(s) | 68, 580, 845 |
| StyI | CCWWGG | 1 cut(s) | 20 |
| TaaI | ACNGT | 1 cut(s) | 690 |
| TaiI | ACGT | 1 cut(s) | 872 |
| TaqI | TCGA | 3 cut(s) | 657, 720, 947 |
| TasI | AATT | 5 cut(s) | 157, 213, 320, 394, 439 |
| TfiI | GAWTC | 4 cut(s) | 508, 722, 874, 944 |
| Tru1I | TTAA | 3 cut(s) | 378, 471, 624 |
| Tru9I | TTAA | 3 cut(s) | 378, 471, 624 |
| TscAI | CASTG | 2 cut(s) | 255, 322 |
| TseFI | GTSAC | 3 cut(s) | 104, 593, 610 |
| TseI | GCWGC | 1 cut(s) | 116 |
| Tsp45I | GTSAC | 3 cut(s) | 104, 593, 610 |
| TspDTI | ATGAA | 2 cut(s) | 699, 957 |
| TspGWI | ACGGA | 3 cut(s) | 66, 86, 576 |
| TspRI | CASTG | 2 cut(s) | 255, 322 |
| XapI | RAATTY | 1 cut(s) | 320 |
| XbaI | TCTAGA | 1 cut(s) | 130 |
| XmnI | GAANNNNTTC | 2 cut(s) | 240, 892 |
| XspI | CTAG | 2 cut(s) | 131, 671 |