ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 154 - 274 | 3.2e-15 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AfiI | CCNNNNNNNGG | 1 cut(s) | 125 |
| AflIII | ACRYGT | 2 cut(s) | 76, 158 |
| AgsI | TTSAA | 2 cut(s) | 414, 663 |
| AjnI | CCWGG | 1 cut(s) | 487 |
| AjuI | GAANNNNNNNTTGG | 1 cut(s) | 809 |
| AleI | CACNNNNGTG | 1 cut(s) | 342 |
| AluBI | AGCT | 4 cut(s) | 13, 266, 302, 500 |
| AluI | AGCT | 4 cut(s) | 13, 266, 302, 500 |
| Alw26I | GTCTC | 2 cut(s) | 61, 405 |
| AoxI | GGCC | 2 cut(s) | 491, 710 |
| ApeKI | GCWGC | 1 cut(s) | 317 |
| AseI | ATTAAT | 1 cut(s) | 590 |
| AspLEI | GCGC | 1 cut(s) | 639 |
| AspS9I | GGNCC | 1 cut(s) | 491 |
| AsuC2I | CCSGG | 1 cut(s) | 333 |
| BbsI | GAAGAC | 1 cut(s) | 239 |
| BbvI | GCAGC | 1 cut(s) | 304 |
| BccI | CCATC | 1 cut(s) | 461 |
| BciT130I | CCWGG | 1 cut(s) | 489 |
| BcnI | CCSGG | 1 cut(s) | 333 |
| BcoDI | GTCTC | 2 cut(s) | 61, 405 |
| BfaI | CTAG | 2 cut(s) | 560, 666 |
| BfmI | CTRYAG | 1 cut(s) | 495 |
| BfoI | RGCGCY | 1 cut(s) | 640 |
| BisI | GCNGC | 1 cut(s) | 318 |
| BlsI | GCNGC | 1 cut(s) | 319 |
| Bme1390I | CCNGG | 2 cut(s) | 333, 489 |
| BmgT120I | GGNCC | 1 cut(s) | 491 |
| BmiI | GGNNCC | 1 cut(s) | 423 |
| BmrFI | CCNGG | 2 cut(s) | 333, 489 |
| BmsI | GCATC | 1 cut(s) | 439 |
| BpiI | GAAGAC | 1 cut(s) | 239 |
| Bpu10I | CCTNAGC | 1 cut(s) | 477 |
| BpuEI | CTTGAG | 2 cut(s) | 325, 671 |
| BpuMI | CCSGG | 1 cut(s) | 333 |
| BsaAI | YACGTR | 1 cut(s) | 161 |
| BsaBI | GATNNNNATC | 1 cut(s) | 42 |
| BsaI | GGTCTC | 1 cut(s) | 405 |
| BsaJI | CCNNGG | 5 cut(s) | 395, 425, 446, 488, 707 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 125 |
| Bse3DI | GCAATG | 2 cut(s) | 92, 113 |
| Bse8I | GATNNNNATC | 1 cut(s) | 42 |
| BseBI | CCWGG | 1 cut(s) | 489 |
| BseDI | CCNNGG | 5 cut(s) | 395, 425, 446, 488, 707 |
| BseGI | GGATG | 1 cut(s) | 430 |
| BseJI | GATNNNNATC | 1 cut(s) | 42 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 125 |
| BseMI | GCAATG | 2 cut(s) | 92, 113 |
| BseRI | GAGGAG | 1 cut(s) | 165 |
| BseXI | GCAGC | 1 cut(s) | 304 |
| Bsh1285I | CGRYCG | 1 cut(s) | 553 |
| BshFI | GGCC | 2 cut(s) | 493, 712 |
| BsiEI | CGRYCG | 1 cut(s) | 553 |
| BsiSI | CCGG | 1 cut(s) | 333 |
| BslFI | GGGAC | 1 cut(s) | 121 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 125 |
| BsmAI | GTCTC | 2 cut(s) | 61, 405 |
| BsmFI | GGGAC | 1 cut(s) | 121 |
| BsnI | GGCC | 2 cut(s) | 493, 712 |
| Bso31I | GGTCTC | 1 cut(s) | 405 |
| Bsp143I | GATC | 2 cut(s) | 43, 752 |
| Bsp19I | CCATGG | 3 cut(s) | 425, 446, 707 |
| BspANI | GGCC | 2 cut(s) | 493, 712 |
| BspLI | GGNNCC | 1 cut(s) | 423 |
| BspTNI | GGTCTC | 1 cut(s) | 405 |
| BsrDI | GCAATG | 2 cut(s) | 92, 113 |
| BssECI | CCNNGG | 5 cut(s) | 395, 425, 446, 488, 707 |
| BssMI | GATC | 2 cut(s) | 43, 752 |
| BssT1I | CCWWGG | 4 cut(s) | 395, 425, 446, 707 |
| Bst2UI | CCWGG | 1 cut(s) | 489 |
| Bst6I | CTCTTC | 2 cut(s) | 694, 720 |
| BstBAI | YACGTR | 1 cut(s) | 161 |
| BstC8I | GCNNGC | 1 cut(s) | 679 |
| BstDEI | CTNAG | 2 cut(s) | 477, 837 |
| BstDSI | CCRYGG | 3 cut(s) | 425, 446, 707 |
| BstEII | GGTNACC | 1 cut(s) | 563 |
| BstF5I | GGATG | 1 cut(s) | 430 |
| BstH2I | RGCGCY | 1 cut(s) | 640 |
| BstHHI | GCGC | 1 cut(s) | 639 |
| BstKTI | GATC | 2 cut(s) | 46, 755 |
| BstMAI | GTCTC | 2 cut(s) | 61, 405 |
| BstMBI | GATC | 2 cut(s) | 43, 752 |
| BstMCI | CGRYCG | 1 cut(s) | 553 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 581 |
| BstNI | CCWGG | 1 cut(s) | 489 |
| BstNSI | RCATGY | 5 cut(s) | 80, 99, 240, 331, 681 |
| BstPI | GGTNACC | 1 cut(s) | 563 |
| BstSCI | CCNGG | 2 cut(s) | 331, 487 |
| BstSFI | CTRYAG | 1 cut(s) | 495 |
| BstV1I | GCAGC | 1 cut(s) | 304 |
| BstV2I | GAAGAC | 1 cut(s) | 239 |
| BsuRI | GGCC | 2 cut(s) | 493, 712 |
| BtgI | CCRYGG | 3 cut(s) | 425, 446, 707 |
| BtsCI | GGATG | 1 cut(s) | 430 |
| BtsI | GCAGTG | 1 cut(s) | 405 |
| BtsIMutI | CAGTG | 1 cut(s) | 405 |
| Cac8I | GCNNGC | 1 cut(s) | 679 |
| CfoI | GCGC | 1 cut(s) | 639 |
| Cfr13I | GGNCC | 1 cut(s) | 491 |
| DdeI | CTNAG | 2 cut(s) | 477, 837 |
| DpnI | GATC | 2 cut(s) | 45, 754 |
| DpnII | GATC | 2 cut(s) | 43, 752 |
| Eam1104I | CTCTTC | 2 cut(s) | 694, 720 |
| EarI | CTCTTC | 2 cut(s) | 694, 720 |
| Eco130I | CCWWGG | 4 cut(s) | 395, 425, 446, 707 |
| Eco31I | GGTCTC | 1 cut(s) | 405 |
| Eco91I | GGTNACC | 1 cut(s) | 563 |
| EcoO65I | GGTNACC | 1 cut(s) | 563 |
| EcoRII | CCWGG | 1 cut(s) | 487 |
| EcoT14I | CCWWGG | 4 cut(s) | 395, 425, 446, 707 |
| EcoT22I | ATGCAT | 1 cut(s) | 683 |
| ErhI | CCWWGG | 4 cut(s) | 395, 425, 446, 707 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 291, 323 |
| FaqI | GGGAC | 1 cut(s) | 121 |
| Fnu4HI | GCNGC | 1 cut(s) | 318 |
| FokI | GGATG | 1 cut(s) | 417 |
| Fsp4HI | GCNGC | 1 cut(s) | 318 |
| FspBI | CTAG | 2 cut(s) | 560, 666 |
| GlaI | GCGC | 1 cut(s) | 638 |
| GluI | GCNGC | 1 cut(s) | 318 |
| HaeII | RGCGCY | 1 cut(s) | 640 |
| HaeIII | GGCC | 2 cut(s) | 493, 712 |
| HapII | CCGG | 1 cut(s) | 333 |
| HhaI | GCGC | 1 cut(s) | 639 |
| Hin6I | GCGC | 1 cut(s) | 637 |
| HinP1I | GCGC | 1 cut(s) | 637 |
| HindIII | AAGCTT | 1 cut(s) | 300 |
| HinfI | GANTC | 2 cut(s) | 38, 659 |
| HpaII | CCGG | 1 cut(s) | 333 |
| Hpy166II | GTNNAC | 1 cut(s) | 294 |
| Hpy188I | TCNGA | 2 cut(s) | 43, 752 |
| Hpy188III | TCNNGA | 2 cut(s) | 414, 785 |
| Hpy8I | GTNNAC | 1 cut(s) | 294 |
| HpyAV | CCTTC | 5 cut(s) | 129, 279, 586, 706, 782 |
| HpyCH4IV | ACGT | 1 cut(s) | 160 |
| HpyCH4V | TGCA | 6 cut(s) | 63, 240, 677, 681, 725, 803 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 581 |
| HpyF3I | CTNAG | 2 cut(s) | 477, 837 |
| HpySE526I | ACGT | 1 cut(s) | 160 |
| HspAI | GCGC | 1 cut(s) | 637 |
| Kzo9I | GATC | 2 cut(s) | 43, 752 |
| LmnI | GCTCC | 2 cut(s) | 271, 325 |
| LpnPI | CCDG | 4 cut(s) | 346, 474, 501, 507 |
| Lsp1109I | GCAGC | 1 cut(s) | 304 |
| LweI | GCATC | 1 cut(s) | 439 |
| MaeI | CTAG | 2 cut(s) | 560, 666 |
| MaeII | ACGT | 1 cut(s) | 160 |
| MaeIII | GTNAC | 2 cut(s) | 335, 563 |
| MalI | GATC | 2 cut(s) | 45, 754 |
| MboI | GATC | 2 cut(s) | 43, 752 |
| MboII | GAAGA | 7 cut(s) | 244, 571, 681, 684, 707, 773, 825 |
| MluCI | AATT | 4 cut(s) | 139, 361, 587, 733 |
| MnlI | CCTC | 4 cut(s) | 28, 186, 697, 723 |
| Mph1103I | ATGCAT | 1 cut(s) | 683 |
| MseI | TTAA | 6 cut(s) | 218, 453, 459, 590, 624, 731 |
| MslI | CAYNNNNRTG | 1 cut(s) | 342 |
| MspI | CCGG | 1 cut(s) | 333 |
| MspR9I | CCNGG | 2 cut(s) | 333, 489 |
| MvaI | CCWGG | 1 cut(s) | 489 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 581 |
| NciI | CCSGG | 1 cut(s) | 333 |
| NcoI | CCATGG | 3 cut(s) | 425, 446, 707 |
| NdeII | GATC | 2 cut(s) | 43, 752 |
| NlaIV | GGNNCC | 1 cut(s) | 423 |
| NmuCI | GTSAC | 1 cut(s) | 335 |
| NsiI | ATGCAT | 1 cut(s) | 683 |
| NspI | RCATGY | 5 cut(s) | 80, 99, 240, 331, 681 |
| OliI | CACNNNNGTG | 1 cut(s) | 342 |
| PaeI | GCATGC | 1 cut(s) | 681 |
| PciI | ACATGT | 1 cut(s) | 76 |
| PfeI | GAWTC | 2 cut(s) | 38, 659 |
| PkrI | GCNGC | 1 cut(s) | 319 |
| Ppu21I | YACGTR | 1 cut(s) | 161 |
| PscI | ACATGT | 1 cut(s) | 76 |
| PshBI | ATTAAT | 1 cut(s) | 590 |
| Psp6I | CCWGG | 1 cut(s) | 487 |
| PspEI | GGTNACC | 1 cut(s) | 563 |
| PspGI | CCWGG | 1 cut(s) | 487 |
| PspN4I | GGNNCC | 1 cut(s) | 423 |
| PspPI | GGNCC | 1 cut(s) | 491 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 154, 186 |
| RseI | CAYNNNNRTG | 1 cut(s) | 342 |
| SaqAI | TTAA | 6 cut(s) | 218, 453, 459, 590, 624, 731 |
| SatI | GCNGC | 1 cut(s) | 318 |
| Sau3AI | GATC | 2 cut(s) | 43, 752 |
| Sau96I | GGNCC | 1 cut(s) | 491 |
| ScrFI | CCNGG | 2 cut(s) | 333, 489 |
| SetI | ASST | 9 cut(s) | 15, 68, 163, 268, 304, 401, 502, 565, 689 |
| SfaNI | GCATC | 1 cut(s) | 439 |
| SfcI | CTRYAG | 1 cut(s) | 495 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 342 |
| SmlI | CTYRAG | 2 cut(s) | 340, 650 |
| SmoI | CTYRAG | 2 cut(s) | 340, 650 |
| SphI | GCATGC | 1 cut(s) | 681 |
| Sse9I | AATT | 4 cut(s) | 139, 361, 587, 733 |
| SspI | AATATT | 2 cut(s) | 189, 463 |
| SspMI | CTAG | 2 cut(s) | 560, 666 |
| StyD4I | CCNGG | 2 cut(s) | 331, 487 |
| StyI | CCWWGG | 4 cut(s) | 395, 425, 446, 707 |
| TaiI | ACGT | 1 cut(s) | 163 |
| TaqI | TCGA | 1 cut(s) | 194 |
| TaqII | GACCGA | 1 cut(s) | 539 |
| TasI | AATT | 4 cut(s) | 139, 361, 587, 733 |
| TfiI | GAWTC | 2 cut(s) | 38, 659 |
| Tru1I | TTAA | 6 cut(s) | 218, 453, 459, 590, 624, 731 |
| Tru9I | TTAA | 6 cut(s) | 218, 453, 459, 590, 624, 731 |
| TscAI | CASTG | 1 cut(s) | 412 |
| TseFI | GTSAC | 1 cut(s) | 335 |
| TseI | GCWGC | 1 cut(s) | 317 |
| Tsp45I | GTSAC | 1 cut(s) | 335 |
| TspDTI | ATGAA | 1 cut(s) | 102 |
| TspRI | CASTG | 1 cut(s) | 412 |
| VspI | ATTAAT | 1 cut(s) | 590 |
| XceI | RCATGY | 5 cut(s) | 80, 99, 240, 331, 681 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 444 |
| XspI | CTAG | 2 cut(s) | 560, 666 |
| Zsp2I | ATGCAT | 1 cut(s) | 683 |