ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF3774 | PF12609 | 17 - 92 | 1.5e-14 | Wound-induced protein |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 94 |
| AccI | GTMKAC | 1 cut(s) | 86 |
| AccII | CGCG | 1 cut(s) | 17 |
| AciI | CCGC | 1 cut(s) | 160 |
| AfaI | GTAC | 3 cut(s) | 14, 32, 257 |
| AflII | CTTAAG | 1 cut(s) | 221 |
| AgsI | TTSAA | 1 cut(s) | 183 |
| AjnI | CCWGG | 2 cut(s) | 33, 60 |
| AluBI | AGCT | 6 cut(s) | 6, 73, 113, 122, 220, 264 |
| AluI | AGCT | 6 cut(s) | 6, 73, 113, 122, 220, 264 |
| Alw26I | GTCTC | 2 cut(s) | 102, 243 |
| AoxI | GGCC | 2 cut(s) | 63, 204 |
| ApeKI | GCWGC | 2 cut(s) | 122, 264 |
| AspS9I | GGNCC | 3 cut(s) | 64, 246, 272 |
| AsuHPI | GGTGA | 1 cut(s) | 61 |
| AsuII | TTCGAA | 1 cut(s) | 143 |
| AvaII | GGWCC | 2 cut(s) | 246, 272 |
| BbsI | GAAGAC | 1 cut(s) | 132 |
| BbvCI | CCTCAGC | 1 cut(s) | 118 |
| BbvI | GCAGC | 2 cut(s) | 109, 251 |
| BciT130I | CCWGG | 2 cut(s) | 35, 62 |
| BcoDI | GTCTC | 2 cut(s) | 102, 243 |
| BfrI | CTTAAG | 1 cut(s) | 221 |
| BisI | GCNGC | 2 cut(s) | 123, 265 |
| BlsI | GCNGC | 2 cut(s) | 124, 266 |
| Bme1390I | CCNGG | 2 cut(s) | 35, 62 |
| Bme18I | GGWCC | 2 cut(s) | 246, 272 |
| BmgT120I | GGNCC | 3 cut(s) | 64, 246, 272 |
| BmiI | GGNNCC | 2 cut(s) | 66, 273 |
| BmrFI | CCNGG | 2 cut(s) | 35, 62 |
| BpiI | GAAGAC | 1 cut(s) | 132 |
| Bpu10I | CCTNAGC | 1 cut(s) | 118 |
| Bpu14I | TTCGAA | 1 cut(s) | 143 |
| BpuEI | CTTGAG | 2 cut(s) | 28, 280 |
| BseBI | CCWGG | 2 cut(s) | 35, 62 |
| BseGI | GGATG | 1 cut(s) | 48 |
| BseMII | CTCAG | 3 cut(s) | 115, 132, 233 |
| BseRI | GAGGAG | 1 cut(s) | 248 |
| BseXI | GCAGC | 2 cut(s) | 109, 251 |
| BseYI | CCCAGC | 1 cut(s) | 267 |
| Bsh1236I | CGCG | 1 cut(s) | 17 |
| Bsh1285I | CGRYCG | 1 cut(s) | 90 |
| BshFI | GGCC | 2 cut(s) | 65, 206 |
| BsiEI | CGRYCG | 1 cut(s) | 90 |
| BsmAI | GTCTC | 2 cut(s) | 102, 243 |
| BsmI | GAATGC | 1 cut(s) | 232 |
| BsnI | GGCC | 2 cut(s) | 65, 206 |
| Bsp119I | TTCGAA | 1 cut(s) | 143 |
| BspACI | CCGC | 1 cut(s) | 160 |
| BspANI | GGCC | 2 cut(s) | 65, 206 |
| BspCNI | CTCAG | 3 cut(s) | 114, 131, 234 |
| BspFNI | CGCG | 1 cut(s) | 17 |
| BspLI | GGNNCC | 2 cut(s) | 66, 273 |
| BspT104I | TTCGAA | 1 cut(s) | 143 |
| BspTI | CTTAAG | 1 cut(s) | 221 |
| Bst2UI | CCWGG | 2 cut(s) | 35, 62 |
| Bst4CI | ACNGT | 2 cut(s) | 91, 250 |
| BstAFI | CTTAAG | 1 cut(s) | 221 |
| BstBI | TTCGAA | 1 cut(s) | 143 |
| BstC8I | GCNNGC | 1 cut(s) | 19 |
| BstDEI | CTNAG | 4 cut(s) | 74, 101, 118, 242 |
| BstF5I | GGATG | 1 cut(s) | 48 |
| BstFNI | CGCG | 1 cut(s) | 17 |
| BstMAI | GTCTC | 2 cut(s) | 102, 243 |
| BstMCI | CGRYCG | 1 cut(s) | 90 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 119 |
| BstNI | CCWGG | 2 cut(s) | 35, 62 |
| BstSCI | CCNGG | 2 cut(s) | 33, 60 |
| BstUI | CGCG | 1 cut(s) | 17 |
| BstV1I | GCAGC | 2 cut(s) | 109, 251 |
| BstV2I | GAAGAC | 1 cut(s) | 132 |
| BsuRI | GGCC | 2 cut(s) | 65, 206 |
| BtsCI | GGATG | 1 cut(s) | 48 |
| Cac8I | GCNNGC | 1 cut(s) | 19 |
| Cfr13I | GGNCC | 3 cut(s) | 64, 246, 272 |
| Csp6I | GTAC | 3 cut(s) | 13, 31, 256 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 58, 93 |
| CviAII | CATG | 1 cut(s) | 253 |
| CviJI | RGCY | 8 cut(s) | 6, 65, 73, 113, 122, 206, 220, 264 |
| CviKI_1 | RGCY | 8 cut(s) | 6, 65, 73, 113, 122, 206, 220, 264 |
| CviQI | GTAC | 3 cut(s) | 13, 31, 256 |
| DdeI | CTNAG | 4 cut(s) | 74, 101, 118, 242 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 94 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 94 |
| Eco47I | GGWCC | 2 cut(s) | 246, 272 |
| EcoO109I | RGGNCCY | 1 cut(s) | 64 |
| EcoRII | CCWGG | 2 cut(s) | 33, 60 |
| FaeI | CATG | 1 cut(s) | 256 |
| FaiI | YATR | 1 cut(s) | 254 |
| FatI | CATG | 1 cut(s) | 252 |
| FblI | GTMKAC | 1 cut(s) | 86 |
| Fnu4HI | GCNGC | 2 cut(s) | 123, 265 |
| FokI | GGATG | 1 cut(s) | 55 |
| Fsp4HI | GCNGC | 2 cut(s) | 123, 265 |
| GluI | GCNGC | 2 cut(s) | 123, 265 |
| GsaI | CCCAGC | 1 cut(s) | 271 |
| HaeIII | GGCC | 2 cut(s) | 65, 206 |
| Hin1II | CATG | 1 cut(s) | 256 |
| HincII | GTYRAC | 1 cut(s) | 87 |
| HindII | GTYRAC | 1 cut(s) | 87 |
| HindIII | AAGCTT | 1 cut(s) | 218 |
| HinfI | GANTC | 4 cut(s) | 83, 107, 179, 236 |
| HphI | GGTGA | 1 cut(s) | 61 |
| Hpy166II | GTNNAC | 1 cut(s) | 87 |
| Hpy188I | TCNGA | 2 cut(s) | 243, 276 |
| Hpy8I | GTNNAC | 1 cut(s) | 87 |
| Hpy99I | CGWCG | 1 cut(s) | 139 |
| HpyCH4III | ACNGT | 2 cut(s) | 91, 250 |
| HpyCH4V | TGCA | 1 cut(s) | 230 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 119 |
| HpyF3I | CTNAG | 4 cut(s) | 74, 101, 118, 242 |
| Hsp92II | CATG | 1 cut(s) | 256 |
| LpnPI | CCDG | 7 cut(s) | 20, 24, 47, 47, 74, 88, 253 |
| Lsp1109I | GCAGC | 2 cut(s) | 109, 251 |
| MaeIII | GTNAC | 2 cut(s) | 147, 169 |
| MboII | GAAGA | 3 cut(s) | 120, 123, 132 |
| MluCI | AATT | 1 cut(s) | 277 |
| MlyI | GAGTC | 2 cut(s) | 92, 245 |
| MnlI | CCTC | 7 cut(s) | 3, 39, 127, 150, 196, 226, 237 |
| MseI | TTAA | 4 cut(s) | 93, 198, 222, 280 |
| MspA1I | CMGCKG | 1 cut(s) | 122 |
| MspCI | CTTAAG | 1 cut(s) | 221 |
| MspR9I | CCNGG | 2 cut(s) | 35, 62 |
| Mva1269I | GAATGC | 1 cut(s) | 232 |
| MvaI | CCWGG | 2 cut(s) | 35, 62 |
| MvnI | CGCG | 1 cut(s) | 17 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 119 |
| NlaIII | CATG | 1 cut(s) | 256 |
| NlaIV | GGNNCC | 2 cut(s) | 66, 273 |
| NspV | TTCGAA | 1 cut(s) | 143 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 140 |
| PctI | GAATGC | 1 cut(s) | 232 |
| PfeI | GAWTC | 2 cut(s) | 107, 179 |
| PkrI | GCNGC | 2 cut(s) | 124, 266 |
| PleI | GAGTC | 2 cut(s) | 91, 244 |
| PpsI | GAGTC | 2 cut(s) | 91, 244 |
| Psp6I | CCWGG | 2 cut(s) | 33, 60 |
| PspFI | CCCAGC | 1 cut(s) | 267 |
| PspGI | CCWGG | 2 cut(s) | 33, 60 |
| PspN4I | GGNNCC | 2 cut(s) | 66, 273 |
| PspPI | GGNCC | 3 cut(s) | 64, 246, 272 |
| PvuII | CAGCTG | 1 cut(s) | 122 |
| RsaI | GTAC | 3 cut(s) | 14, 32, 257 |
| RsaNI | GTAC | 3 cut(s) | 13, 31, 256 |
| SalI | GTCGAC | 1 cut(s) | 85 |
| SaqAI | TTAA | 4 cut(s) | 93, 198, 222, 280 |
| SatI | GCNGC | 2 cut(s) | 123, 265 |
| Sau96I | GGNCC | 3 cut(s) | 64, 246, 272 |
| SchI | GAGTC | 2 cut(s) | 92, 245 |
| ScrFI | CCNGG | 2 cut(s) | 35, 62 |
| SetI | ASST | 7 cut(s) | 8, 14, 75, 115, 124, 222, 266 |
| SfuI | TTCGAA | 1 cut(s) | 143 |
| SinI | GGWCC | 2 cut(s) | 246, 272 |
| SmlI | CTYRAG | 3 cut(s) | 7, 221, 259 |
| SmoI | CTYRAG | 3 cut(s) | 7, 221, 259 |
| Sse9I | AATT | 1 cut(s) | 277 |
| SsiI | CCGC | 1 cut(s) | 160 |
| StyD4I | CCNGG | 2 cut(s) | 33, 60 |
| TaaI | ACNGT | 2 cut(s) | 91, 250 |
| TaqI | TCGA | 2 cut(s) | 86, 143 |
| TasI | AATT | 1 cut(s) | 277 |
| TatI | WGTACW | 1 cut(s) | 255 |
| TfiI | GAWTC | 2 cut(s) | 107, 179 |
| Tru1I | TTAA | 4 cut(s) | 93, 198, 222, 280 |
| Tru9I | TTAA | 4 cut(s) | 93, 198, 222, 280 |
| TseI | GCWGC | 2 cut(s) | 122, 264 |
| TspDTI | ATGAA | 1 cut(s) | 68 |
| Vha464I | CTTAAG | 1 cut(s) | 221 |
| VpaK11BI | GGWCC | 2 cut(s) | 246, 272 |
| XmiI | GTMKAC | 1 cut(s) | 86 |