Reverse transcriptase (RNA-dependent DNA polymerase)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_1 | PF00078 | 383 - 477 | 3.5e-07 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 105 |
| AccB1I | GGYRCC | 1 cut(s) | 164 |
| AccI | GTMKAC | 1 cut(s) | 196 |
| AccIII | TCCGGA | 1 cut(s) | 1015 |
| AciI | CCGC | 4 cut(s) | 120, 226, 490, 1421 |
| AclWI | GGATC | 4 cut(s) | 806, 819, 989, 1002 |
| AcsI | RAATTY | 3 cut(s) | 571, 643, 688 |
| AcuI | CTGAAG | 2 cut(s) | 588, 1313 |
| AfaI | GTAC | 3 cut(s) | 442, 534, 1453 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1015 |
| AgsI | TTSAA | 8 cut(s) | 377, 638, 693, 827, 1131, 1146, 1228, 1361 |
| AjnI | CCWGG | 5 cut(s) | 199, 249, 266, 297, 1009 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 238, 270 |
| AleI | CACNNNNGTG | 1 cut(s) | 188 |
| AluBI | AGCT | 3 cut(s) | 223, 1111, 1393 |
| AluI | AGCT | 3 cut(s) | 223, 1111, 1393 |
| Alw21I | GWGCWC | 2 cut(s) | 127, 1375 |
| Alw26I | GTCTC | 1 cut(s) | 1048 |
| AlwI | GGATC | 4 cut(s) | 806, 819, 989, 1002 |
| Aor13HI | TCCGGA | 1 cut(s) | 1015 |
| AoxI | GGCC | 2 cut(s) | 352, 1183 |
| ApeKI | GCWGC | 1 cut(s) | 223 |
| ApoI | RAATTY | 3 cut(s) | 571, 643, 688 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 189, 221 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 153, 1365 |
| AspLEI | GCGC | 1 cut(s) | 106 |
| AspS9I | GGNCC | 5 cut(s) | 62, 352, 718, 1013, 1183 |
| AsuHPI | GGTGA | 5 cut(s) | 92, 539, 884, 1076, 1417 |
| AsuNHI | GCTAGC | 1 cut(s) | 938 |
| AvaII | GGWCC | 3 cut(s) | 62, 718, 1013 |
| BaeGI | GKGCMC | 2 cut(s) | 167, 1009 |
| BamHI | GGATCC | 2 cut(s) | 811, 994 |
| BanI | GGYRCC | 1 cut(s) | 164 |
| BbsI | GAAGAC | 1 cut(s) | 336 |
| Bbv12I | GWGCWC | 2 cut(s) | 127, 1375 |
| BbvI | GCAGC | 1 cut(s) | 210 |
| BccI | CCATC | 4 cut(s) | 696, 785, 869, 1013 |
| BceAI | ACGGC | 1 cut(s) | 1170 |
| BciT130I | CCWGG | 5 cut(s) | 201, 251, 268, 299, 1011 |
| BclI | TGATCA | 1 cut(s) | 310 |
| BcoDI | GTCTC | 1 cut(s) | 1048 |
| BfaI | CTAG | 3 cut(s) | 939, 1002, 1208 |
| BisI | GCNGC | 1 cut(s) | 224 |
| BlsI | GCNGC | 1 cut(s) | 225 |
| Bme1390I | CCNGG | 5 cut(s) | 201, 251, 268, 299, 1011 |
| Bme18I | GGWCC | 3 cut(s) | 62, 718, 1013 |
| BmgT120I | GGNCC | 5 cut(s) | 62, 352, 718, 1013, 1183 |
| BmiI | GGNNCC | 5 cut(s) | 166, 353, 719, 813, 996 |
| BmrFI | CCNGG | 5 cut(s) | 201, 251, 268, 299, 1011 |
| BmsI | GCATC | 3 cut(s) | 538, 648, 1212 |
| BmtI | GCTAGC | 1 cut(s) | 942 |
| BpiI | GAAGAC | 1 cut(s) | 336 |
| BpmI | CTGGAG | 1 cut(s) | 111 |
| BpuEI | CTTGAG | 2 cut(s) | 410, 852 |
| Bsa29I | ATCGAT | 1 cut(s) | 773 |
| BsaBI | GATNNNNATC | 2 cut(s) | 12, 315 |
| BsaJI | CCNNGG | 7 cut(s) | 65, 168, 200, 267, 297, 915, 1009 |
| BsaWI | WCCGGW | 1 cut(s) | 1015 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 212, 242 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1015 |
| Bse1I | ACTGG | 1 cut(s) | 156 |
| Bse3DI | GCAATG | 3 cut(s) | 138, 750, 1264 |
| Bse8I | GATNNNNATC | 2 cut(s) | 12, 315 |
| BseAI | TCCGGA | 1 cut(s) | 1015 |
| BseBI | CCWGG | 5 cut(s) | 201, 251, 268, 299, 1011 |
| BseCI | ATCGAT | 1 cut(s) | 773 |
| BseDI | CCNNGG | 7 cut(s) | 65, 168, 200, 267, 297, 915, 1009 |
| BseGI | GGATG | 6 cut(s) | 553, 796, 931, 1024, 1075, 1203 |
| BseJI | GATNNNNATC | 2 cut(s) | 12, 315 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1015 |
| BseMI | GCAATG | 3 cut(s) | 138, 750, 1264 |
| BseMII | CTCAG | 2 cut(s) | 48, 702 |
| BseNI | ACTGG | 1 cut(s) | 156 |
| BseRI | GAGGAG | 1 cut(s) | 1462 |
| BseSI | GKGCMC | 2 cut(s) | 167, 1009 |
| BseXI | GCAGC | 1 cut(s) | 210 |
| BseYI | CCCAGC | 1 cut(s) | 426 |
| BshFI | GGCC | 2 cut(s) | 354, 1185 |
| BshNI | GGYRCC | 1 cut(s) | 164 |
| BshVI | ATCGAT | 1 cut(s) | 773 |
| BsiHKAI | GWGCWC | 2 cut(s) | 127, 1375 |
| BsiSI | CCGG | 1 cut(s) | 1016 |
| BslFI | GGGAC | 4 cut(s) | 481, 731, 1067, 1322 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1015 |
| BsmAI | GTCTC | 1 cut(s) | 1048 |
| BsmFI | GGGAC | 4 cut(s) | 481, 731, 1067, 1322 |
| BsmI | GAATGC | 1 cut(s) | 940 |
| BsnI | GGCC | 2 cut(s) | 354, 1185 |
| Bsp1286I | GDGCHC | 4 cut(s) | 127, 167, 1009, 1375 |
| Bsp13I | TCCGGA | 1 cut(s) | 1015 |
| Bsp1407I | TGTACA | 1 cut(s) | 532 |
| Bsp143I | GATC | 9 cut(s) | 7, 28, 310, 774, 811, 994, 1266, 1415, 1442 |
| Bsp19I | CCATGG | 2 cut(s) | 65, 915 |
| BspACI | CCGC | 4 cut(s) | 120, 226, 490, 1421 |
| BspANI | GGCC | 2 cut(s) | 354, 1185 |
| BspCNI | CTCAG | 2 cut(s) | 47, 703 |
| BspDI | ATCGAT | 1 cut(s) | 773 |
| BspEI | TCCGGA | 1 cut(s) | 1015 |
| BspLI | GGNNCC | 5 cut(s) | 166, 353, 719, 813, 996 |
| BspOI | GCTAGC | 1 cut(s) | 942 |
| BspPI | GGATC | 4 cut(s) | 806, 819, 989, 1002 |
| BspT107I | GGYRCC | 1 cut(s) | 164 |
| BsrDI | GCAATG | 3 cut(s) | 138, 750, 1264 |
| BsrGI | TGTACA | 1 cut(s) | 532 |
| BsrI | ACTGG | 1 cut(s) | 156 |
| BssECI | CCNNGG | 7 cut(s) | 65, 168, 200, 267, 297, 915, 1009 |
| BssMI | GATC | 9 cut(s) | 7, 28, 310, 774, 811, 994, 1266, 1415, 1442 |
| BssT1I | CCWWGG | 3 cut(s) | 65, 168, 915 |
| Bst2UI | CCWGG | 5 cut(s) | 201, 251, 268, 299, 1011 |
| Bst4CI | ACNGT | 4 cut(s) | 180, 463, 504, 722 |
| Bst6I | CTCTTC | 2 cut(s) | 733, 924 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 487 |
| BstAUI | TGTACA | 1 cut(s) | 532 |
| BstC8I | GCNNGC | 2 cut(s) | 684, 940 |
| BstDEI | CTNAG | 3 cut(s) | 34, 711, 961 |
| BstDSI | CCRYGG | 2 cut(s) | 65, 915 |
| BstF5I | GGATG | 6 cut(s) | 553, 796, 931, 1024, 1075, 1203 |
| BstHHI | GCGC | 1 cut(s) | 106 |
| BstKTI | GATC | 9 cut(s) | 10, 31, 313, 777, 814, 997, 1269, 1418, 1445 |
| BstMAI | GTCTC | 1 cut(s) | 1048 |
| BstMBI | GATC | 9 cut(s) | 7, 28, 310, 774, 811, 994, 1266, 1415, 1442 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 487, 986, 1271 |
| BstNI | CCWGG | 5 cut(s) | 201, 251, 268, 299, 1011 |
| BstNSI | RCATGY | 3 cut(s) | 485, 838, 1172 |
| BstSCI | CCNGG | 5 cut(s) | 199, 249, 266, 297, 1009 |
| BstSLI | GKGCMC | 2 cut(s) | 167, 1009 |
| BstV1I | GCAGC | 1 cut(s) | 210 |
| BstV2I | GAAGAC | 1 cut(s) | 336 |
| BstX2I | RGATCY | 2 cut(s) | 811, 994 |
| BstYI | RGATCY | 2 cut(s) | 811, 994 |
| Bsu15I | ATCGAT | 1 cut(s) | 773 |
| BsuRI | GGCC | 2 cut(s) | 354, 1185 |
| BsuTUI | ATCGAT | 1 cut(s) | 773 |
| BtgI | CCRYGG | 2 cut(s) | 65, 915 |
| BtsCI | GGATG | 6 cut(s) | 553, 796, 931, 1024, 1075, 1203 |
| BtsI | GCAGTG | 2 cut(s) | 551, 1089 |
| BtsIMutI | CAGTG | 2 cut(s) | 551, 1089 |
| Cac8I | GCNNGC | 2 cut(s) | 684, 940 |
| CfoI | GCGC | 1 cut(s) | 106 |
| Cfr13I | GGNCC | 5 cut(s) | 62, 352, 718, 1013, 1183 |
| ClaI | ATCGAT | 1 cut(s) | 773 |
| CseI | GACGC | 1 cut(s) | 1076 |
| Csp6I | GTAC | 3 cut(s) | 441, 533, 1452 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 365, 400 |
| CviQI | GTAC | 3 cut(s) | 441, 533, 1452 |
| DdeI | CTNAG | 3 cut(s) | 34, 711, 961 |
| DpnI | GATC | 9 cut(s) | 9, 30, 312, 776, 813, 996, 1268, 1417, 1444 |
| DpnII | GATC | 9 cut(s) | 7, 28, 310, 774, 811, 994, 1266, 1415, 1442 |
| Eam1104I | CTCTTC | 2 cut(s) | 733, 924 |
| EarI | CTCTTC | 2 cut(s) | 733, 924 |
| Eco130I | CCWWGG | 3 cut(s) | 65, 168, 915 |
| Eco47I | GGWCC | 3 cut(s) | 62, 718, 1013 |
| Eco57I | CTGAAG | 2 cut(s) | 588, 1313 |
| EcoRII | CCWGG | 5 cut(s) | 199, 249, 266, 297, 1009 |
| EcoT14I | CCWWGG | 3 cut(s) | 65, 168, 915 |
| ErhI | CCWWGG | 3 cut(s) | 65, 168, 915 |
| FaqI | GGGAC | 4 cut(s) | 481, 731, 1067, 1322 |
| FauI | CCCGC | 1 cut(s) | 1414 |
| FbaI | TGATCA | 1 cut(s) | 310 |
| FblI | GTMKAC | 1 cut(s) | 196 |
| Fnu4HI | GCNGC | 1 cut(s) | 224 |
| FokI | GGATG | 6 cut(s) | 560, 803, 938, 1031, 1082, 1190 |
| Fsp4HI | GCNGC | 1 cut(s) | 224 |
| FspAI | RTGCGCAY | 1 cut(s) | 105 |
| FspBI | CTAG | 3 cut(s) | 939, 1002, 1208 |
| FspI | TGCGCA | 1 cut(s) | 105 |
| GlaI | GCGC | 1 cut(s) | 105 |
| GluI | GCNGC | 1 cut(s) | 224 |
| GsaI | CCCAGC | 1 cut(s) | 430 |
| GsuI | CTGGAG | 1 cut(s) | 111 |
| HaeIII | GGCC | 2 cut(s) | 354, 1185 |
| HapII | CCGG | 1 cut(s) | 1016 |
| HgaI | GACGC | 1 cut(s) | 1076 |
| HhaI | GCGC | 1 cut(s) | 106 |
| Hin6I | GCGC | 1 cut(s) | 104 |
| HinP1I | GCGC | 1 cut(s) | 104 |
| HinfI | GANTC | 8 cut(s) | 46, 263, 634, 653, 671, 853, 907, 1366 |
| HpaII | CCGG | 1 cut(s) | 1016 |
| HphI | GGTGA | 5 cut(s) | 92, 539, 884, 1076, 1417 |
| Hpy166II | GTNNAC | 4 cut(s) | 149, 183, 197, 665 |
| Hpy188I | TCNGA | 5 cut(s) | 37, 310, 607, 712, 1219 |
| Hpy188III | TCNNGA | 5 cut(s) | 693, 900, 1016, 1146, 1331 |
| Hpy8I | GTNNAC | 4 cut(s) | 149, 183, 197, 665 |
| HpyAV | CCTTC | 4 cut(s) | 921, 966, 1125, 1388 |
| HpyCH4III | ACNGT | 4 cut(s) | 180, 463, 504, 722 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 487, 986, 1271 |
| HpyF3I | CTNAG | 3 cut(s) | 34, 711, 961 |
| HspAI | GCGC | 1 cut(s) | 104 |
| Kpn2I | TCCGGA | 1 cut(s) | 1015 |
| Ksp22I | TGATCA | 1 cut(s) | 310 |
| Kzo9I | GATC | 9 cut(s) | 7, 28, 310, 774, 811, 994, 1266, 1415, 1442 |
| LmnI | GCTCC | 4 cut(s) | 130, 220, 1079, 1323 |
| Lsp1109I | GCAGC | 1 cut(s) | 210 |
| LweI | GCATC | 3 cut(s) | 538, 648, 1212 |
| MaeI | CTAG | 3 cut(s) | 939, 1002, 1208 |
| MaeIII | GTNAC | 6 cut(s) | 55, 80, 722, 878, 919, 1088 |
| MalI | GATC | 9 cut(s) | 9, 30, 312, 776, 813, 996, 1268, 1417, 1444 |
| MboI | GATC | 9 cut(s) | 7, 28, 310, 774, 811, 994, 1266, 1415, 1442 |
| MboII | GAAGA | 5 cut(s) | 124, 336, 720, 941, 1319 |
| MflI | RGATCY | 2 cut(s) | 811, 994 |
| MhlI | GDGCHC | 4 cut(s) | 127, 167, 1009, 1375 |
| MlyI | GAGTC | 2 cut(s) | 55, 662 |
| MmeI | TCCRAC | 1 cut(s) | 210 |
| MnlI | CCTC | 7 cut(s) | 107, 330, 465, 706, 802, 1060, 1440 |
| MroI | TCCGGA | 1 cut(s) | 1015 |
| MroXI | GAANNNNTTC | 2 cut(s) | 153, 1365 |
| MseI | TTAA | 6 cut(s) | 42, 87, 984, 1026, 1125, 1344 |
| MslI | CAYNNNNRTG | 1 cut(s) | 188 |
| MspA1I | CMGCKG | 1 cut(s) | 1421 |
| MspI | CCGG | 1 cut(s) | 1016 |
| MspR9I | CCNGG | 5 cut(s) | 201, 251, 268, 299, 1011 |
| Mva1269I | GAATGC | 1 cut(s) | 940 |
| MvaI | CCWGG | 5 cut(s) | 201, 251, 268, 299, 1011 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 487, 986, 1271 |
| NcoI | CCATGG | 2 cut(s) | 65, 915 |
| NdeII | GATC | 9 cut(s) | 7, 28, 310, 774, 811, 994, 1266, 1415, 1442 |
| NheI | GCTAGC | 1 cut(s) | 938 |
| NlaIV | GGNNCC | 5 cut(s) | 166, 353, 719, 813, 996 |
| NmuCI | GTSAC | 3 cut(s) | 55, 80, 1088 |
| NsbI | TGCGCA | 1 cut(s) | 105 |
| NspI | RCATGY | 3 cut(s) | 485, 838, 1172 |
| OliI | CACNNNNGTG | 1 cut(s) | 188 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1451 |
| PctI | GAATGC | 1 cut(s) | 940 |
| PdmI | GAANNNNTTC | 2 cut(s) | 153, 1365 |
| PfeI | GAWTC | 6 cut(s) | 263, 634, 671, 853, 907, 1366 |
| PflFI | GACNNNGTC | 1 cut(s) | 360 |
| PkrI | GCNGC | 1 cut(s) | 225 |
| PleI | GAGTC | 2 cut(s) | 54, 661 |
| PpsI | GAGTC | 2 cut(s) | 54, 661 |
| Psp6I | CCWGG | 5 cut(s) | 199, 249, 266, 297, 1009 |
| PspFI | CCCAGC | 1 cut(s) | 426 |
| PspGI | CCWGG | 5 cut(s) | 199, 249, 266, 297, 1009 |
| PspN4I | GGNNCC | 5 cut(s) | 166, 353, 719, 813, 996 |
| PspPI | GGNCC | 5 cut(s) | 62, 352, 718, 1013, 1183 |
| PsuI | RGATCY | 2 cut(s) | 811, 994 |
| PsyI | GACNNNGTC | 1 cut(s) | 360 |
| RsaI | GTAC | 3 cut(s) | 442, 534, 1453 |
| RsaNI | GTAC | 3 cut(s) | 441, 533, 1452 |
| RseI | CAYNNNNRTG | 1 cut(s) | 188 |
| SaqAI | TTAA | 6 cut(s) | 42, 87, 984, 1026, 1125, 1344 |
| SatI | GCNGC | 1 cut(s) | 224 |
| Sau3AI | GATC | 9 cut(s) | 7, 28, 310, 774, 811, 994, 1266, 1415, 1442 |
| Sau96I | GGNCC | 5 cut(s) | 62, 352, 718, 1013, 1183 |
| SchI | GAGTC | 2 cut(s) | 55, 662 |
| ScrFI | CCNGG | 5 cut(s) | 201, 251, 268, 299, 1011 |
| SduI | GDGCHC | 4 cut(s) | 127, 167, 1009, 1375 |
| SfaNI | GCATC | 3 cut(s) | 538, 648, 1212 |
| SinI | GGWCC | 3 cut(s) | 62, 718, 1013 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 188 |
| SmlI | CTYRAG | 2 cut(s) | 389, 867 |
| SmoI | CTYRAG | 2 cut(s) | 389, 867 |
| SsiI | CCGC | 4 cut(s) | 120, 226, 490, 1421 |
| SspI | AATATT | 2 cut(s) | 142, 1192 |
| SspMI | CTAG | 3 cut(s) | 939, 1002, 1208 |
| StyD4I | CCNGG | 5 cut(s) | 199, 249, 266, 297, 1009 |
| StyI | CCWWGG | 3 cut(s) | 65, 168, 915 |
| TaaI | ACNGT | 4 cut(s) | 180, 463, 504, 722 |
| TaqI | TCGA | 5 cut(s) | 10, 612, 656, 773, 1445 |
| TatI | WGTACW | 1 cut(s) | 532 |
| TfiI | GAWTC | 6 cut(s) | 263, 634, 671, 853, 907, 1366 |
| Tru1I | TTAA | 6 cut(s) | 42, 87, 984, 1026, 1125, 1344 |
| Tru9I | TTAA | 6 cut(s) | 42, 87, 984, 1026, 1125, 1344 |
| TscAI | CASTG | 2 cut(s) | 558, 1089 |
| TseFI | GTSAC | 3 cut(s) | 55, 80, 1088 |
| TseI | GCWGC | 1 cut(s) | 223 |
| Tsp45I | GTSAC | 3 cut(s) | 55, 80, 1088 |
| TspDTI | ATGAA | 8 cut(s) | 146, 720, 728, 786, 866, 942, 1107, 1370 |
| TspGWI | ACGGA | 2 cut(s) | 938, 1211 |
| TspRI | CASTG | 2 cut(s) | 558, 1089 |
| Tth111I | GACNNNGTC | 1 cut(s) | 360 |
| VpaK11BI | GGWCC | 3 cut(s) | 62, 718, 1013 |
| XapI | RAATTY | 3 cut(s) | 571, 643, 688 |
| XceI | RCATGY | 3 cut(s) | 485, 838, 1172 |
| XmiI | GTMKAC | 1 cut(s) | 196 |
| XmnI | GAANNNNTTC | 2 cut(s) | 153, 1365 |
| XspI | CTAG | 3 cut(s) | 939, 1002, 1208 |