ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_1 | PF00078 | 3 - 121 | 1.5e-08 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 43 |
| AccI | GTMKAC | 2 cut(s) | 37, 126 |
| AccII | CGCG | 1 cut(s) | 271 |
| AciI | CCGC | 1 cut(s) | 269 |
| AcsI | RAATTY | 1 cut(s) | 160 |
| AcyI | GRCGYC | 1 cut(s) | 40 |
| AfaI | GTAC | 1 cut(s) | 300 |
| AgsI | TTSAA | 1 cut(s) | 79 |
| AjnI | CCWGG | 1 cut(s) | 291 |
| AluBI | AGCT | 4 cut(s) | 140, 239, 350, 407 |
| AluI | AGCT | 4 cut(s) | 140, 239, 350, 407 |
| ApoI | RAATTY | 1 cut(s) | 160 |
| AsuHPI | GGTGA | 1 cut(s) | 320 |
| BceAI | ACGGC | 1 cut(s) | 36 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 106, 140 |
| BciT130I | CCWGG | 1 cut(s) | 293 |
| BfaI | CTAG | 5 cut(s) | 62, 183, 198, 338, 384 |
| Bme1390I | CCNGG | 1 cut(s) | 293 |
| BmrFI | CCNGG | 1 cut(s) | 293 |
| BsaHI | GRCGYC | 1 cut(s) | 40 |
| BsaJI | CCNNGG | 1 cut(s) | 291 |
| Bse1I | ACTGG | 1 cut(s) | 161 |
| Bse3DI | GCAATG | 1 cut(s) | 49 |
| BseBI | CCWGG | 1 cut(s) | 293 |
| BseDI | CCNNGG | 1 cut(s) | 291 |
| BseMI | GCAATG | 1 cut(s) | 49 |
| BseNI | ACTGG | 1 cut(s) | 161 |
| Bsh1236I | CGCG | 1 cut(s) | 271 |
| BspACI | CCGC | 1 cut(s) | 269 |
| BspFNI | CGCG | 1 cut(s) | 271 |
| BsrDI | GCAATG | 1 cut(s) | 49 |
| BsrI | ACTGG | 1 cut(s) | 161 |
| BssECI | CCNNGG | 1 cut(s) | 291 |
| BssNI | GRCGYC | 1 cut(s) | 40 |
| Bst2UI | CCWGG | 1 cut(s) | 293 |
| Bst4CI | ACNGT | 1 cut(s) | 234 |
| BstACI | GRCGYC | 1 cut(s) | 40 |
| BstC8I | GCNNGC | 1 cut(s) | 241 |
| BstEII | GGTNACC | 1 cut(s) | 308 |
| BstFNI | CGCG | 1 cut(s) | 271 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 29, 347 |
| BstNI | CCWGG | 1 cut(s) | 293 |
| BstNSI | RCATGY | 1 cut(s) | 224 |
| BstPI | GGTNACC | 1 cut(s) | 308 |
| BstSCI | CCNGG | 1 cut(s) | 291 |
| BstUI | CGCG | 1 cut(s) | 271 |
| BtgZI | GCGATG | 1 cut(s) | 115 |
| Cac8I | GCNNGC | 1 cut(s) | 241 |
| Csp6I | GTAC | 1 cut(s) | 299 |
| CviAII | CATG | 2 cut(s) | 221, 411 |
| CviJI | RGCY | 6 cut(s) | 61, 98, 140, 239, 350, 407 |
| CviKI_1 | RGCY | 6 cut(s) | 61, 98, 140, 239, 350, 407 |
| CviQI | GTAC | 1 cut(s) | 299 |
| Eco91I | GGTNACC | 1 cut(s) | 308 |
| EcoO65I | GGTNACC | 1 cut(s) | 308 |
| EcoRII | CCWGG | 1 cut(s) | 291 |
| FaeI | CATG | 2 cut(s) | 224, 414 |
| FaiI | YATR | 6 cut(s) | 86, 119, 152, 222, 266, 412 |
| FatI | CATG | 2 cut(s) | 220, 410 |
| FblI | GTMKAC | 2 cut(s) | 37, 126 |
| FspBI | CTAG | 5 cut(s) | 62, 183, 198, 338, 384 |
| Hin1I | GRCGYC | 1 cut(s) | 40 |
| Hin1II | CATG | 2 cut(s) | 224, 414 |
| HincII | GTYRAC | 1 cut(s) | 127 |
| HindII | GTYRAC | 1 cut(s) | 127 |
| HindIII | AAGCTT | 2 cut(s) | 138, 348 |
| HphI | GGTGA | 1 cut(s) | 320 |
| Hpy166II | GTNNAC | 2 cut(s) | 38, 127 |
| Hpy8I | GTNNAC | 2 cut(s) | 38, 127 |
| HpyAV | CCTTC | 1 cut(s) | 65 |
| HpyCH4III | ACNGT | 1 cut(s) | 234 |
| HpyCH4IV | ACGT | 2 cut(s) | 40, 301 |
| HpyCH4V | TGCA | 2 cut(s) | 54, 220 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 29, 347 |
| HpySE526I | ACGT | 2 cut(s) | 40, 301 |
| Hsp92I | GRCGYC | 1 cut(s) | 40 |
| Hsp92II | CATG | 2 cut(s) | 224, 414 |
| LmnI | GCTCC | 1 cut(s) | 412 |
| LpnPI | CCDG | 3 cut(s) | 142, 278, 305 |
| MaeI | CTAG | 5 cut(s) | 62, 183, 198, 338, 384 |
| MaeII | ACGT | 2 cut(s) | 40, 301 |
| MaeIII | GTNAC | 1 cut(s) | 308 |
| MboII | GAAGA | 1 cut(s) | 158 |
| MluCI | AATT | 3 cut(s) | 79, 160, 249 |
| MnlI | CCTC | 3 cut(s) | 21, 289, 324 |
| MseI | TTAA | 1 cut(s) | 248 |
| MspR9I | CCNGG | 1 cut(s) | 293 |
| MvaI | CCWGG | 1 cut(s) | 293 |
| MvnI | CGCG | 1 cut(s) | 271 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 29, 347 |
| NlaIII | CATG | 2 cut(s) | 224, 414 |
| NmuCI | GTSAC | 1 cut(s) | 308 |
| NspI | RCATGY | 1 cut(s) | 224 |
| Psp6I | CCWGG | 1 cut(s) | 291 |
| PspEI | GGTNACC | 1 cut(s) | 308 |
| PspGI | CCWGG | 1 cut(s) | 291 |
| RsaI | GTAC | 1 cut(s) | 300 |
| RsaNI | GTAC | 1 cut(s) | 299 |
| SalI | GTCGAC | 1 cut(s) | 125 |
| SaqAI | TTAA | 1 cut(s) | 248 |
| ScrFI | CCNGG | 1 cut(s) | 293 |
| SetI | ASST | 9 cut(s) | 43, 142, 241, 300, 304, 310, 352, 364, 409 |
| Sse9I | AATT | 3 cut(s) | 79, 160, 249 |
| SsiI | CCGC | 1 cut(s) | 269 |
| SspMI | CTAG | 5 cut(s) | 62, 183, 198, 338, 384 |
| StyD4I | CCNGG | 1 cut(s) | 291 |
| TaaI | ACNGT | 1 cut(s) | 234 |
| TaiI | ACGT | 2 cut(s) | 43, 304 |
| TaqI | TCGA | 1 cut(s) | 126 |
| TasI | AATT | 3 cut(s) | 79, 160, 249 |
| Tru1I | TTAA | 1 cut(s) | 248 |
| Tru9I | TTAA | 1 cut(s) | 248 |
| TseFI | GTSAC | 1 cut(s) | 308 |
| Tsp45I | GTSAC | 1 cut(s) | 308 |
| TspDTI | ATGAA | 2 cut(s) | 167, 360 |
| TspGWI | ACGGA | 1 cut(s) | 403 |
| XapI | RAATTY | 1 cut(s) | 160 |
| XceI | RCATGY | 1 cut(s) | 224 |
| XmiI | GTMKAC | 2 cut(s) | 37, 126 |
| XspI | CTAG | 5 cut(s) | 62, 183, 198, 338, 384 |
| ZraI | GACGTC | 1 cut(s) | 41 |