Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 17 - 117 | 6.1e-12 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 353 |
| AciI | CCGC | 2 cut(s) | 62, 247 |
| AcuI | CTGAAG | 1 cut(s) | 295 |
| AfaI | GTAC | 2 cut(s) | 294, 436 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 240, 289 |
| AflIII | ACRYGT | 1 cut(s) | 295 |
| AgeI | ACCGGT | 1 cut(s) | 444 |
| AgsI | TTSAA | 2 cut(s) | 185, 361 |
| AjiI | CACGTC | 1 cut(s) | 298 |
| AluBI | AGCT | 1 cut(s) | 340 |
| AluI | AGCT | 1 cut(s) | 340 |
| Alw26I | GTCTC | 2 cut(s) | 103, 304 |
| AoxI | GGCC | 1 cut(s) | 63 |
| ApeKI | GCWGC | 1 cut(s) | 244 |
| AsiGI | ACCGGT | 1 cut(s) | 444 |
| BanI | GGYRCC | 1 cut(s) | 353 |
| BbsI | GAAGAC | 1 cut(s) | 301 |
| BbvI | GCAGC | 1 cut(s) | 231 |
| BcoDI | GTCTC | 2 cut(s) | 103, 304 |
| BisI | GCNGC | 2 cut(s) | 63, 245 |
| BlsI | GCNGC | 2 cut(s) | 64, 246 |
| BmgBI | CACGTC | 1 cut(s) | 298 |
| BmiI | GGNNCC | 2 cut(s) | 170, 355 |
| BmsI | GCATC | 2 cut(s) | 49, 103 |
| BpiI | GAAGAC | 1 cut(s) | 301 |
| Bpu10I | CCTNAGC | 1 cut(s) | 93 |
| BsaI | GGTCTC | 1 cut(s) | 103 |
| BsaJI | CCNNGG | 1 cut(s) | 236 |
| BsaWI | WCCGGW | 1 cut(s) | 444 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 240, 289 |
| Bse118I | RCCGGY | 1 cut(s) | 444 |
| Bse1I | ACTGG | 1 cut(s) | 283 |
| Bse3DI | GCAATG | 2 cut(s) | 94, 260 |
| BseDI | CCNNGG | 1 cut(s) | 236 |
| BseGI | GGATG | 1 cut(s) | 264 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 240, 289 |
| BseMI | GCAATG | 2 cut(s) | 94, 260 |
| BseMII | CTCAG | 1 cut(s) | 107 |
| BseNI | ACTGG | 1 cut(s) | 283 |
| BseXI | GCAGC | 1 cut(s) | 231 |
| BshFI | GGCC | 1 cut(s) | 65 |
| BshNI | GGYRCC | 1 cut(s) | 353 |
| BshTI | ACCGGT | 1 cut(s) | 444 |
| BsiSI | CCGG | 1 cut(s) | 445 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 240, 289 |
| BsmAI | GTCTC | 2 cut(s) | 103, 304 |
| BsmBI | CGTCTC | 1 cut(s) | 304 |
| BsnI | GGCC | 1 cut(s) | 65 |
| Bso31I | GGTCTC | 1 cut(s) | 103 |
| Bsp143I | GATC | 1 cut(s) | 276 |
| BspACI | CCGC | 2 cut(s) | 62, 247 |
| BspANI | GGCC | 1 cut(s) | 65 |
| BspCNI | CTCAG | 1 cut(s) | 106 |
| BspLI | GGNNCC | 2 cut(s) | 170, 355 |
| BspT107I | GGYRCC | 1 cut(s) | 353 |
| BspTNI | GGTCTC | 1 cut(s) | 103 |
| BsrDI | GCAATG | 2 cut(s) | 94, 260 |
| BsrFI | RCCGGY | 1 cut(s) | 444 |
| BsrI | ACTGG | 1 cut(s) | 283 |
| BssAI | RCCGGY | 1 cut(s) | 444 |
| BssECI | CCNNGG | 1 cut(s) | 236 |
| BssMI | GATC | 1 cut(s) | 276 |
| Bst4CI | ACNGT | 1 cut(s) | 353 |
| BstC8I | GCNNGC | 1 cut(s) | 342 |
| BstDEI | CTNAG | 1 cut(s) | 93 |
| BstDSI | CCRYGG | 1 cut(s) | 236 |
| BstF5I | GGATG | 1 cut(s) | 264 |
| BstKTI | GATC | 1 cut(s) | 279 |
| BstMAI | GTCTC | 2 cut(s) | 103, 304 |
| BstMBI | GATC | 1 cut(s) | 276 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 113, 250 |
| BstV1I | GCAGC | 1 cut(s) | 231 |
| BstV2I | GAAGAC | 1 cut(s) | 301 |
| BsuRI | GGCC | 1 cut(s) | 65 |
| BtgI | CCRYGG | 1 cut(s) | 236 |
| BtgZI | GCGATG | 1 cut(s) | 72 |
| BtrI | CACGTC | 1 cut(s) | 298 |
| BtsCI | GGATG | 1 cut(s) | 264 |
| BtsIMutI | CAGTG | 1 cut(s) | 378 |
| Cac8I | GCNNGC | 1 cut(s) | 342 |
| Cfr10I | RCCGGY | 1 cut(s) | 444 |
| Csp6I | GTAC | 2 cut(s) | 293, 435 |
| CspAI | ACCGGT | 1 cut(s) | 444 |
| CviAII | CATG | 2 cut(s) | 225, 305 |
| CviQI | GTAC | 2 cut(s) | 293, 435 |
| DdeI | CTNAG | 1 cut(s) | 93 |
| DpnI | GATC | 1 cut(s) | 278 |
| DpnII | GATC | 1 cut(s) | 276 |
| DraI | TTTAAA | 1 cut(s) | 217 |
| Eco31I | GGTCTC | 1 cut(s) | 103 |
| Eco57I | CTGAAG | 1 cut(s) | 295 |
| Esp3I | CGTCTC | 1 cut(s) | 304 |
| FaeI | CATG | 2 cut(s) | 228, 308 |
| FaiI | YATR | 5 cut(s) | 110, 178, 197, 226, 306 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 212, 244 |
| FatI | CATG | 2 cut(s) | 224, 304 |
| FauI | CCCGC | 1 cut(s) | 240 |
| Fnu4HI | GCNGC | 2 cut(s) | 63, 245 |
| FokI | GGATG | 1 cut(s) | 271 |
| Fsp4HI | GCNGC | 2 cut(s) | 63, 245 |
| GluI | GCNGC | 2 cut(s) | 63, 245 |
| HaeIII | GGCC | 1 cut(s) | 65 |
| HapII | CCGG | 1 cut(s) | 445 |
| Hin1II | CATG | 2 cut(s) | 228, 308 |
| HinfI | GANTC | 2 cut(s) | 191, 383 |
| HpaII | CCGG | 1 cut(s) | 445 |
| Hpy166II | GTNNAC | 1 cut(s) | 295 |
| Hpy188III | TCNNGA | 3 cut(s) | 400, 419, 429 |
| Hpy8I | GTNNAC | 1 cut(s) | 295 |
| HpyAV | CCTTC | 3 cut(s) | 30, 42, 76 |
| HpyCH4III | ACNGT | 1 cut(s) | 353 |
| HpyCH4IV | ACGT | 2 cut(s) | 297, 433 |
| HpyCH4V | TGCA | 4 cut(s) | 87, 116, 253, 332 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 113, 250 |
| HpyF3I | CTNAG | 1 cut(s) | 93 |
| HpySE526I | ACGT | 2 cut(s) | 297, 433 |
| Hsp92II | CATG | 2 cut(s) | 228, 308 |
| Kzo9I | GATC | 1 cut(s) | 276 |
| LpnPI | CCDG | 8 cut(s) | 80, 151, 275, 296, 298, 326, 404, 414 |
| Lsp1109I | GCAGC | 1 cut(s) | 231 |
| LweI | GCATC | 2 cut(s) | 49, 103 |
| MaeII | ACGT | 2 cut(s) | 297, 433 |
| MalI | GATC | 1 cut(s) | 278 |
| MboI | GATC | 1 cut(s) | 276 |
| MboII | GAAGA | 2 cut(s) | 57, 301 |
| MluCI | AATT | 2 cut(s) | 141, 271 |
| MlyI | GAGTC | 1 cut(s) | 185 |
| MnlI | CCTC | 6 cut(s) | 8, 130, 155, 234, 310, 402 |
| MseI | TTAA | 5 cut(s) | 144, 216, 230, 270, 454 |
| MspI | CCGG | 1 cut(s) | 445 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 113, 250 |
| NdeII | GATC | 1 cut(s) | 276 |
| NlaIII | CATG | 2 cut(s) | 228, 308 |
| NlaIV | GGNNCC | 2 cut(s) | 170, 355 |
| PfeI | GAWTC | 1 cut(s) | 383 |
| PinAI | ACCGGT | 1 cut(s) | 444 |
| PkrI | GCNGC | 2 cut(s) | 64, 246 |
| PleI | GAGTC | 1 cut(s) | 185 |
| PpsI | GAGTC | 1 cut(s) | 185 |
| PspN4I | GGNNCC | 2 cut(s) | 170, 355 |
| RsaI | GTAC | 2 cut(s) | 294, 436 |
| RsaNI | GTAC | 2 cut(s) | 293, 435 |
| SaqAI | TTAA | 5 cut(s) | 144, 216, 230, 270, 454 |
| SatI | GCNGC | 2 cut(s) | 63, 245 |
| Sau3AI | GATC | 1 cut(s) | 276 |
| SchI | GAGTC | 1 cut(s) | 185 |
| SetI | ASST | 7 cut(s) | 99, 141, 150, 294, 300, 342, 436 |
| SfaNI | GCATC | 2 cut(s) | 49, 103 |
| Sse9I | AATT | 2 cut(s) | 141, 271 |
| SsiI | CCGC | 2 cut(s) | 62, 247 |
| TaaI | ACNGT | 1 cut(s) | 353 |
| TaiI | ACGT | 2 cut(s) | 300, 436 |
| TaqI | TCGA | 1 cut(s) | 275 |
| TasI | AATT | 2 cut(s) | 141, 271 |
| TauI | GCSGC | 1 cut(s) | 65 |
| TfiI | GAWTC | 1 cut(s) | 383 |
| Tru1I | TTAA | 5 cut(s) | 144, 216, 230, 270, 454 |
| Tru9I | TTAA | 5 cut(s) | 144, 216, 230, 270, 454 |
| TscAI | CASTG | 1 cut(s) | 378 |
| TseI | GCWGC | 1 cut(s) | 244 |
| TspDTI | ATGAA | 1 cut(s) | 275 |
| TspRI | CASTG | 1 cut(s) | 378 |