Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Homeodomain | PF00046 | 27 - 89 | 1.1e-08 | Homeodomain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 78 |
| Acc36I | ACCTGC | 2 cut(s) | 78, 160 |
| AciI | CCGC | 3 cut(s) | 82, 339, 418 |
| AclWI | GGATC | 1 cut(s) | 188 |
| AfaI | GTAC | 1 cut(s) | 203 |
| AgsI | TTSAA | 1 cut(s) | 220 |
| AleI | CACNNNNGTG | 1 cut(s) | 348 |
| AluBI | AGCT | 4 cut(s) | 130, 193, 373, 398 |
| AluI | AGCT | 4 cut(s) | 130, 193, 373, 398 |
| Alw21I | GWGCWC | 1 cut(s) | 375 |
| Alw26I | GTCTC | 1 cut(s) | 258 |
| AlwI | GGATC | 1 cut(s) | 188 |
| Ama87I | CYCGRG | 1 cut(s) | 255 |
| ApeKI | GCWGC | 1 cut(s) | 50 |
| AspS9I | GGNCC | 2 cut(s) | 153, 276 |
| AsuC2I | CCSGG | 1 cut(s) | 55 |
| AvaI | CYCGRG | 1 cut(s) | 255 |
| AvaII | GGWCC | 2 cut(s) | 153, 276 |
| BaeGI | GKGCMC | 1 cut(s) | 300 |
| BanII | GRGCYC | 1 cut(s) | 375 |
| Bbv12I | GWGCWC | 1 cut(s) | 375 |
| BbvI | GCAGC | 1 cut(s) | 62 |
| BccI | CCATC | 2 cut(s) | 26, 323 |
| BceAI | ACGGC | 1 cut(s) | 220 |
| BcnI | CCSGG | 1 cut(s) | 55 |
| BcoDI | GTCTC | 1 cut(s) | 258 |
| BfmI | CTRYAG | 2 cut(s) | 102, 162 |
| BfuAI | ACCTGC | 2 cut(s) | 78, 160 |
| BisI | GCNGC | 2 cut(s) | 51, 418 |
| BlpI | GCTNAGC | 1 cut(s) | 374 |
| BlsI | GCNGC | 2 cut(s) | 52, 419 |
| Bme1390I | CCNGG | 1 cut(s) | 55 |
| Bme18I | GGWCC | 2 cut(s) | 153, 276 |
| BmeT110I | CYCGRG | 1 cut(s) | 255 |
| BmgT120I | GGNCC | 2 cut(s) | 153, 276 |
| BmiI | GGNNCC | 3 cut(s) | 6, 155, 416 |
| BmrFI | CCNGG | 1 cut(s) | 55 |
| BmsI | GCATC | 1 cut(s) | 277 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 374 |
| BpuEI | CTTGAG | 1 cut(s) | 389 |
| BpuMI | CCSGG | 1 cut(s) | 55 |
| BsaI | GGTCTC | 1 cut(s) | 258 |
| BsaJI | CCNNGG | 1 cut(s) | 27 |
| BseDI | CCNNGG | 1 cut(s) | 27 |
| BseGI | GGATG | 2 cut(s) | 37, 292 |
| BseMII | CTCAG | 1 cut(s) | 388 |
| BseSI | GKGCMC | 1 cut(s) | 300 |
| BseXI | GCAGC | 1 cut(s) | 62 |
| BseYI | CCCAGC | 1 cut(s) | 15 |
| BsiHKAI | GWGCWC | 1 cut(s) | 375 |
| BsiHKCI | CYCGRG | 1 cut(s) | 255 |
| BsiSI | CCGG | 1 cut(s) | 54 |
| BslFI | GGGAC | 1 cut(s) | 139 |
| BsmAI | GTCTC | 1 cut(s) | 258 |
| BsmFI | GGGAC | 1 cut(s) | 139 |
| Bso31I | GGTCTC | 1 cut(s) | 258 |
| BsoBI | CYCGRG | 1 cut(s) | 255 |
| Bsp1286I | GDGCHC | 2 cut(s) | 300, 375 |
| Bsp143I | GATC | 4 cut(s) | 106, 180, 210, 308 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 374 |
| BspACI | CCGC | 3 cut(s) | 82, 339, 418 |
| BspCNI | CTCAG | 1 cut(s) | 387 |
| BspLI | GGNNCC | 3 cut(s) | 6, 155, 416 |
| BspMI | ACCTGC | 2 cut(s) | 78, 160 |
| BspPI | GGATC | 1 cut(s) | 188 |
| BspTNI | GGTCTC | 1 cut(s) | 258 |
| BssECI | CCNNGG | 1 cut(s) | 27 |
| BssMI | GATC | 4 cut(s) | 106, 180, 210, 308 |
| Bst4CI | ACNGT | 1 cut(s) | 347 |
| BstDEI | CTNAG | 1 cut(s) | 374 |
| BstF5I | GGATG | 2 cut(s) | 37, 292 |
| BstKTI | GATC | 4 cut(s) | 109, 183, 213, 311 |
| BstMAI | GTCTC | 1 cut(s) | 258 |
| BstMBI | GATC | 4 cut(s) | 106, 180, 210, 308 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 79, 384 |
| BstNSI | RCATGY | 1 cut(s) | 73 |
| BstSCI | CCNGG | 1 cut(s) | 53 |
| BstSFI | CTRYAG | 2 cut(s) | 102, 162 |
| BstSLI | GKGCMC | 1 cut(s) | 300 |
| BstV1I | GCAGC | 1 cut(s) | 62 |
| BstX2I | RGATCY | 1 cut(s) | 180 |
| BstYI | RGATCY | 1 cut(s) | 180 |
| BtsCI | GGATG | 2 cut(s) | 37, 292 |
| BveI | ACCTGC | 2 cut(s) | 78, 160 |
| Cfr13I | GGNCC | 2 cut(s) | 153, 276 |
| Csp6I | GTAC | 1 cut(s) | 202 |
| CviAII | CATG | 3 cut(s) | 70, 293, 301 |
| CviJI | RGCY | 9 cut(s) | 53, 130, 193, 316, 354, 373, 378, 398, 417 |
| CviKI_1 | RGCY | 9 cut(s) | 53, 130, 193, 316, 354, 373, 378, 398, 417 |
| CviQI | GTAC | 1 cut(s) | 202 |
| DdeI | CTNAG | 1 cut(s) | 374 |
| DpnI | GATC | 4 cut(s) | 108, 182, 212, 310 |
| DpnII | GATC | 4 cut(s) | 106, 180, 210, 308 |
| EciI | GGCGGA | 1 cut(s) | 97 |
| Ecl136II | GAGCTC | 1 cut(s) | 373 |
| Eco24I | GRGCYC | 1 cut(s) | 375 |
| Eco31I | GGTCTC | 1 cut(s) | 258 |
| Eco47I | GGWCC | 2 cut(s) | 153, 276 |
| Eco53kI | GAGCTC | 1 cut(s) | 373 |
| Eco88I | CYCGRG | 1 cut(s) | 255 |
| EcoICRI | GAGCTC | 1 cut(s) | 373 |
| EcoO109I | RGGNCCY | 1 cut(s) | 153 |
| EcoT38I | GRGCYC | 1 cut(s) | 375 |
| FaeI | CATG | 3 cut(s) | 73, 296, 304 |
| FaiI | YATR | 6 cut(s) | 71, 111, 113, 164, 294, 302 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 265, 297 |
| FaqI | GGGAC | 1 cut(s) | 139 |
| FatI | CATG | 3 cut(s) | 69, 292, 300 |
| Fnu4HI | GCNGC | 2 cut(s) | 51, 418 |
| FokI | GGATG | 2 cut(s) | 44, 299 |
| FriOI | GRGCYC | 1 cut(s) | 375 |
| Fsp4HI | GCNGC | 2 cut(s) | 51, 418 |
| GluI | GCNGC | 2 cut(s) | 51, 418 |
| GsaI | CCCAGC | 1 cut(s) | 19 |
| HapII | CCGG | 1 cut(s) | 54 |
| Hin1II | CATG | 3 cut(s) | 73, 296, 304 |
| HinfI | GANTC | 1 cut(s) | 94 |
| HpaII | CCGG | 1 cut(s) | 54 |
| Hpy166II | GTNNAC | 3 cut(s) | 93, 244, 279 |
| Hpy188I | TCNGA | 3 cut(s) | 177, 286, 328 |
| Hpy188III | TCNNGA | 5 cut(s) | 220, 241, 255, 257, 412 |
| Hpy8I | GTNNAC | 3 cut(s) | 93, 244, 279 |
| HpyCH4III | ACNGT | 1 cut(s) | 347 |
| HpyCH4IV | ACGT | 1 cut(s) | 225 |
| HpyCH4V | TGCA | 1 cut(s) | 304 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 79, 384 |
| HpyF3I | CTNAG | 1 cut(s) | 374 |
| HpySE526I | ACGT | 1 cut(s) | 225 |
| Hsp92II | CATG | 3 cut(s) | 73, 296, 304 |
| Kzo9I | GATC | 4 cut(s) | 106, 180, 210, 308 |
| LmnI | GCTCC | 2 cut(s) | 84, 414 |
| LpnPI | CCDG | 9 cut(s) | 29, 67, 73, 155, 203, 297, 384, 397, 397 |
| Lsp1109I | GCAGC | 1 cut(s) | 62 |
| LweI | GCATC | 1 cut(s) | 277 |
| MaeII | ACGT | 1 cut(s) | 225 |
| MaeIII | GTNAC | 1 cut(s) | 341 |
| MalI | GATC | 4 cut(s) | 108, 182, 212, 310 |
| MboI | GATC | 4 cut(s) | 106, 180, 210, 308 |
| MboII | GAAGA | 1 cut(s) | 280 |
| MflI | RGATCY | 1 cut(s) | 180 |
| MhlI | GDGCHC | 2 cut(s) | 300, 375 |
| MlyI | GAGTC | 1 cut(s) | 88 |
| MnlI | CCTC | 6 cut(s) | 22, 29, 131, 171, 326, 382 |
| MslI | CAYNNNNRTG | 1 cut(s) | 348 |
| MspA1I | CMGCKG | 1 cut(s) | 420 |
| MspI | CCGG | 1 cut(s) | 54 |
| MspR9I | CCNGG | 1 cut(s) | 55 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 79, 384 |
| NciI | CCSGG | 1 cut(s) | 55 |
| NdeII | GATC | 4 cut(s) | 106, 180, 210, 308 |
| NlaIII | CATG | 3 cut(s) | 73, 296, 304 |
| NlaIV | GGNNCC | 3 cut(s) | 6, 155, 416 |
| NmuCI | GTSAC | 1 cut(s) | 341 |
| NspI | RCATGY | 1 cut(s) | 73 |
| OliI | CACNNNNGTG | 1 cut(s) | 348 |
| PaeR7I | CTCGAG | 1 cut(s) | 255 |
| PaqCI | CACCTGC | 1 cut(s) | 78 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 210 |
| PkrI | GCNGC | 2 cut(s) | 52, 419 |
| PleI | GAGTC | 1 cut(s) | 88 |
| PpsI | GAGTC | 1 cut(s) | 88 |
| PpuMI | RGGWCCY | 1 cut(s) | 153 |
| Psp124BI | GAGCTC | 1 cut(s) | 375 |
| Psp5II | RGGWCCY | 1 cut(s) | 153 |
| PspFI | CCCAGC | 1 cut(s) | 15 |
| PspN4I | GGNNCC | 3 cut(s) | 6, 155, 416 |
| PspPI | GGNCC | 2 cut(s) | 153, 276 |
| PspPPI | RGGWCCY | 1 cut(s) | 153 |
| PsuI | RGATCY | 1 cut(s) | 180 |
| RsaI | GTAC | 1 cut(s) | 203 |
| RsaNI | GTAC | 1 cut(s) | 202 |
| RseI | CAYNNNNRTG | 1 cut(s) | 348 |
| SacI | GAGCTC | 1 cut(s) | 375 |
| SatI | GCNGC | 2 cut(s) | 51, 418 |
| Sau3AI | GATC | 4 cut(s) | 106, 180, 210, 308 |
| Sau96I | GGNCC | 2 cut(s) | 153, 276 |
| SchI | GAGTC | 1 cut(s) | 88 |
| ScrFI | CCNGG | 1 cut(s) | 55 |
| SduI | GDGCHC | 2 cut(s) | 300, 375 |
| SfaNI | GCATC | 1 cut(s) | 277 |
| SfcI | CTRYAG | 2 cut(s) | 102, 162 |
| Sfr274I | CTCGAG | 1 cut(s) | 255 |
| SinI | GGWCC | 2 cut(s) | 153, 276 |
| SlaI | CTCGAG | 1 cut(s) | 255 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 348 |
| SmlI | CTYRAG | 2 cut(s) | 255, 368 |
| SmoI | CTYRAG | 2 cut(s) | 255, 368 |
| SsiI | CCGC | 3 cut(s) | 82, 339, 418 |
| SstI | GAGCTC | 1 cut(s) | 375 |
| StyD4I | CCNGG | 1 cut(s) | 53 |
| TaaI | ACNGT | 1 cut(s) | 347 |
| TaiI | ACGT | 1 cut(s) | 228 |
| TaqI | TCGA | 2 cut(s) | 213, 256 |
| TauI | GCSGC | 1 cut(s) | 420 |
| TseFI | GTSAC | 1 cut(s) | 341 |
| TseI | GCWGC | 1 cut(s) | 50 |
| Tsp45I | GTSAC | 1 cut(s) | 341 |
| VpaK11BI | GGWCC | 2 cut(s) | 153, 276 |
| XceI | RCATGY | 1 cut(s) | 73 |
| XhoI | CTCGAG | 1 cut(s) | 255 |