ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 29 - 148 | 1.9e-16 | Reverse transcriptase-like |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 325 |
| AciI | CCGC | 1 cut(s) | 221 |
| AclWI | GGATC | 1 cut(s) | 83 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 68 |
| AgsI | TTSAA | 4 cut(s) | 44, 239, 388, 480 |
| AjnI | CCWGG | 1 cut(s) | 117 |
| AluBI | AGCT | 2 cut(s) | 245, 422 |
| AluI | AGCT | 2 cut(s) | 245, 422 |
| Alw26I | GTCTC | 1 cut(s) | 138 |
| AlwI | GGATC | 1 cut(s) | 83 |
| AoxI | GGCC | 1 cut(s) | 27 |
| ApaI | GGGCCC | 1 cut(s) | 31 |
| ApeKI | GCWGC | 2 cut(s) | 206, 422 |
| AspLEI | GCGC | 1 cut(s) | 8 |
| AspS9I | GGNCC | 3 cut(s) | 27, 28, 514 |
| AvaII | GGWCC | 1 cut(s) | 514 |
| BaeGI | GKGCMC | 1 cut(s) | 31 |
| BanI | GGYRCC | 1 cut(s) | 325 |
| BanII | GRGCYC | 1 cut(s) | 31 |
| BbsI | GAAGAC | 1 cut(s) | 518 |
| BbvI | GCAGC | 2 cut(s) | 218, 409 |
| BccI | CCATC | 2 cut(s) | 86, 452 |
| BciT130I | CCWGG | 1 cut(s) | 119 |
| BcoDI | GTCTC | 1 cut(s) | 138 |
| BfaI | CTAG | 3 cut(s) | 195, 242, 393 |
| BfoI | RGCGCY | 1 cut(s) | 9 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 334 |
| BisI | GCNGC | 2 cut(s) | 207, 423 |
| BlsI | GCNGC | 2 cut(s) | 208, 424 |
| Bme1390I | CCNGG | 1 cut(s) | 119 |
| Bme18I | GGWCC | 1 cut(s) | 514 |
| BmgT120I | GGNCC | 3 cut(s) | 27, 28, 514 |
| BmiI | GGNNCC | 4 cut(s) | 29, 30, 327, 515 |
| BmrFI | CCNGG | 1 cut(s) | 119 |
| BmsI | GCATC | 2 cut(s) | 373, 418 |
| BpiI | GAAGAC | 1 cut(s) | 518 |
| BsaJI | CCNNGG | 1 cut(s) | 329 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 325, 355 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 68 |
| BseBI | CCWGG | 1 cut(s) | 119 |
| BseDI | CCNNGG | 1 cut(s) | 329 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 68 |
| BseSI | GKGCMC | 1 cut(s) | 31 |
| BseXI | GCAGC | 2 cut(s) | 218, 409 |
| BsgI | GTGCAG | 1 cut(s) | 365 |
| BshFI | GGCC | 1 cut(s) | 29 |
| BshNI | GGYRCC | 1 cut(s) | 325 |
| BslFI | GGGAC | 1 cut(s) | 527 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 68 |
| BsmAI | GTCTC | 1 cut(s) | 138 |
| BsmFI | GGGAC | 1 cut(s) | 527 |
| BsnI | GGCC | 1 cut(s) | 29 |
| Bsp120I | GGGCCC | 1 cut(s) | 27 |
| Bsp1286I | GDGCHC | 1 cut(s) | 31 |
| Bsp143I | GATC | 1 cut(s) | 75 |
| BspACI | CCGC | 1 cut(s) | 221 |
| BspANI | GGCC | 1 cut(s) | 29 |
| BspLI | GGNNCC | 4 cut(s) | 29, 30, 327, 515 |
| BspPI | GGATC | 1 cut(s) | 83 |
| BspT107I | GGYRCC | 1 cut(s) | 325 |
| BssECI | CCNNGG | 1 cut(s) | 329 |
| BssMI | GATC | 1 cut(s) | 75 |
| BssT1I | CCWWGG | 1 cut(s) | 329 |
| Bst2UI | CCWGG | 1 cut(s) | 119 |
| Bst6I | CTCTTC | 1 cut(s) | 181 |
| BstC8I | GCNNGC | 2 cut(s) | 124, 362 |
| BstH2I | RGCGCY | 1 cut(s) | 9 |
| BstHHI | GCGC | 1 cut(s) | 8 |
| BstKTI | GATC | 1 cut(s) | 78 |
| BstMAI | GTCTC | 1 cut(s) | 138 |
| BstMBI | GATC | 1 cut(s) | 75 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 12, 334, 343, 428 |
| BstNI | CCWGG | 1 cut(s) | 119 |
| BstSCI | CCNGG | 1 cut(s) | 117 |
| BstSLI | GKGCMC | 1 cut(s) | 31 |
| BstV1I | GCAGC | 2 cut(s) | 218, 409 |
| BstV2I | GAAGAC | 1 cut(s) | 518 |
| BsuRI | GGCC | 1 cut(s) | 29 |
| BtsI | GCAGTG | 1 cut(s) | 353 |
| BtsIMutI | CAGTG | 1 cut(s) | 353 |
| Cac8I | GCNNGC | 2 cut(s) | 124, 362 |
| CfoI | GCGC | 1 cut(s) | 8 |
| Cfr13I | GGNCC | 3 cut(s) | 27, 28, 514 |
| CviAII | CATG | 2 cut(s) | 99, 217 |
| CviJI | RGCY | 9 cut(s) | 29, 122, 156, 233, 245, 337, 396, 422, 462 |
| CviKI_1 | RGCY | 9 cut(s) | 29, 122, 156, 233, 245, 337, 396, 422, 462 |
| DpnI | GATC | 1 cut(s) | 77 |
| DpnII | GATC | 1 cut(s) | 75 |
| Eam1104I | CTCTTC | 1 cut(s) | 181 |
| EarI | CTCTTC | 1 cut(s) | 181 |
| Eco130I | CCWWGG | 1 cut(s) | 329 |
| Eco24I | GRGCYC | 1 cut(s) | 31 |
| Eco32I | GATATC | 1 cut(s) | 190 |
| Eco47I | GGWCC | 1 cut(s) | 514 |
| EcoO109I | RGGNCCY | 1 cut(s) | 28 |
| EcoRII | CCWGG | 1 cut(s) | 117 |
| EcoRV | GATATC | 1 cut(s) | 190 |
| EcoT14I | CCWWGG | 1 cut(s) | 329 |
| EcoT22I | ATGCAT | 1 cut(s) | 384 |
| EcoT38I | GRGCYC | 1 cut(s) | 31 |
| ErhI | CCWWGG | 1 cut(s) | 329 |
| FaeI | CATG | 2 cut(s) | 102, 220 |
| FaqI | GGGAC | 1 cut(s) | 527 |
| FatI | CATG | 2 cut(s) | 98, 216 |
| Fnu4HI | GCNGC | 2 cut(s) | 207, 423 |
| FriOI | GRGCYC | 1 cut(s) | 31 |
| Fsp4HI | GCNGC | 2 cut(s) | 207, 423 |
| FspBI | CTAG | 3 cut(s) | 195, 242, 393 |
| GlaI | GCGC | 1 cut(s) | 7 |
| GluI | GCNGC | 2 cut(s) | 207, 423 |
| HaeII | RGCGCY | 1 cut(s) | 9 |
| HaeIII | GGCC | 1 cut(s) | 29 |
| HhaI | GCGC | 1 cut(s) | 8 |
| Hin1II | CATG | 2 cut(s) | 102, 220 |
| Hin6I | GCGC | 1 cut(s) | 6 |
| HinP1I | GCGC | 1 cut(s) | 6 |
| HinfI | GANTC | 4 cut(s) | 110, 284, 476, 499 |
| Hpy166II | GTNNAC | 1 cut(s) | 49 |
| Hpy188I | TCNGA | 1 cut(s) | 457 |
| Hpy188III | TCNNGA | 3 cut(s) | 185, 407, 485 |
| Hpy8I | GTNNAC | 1 cut(s) | 49 |
| Hpy99I | CGWCG | 1 cut(s) | 27 |
| HpyAV | CCTTC | 1 cut(s) | 404 |
| HpyCH4V | TGCA | 5 cut(s) | 15, 98, 346, 364, 382 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 12, 334, 343, 428 |
| Hsp92II | CATG | 2 cut(s) | 102, 220 |
| HspAI | GCGC | 1 cut(s) | 6 |
| Kzo9I | GATC | 1 cut(s) | 75 |
| LmnI | GCTCC | 1 cut(s) | 351 |
| LpnPI | CCDG | 4 cut(s) | 104, 131, 308, 498 |
| Lsp1109I | GCAGC | 2 cut(s) | 218, 409 |
| LweI | GCATC | 2 cut(s) | 373, 418 |
| MaeI | CTAG | 3 cut(s) | 195, 242, 393 |
| MalI | GATC | 1 cut(s) | 77 |
| MboI | GATC | 1 cut(s) | 75 |
| MboII | GAAGA | 3 cut(s) | 168, 279, 518 |
| MfeI | CAATTG | 1 cut(s) | 355 |
| MhlI | GDGCHC | 1 cut(s) | 31 |
| MluCI | AATT | 4 cut(s) | 36, 104, 355, 532 |
| MlyI | GAGTC | 2 cut(s) | 104, 508 |
| MmeI | TCCRAC | 2 cut(s) | 53, 138 |
| MnlI | CCTC | 6 cut(s) | 30, 42, 205, 271, 327, 327 |
| Mph1103I | ATGCAT | 1 cut(s) | 384 |
| MseI | TTAA | 4 cut(s) | 56, 84, 228, 547 |
| MspR9I | CCNGG | 1 cut(s) | 119 |
| MunI | CAATTG | 1 cut(s) | 355 |
| MvaI | CCWGG | 1 cut(s) | 119 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 12, 334, 343, 428 |
| NdeII | GATC | 1 cut(s) | 75 |
| NlaIII | CATG | 2 cut(s) | 102, 220 |
| NlaIV | GGNNCC | 4 cut(s) | 29, 30, 327, 515 |
| NsiI | ATGCAT | 1 cut(s) | 384 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 31 |
| PfeI | GAWTC | 2 cut(s) | 284, 476 |
| PkrI | GCNGC | 2 cut(s) | 208, 424 |
| PleI | GAGTC | 2 cut(s) | 104, 507 |
| PpsI | GAGTC | 2 cut(s) | 104, 507 |
| Psp6I | CCWGG | 1 cut(s) | 117 |
| PspGI | CCWGG | 1 cut(s) | 117 |
| PspN4I | GGNNCC | 4 cut(s) | 29, 30, 327, 515 |
| PspOMI | GGGCCC | 1 cut(s) | 27 |
| PspPI | GGNCC | 3 cut(s) | 27, 28, 514 |
| SaqAI | TTAA | 4 cut(s) | 56, 84, 228, 547 |
| SatI | GCNGC | 2 cut(s) | 207, 423 |
| Sau3AI | GATC | 1 cut(s) | 75 |
| Sau96I | GGNCC | 3 cut(s) | 27, 28, 514 |
| SchI | GAGTC | 2 cut(s) | 104, 508 |
| ScrFI | CCNGG | 1 cut(s) | 119 |
| SduI | GDGCHC | 1 cut(s) | 31 |
| SetI | ASST | 7 cut(s) | 22, 169, 216, 247, 282, 424, 526 |
| SfaNI | GCATC | 2 cut(s) | 373, 418 |
| SinI | GGWCC | 1 cut(s) | 514 |
| Sse9I | AATT | 4 cut(s) | 36, 104, 355, 532 |
| SsiI | CCGC | 1 cut(s) | 221 |
| SspMI | CTAG | 3 cut(s) | 195, 242, 393 |
| StyD4I | CCNGG | 1 cut(s) | 117 |
| StyI | CCWWGG | 1 cut(s) | 329 |
| TaqI | TCGA | 1 cut(s) | 34 |
| TasI | AATT | 4 cut(s) | 36, 104, 355, 532 |
| TfiI | GAWTC | 2 cut(s) | 284, 476 |
| Tru1I | TTAA | 4 cut(s) | 56, 84, 228, 547 |
| Tru9I | TTAA | 4 cut(s) | 56, 84, 228, 547 |
| TscAI | CASTG | 1 cut(s) | 353 |
| TseI | GCWGC | 2 cut(s) | 206, 422 |
| TspDTI | ATGAA | 1 cut(s) | 441 |
| TspGWI | ACGGA | 1 cut(s) | 299 |
| TspRI | CASTG | 1 cut(s) | 353 |
| VpaK11BI | GGWCC | 1 cut(s) | 514 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 125 |
| XspI | CTAG | 3 cut(s) | 195, 242, 393 |
| Zsp2I | ATGCAT | 1 cut(s) | 384 |