ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| LigB | PF02900 | 6 - 132 | 3.6e-17 | Catalytic LigB subunit of aromatic ring-opening dioxygenase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 358 |
| AccB1I | GGYRCC | 1 cut(s) | 358 |
| AccII | CGCG | 1 cut(s) | 336 |
| AccIII | TCCGGA | 1 cut(s) | 379 |
| AciI | CCGC | 3 cut(s) | 69, 539, 605 |
| AclWI | GGATC | 3 cut(s) | 30, 294, 695 |
| AcsI | RAATTY | 2 cut(s) | 613, 732 |
| AfaI | GTAC | 5 cut(s) | 233, 245, 360, 610, 655 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 283, 400, 710 |
| AflII | CTTAAG | 1 cut(s) | 476 |
| AgsI | TTSAA | 1 cut(s) | 445 |
| AjiI | CACGTC | 1 cut(s) | 322 |
| AjnI | CCWGG | 3 cut(s) | 89, 353, 393 |
| AluBI | AGCT | 6 cut(s) | 238, 451, 628, 642, 688, 744 |
| AluI | AGCT | 6 cut(s) | 238, 451, 628, 642, 688, 744 |
| Alw26I | GTCTC | 1 cut(s) | 53 |
| AlwI | GGATC | 3 cut(s) | 30, 294, 695 |
| Ama87I | CYCGRG | 1 cut(s) | 276 |
| Aor13HI | TCCGGA | 1 cut(s) | 379 |
| AoxI | GGCC | 1 cut(s) | 184 |
| ApeKI | GCWGC | 2 cut(s) | 299, 602 |
| ApoI | RAATTY | 2 cut(s) | 613, 732 |
| Asp718I | GGTACC | 1 cut(s) | 358 |
| AspLEI | GCGC | 1 cut(s) | 336 |
| AsuHPI | GGTGA | 3 cut(s) | 124, 252, 555 |
| AsuII | TTCGAA | 1 cut(s) | 617 |
| AvaI | CYCGRG | 1 cut(s) | 276 |
| AxyI | CCTNAGG | 1 cut(s) | 254 |
| BanI | GGYRCC | 1 cut(s) | 358 |
| BauI | CACGAG | 1 cut(s) | 635 |
| BbvCI | CCTCAGC | 1 cut(s) | 452 |
| BbvI | GCAGC | 2 cut(s) | 286, 589 |
| BccI | CCATC | 3 cut(s) | 143, 206, 464 |
| BciT130I | CCWGG | 3 cut(s) | 91, 355, 395 |
| BciVI | GTATCC | 1 cut(s) | 387 |
| BclI | TGATCA | 1 cut(s) | 568 |
| BcoDI | GTCTC | 1 cut(s) | 53 |
| BfaI | CTAG | 2 cut(s) | 269, 312 |
| BfrI | CTTAAG | 1 cut(s) | 476 |
| BfuI | GTATCC | 1 cut(s) | 387 |
| BisI | GCNGC | 2 cut(s) | 300, 603 |
| BlsI | GCNGC | 2 cut(s) | 301, 604 |
| Bme1390I | CCNGG | 3 cut(s) | 91, 355, 395 |
| BmeT110I | CYCGRG | 1 cut(s) | 276 |
| BmgBI | CACGTC | 1 cut(s) | 322 |
| BmiI | GGNNCC | 4 cut(s) | 107, 352, 360, 536 |
| BmrFI | CCNGG | 3 cut(s) | 91, 355, 395 |
| BmrI | ACTGGG | 1 cut(s) | 157 |
| BmsI | GCATC | 2 cut(s) | 60, 655 |
| BmuI | ACTGGG | 1 cut(s) | 157 |
| BpmI | CTGGAG | 1 cut(s) | 416 |
| Bpu10I | CCTNAGC | 1 cut(s) | 452 |
| Bpu14I | TTCGAA | 1 cut(s) | 617 |
| BpuEI | CTTGAG | 2 cut(s) | 224, 477 |
| Bsa29I | ATCGAT | 1 cut(s) | 54 |
| BsaI | GGTCTC | 1 cut(s) | 53 |
| BsaJI | CCNNGG | 2 cut(s) | 346, 354 |
| BsaWI | WCCGGW | 1 cut(s) | 379 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 440, 470 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 283, 400, 710 |
| Bse1I | ACTGG | 1 cut(s) | 152 |
| Bse21I | CCTNAGG | 1 cut(s) | 254 |
| Bse3DI | GCAATG | 1 cut(s) | 600 |
| BseAI | TCCGGA | 1 cut(s) | 379 |
| BseBI | CCWGG | 3 cut(s) | 91, 355, 395 |
| BseCI | ATCGAT | 1 cut(s) | 54 |
| BseDI | CCNNGG | 2 cut(s) | 346, 354 |
| BseGI | GGATG | 4 cut(s) | 390, 475, 556, 630 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 283, 400, 710 |
| BseMI | GCAATG | 1 cut(s) | 600 |
| BseMII | CTCAG | 1 cut(s) | 443 |
| BseNI | ACTGG | 1 cut(s) | 152 |
| BseXI | GCAGC | 2 cut(s) | 286, 589 |
| Bsh1236I | CGCG | 1 cut(s) | 336 |
| BshFI | GGCC | 1 cut(s) | 186 |
| BshNI | GGYRCC | 1 cut(s) | 358 |
| BshVI | ATCGAT | 1 cut(s) | 54 |
| BsiHKCI | CYCGRG | 1 cut(s) | 276 |
| BsiSI | CCGG | 1 cut(s) | 380 |
| BslFI | GGGAC | 1 cut(s) | 146 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 283, 400, 710 |
| BsmAI | GTCTC | 1 cut(s) | 53 |
| BsmFI | GGGAC | 1 cut(s) | 146 |
| BsnI | GGCC | 1 cut(s) | 186 |
| Bso31I | GGTCTC | 1 cut(s) | 53 |
| BsoBI | CYCGRG | 1 cut(s) | 276 |
| Bsp119I | TTCGAA | 1 cut(s) | 617 |
| Bsp13I | TCCGGA | 1 cut(s) | 379 |
| Bsp1407I | TGTACA | 1 cut(s) | 231 |
| Bsp143I | GATC | 4 cut(s) | 35, 286, 568, 700 |
| BspACI | CCGC | 3 cut(s) | 69, 539, 605 |
| BspANI | GGCC | 1 cut(s) | 186 |
| BspCNI | CTCAG | 1 cut(s) | 444 |
| BspDI | ATCGAT | 1 cut(s) | 54 |
| BspEI | TCCGGA | 1 cut(s) | 379 |
| BspFNI | CGCG | 1 cut(s) | 336 |
| BspLI | GGNNCC | 4 cut(s) | 107, 352, 360, 536 |
| BspPI | GGATC | 3 cut(s) | 30, 294, 695 |
| BspT104I | TTCGAA | 1 cut(s) | 617 |
| BspT107I | GGYRCC | 1 cut(s) | 358 |
| BspTI | CTTAAG | 1 cut(s) | 476 |
| BspTNI | GGTCTC | 1 cut(s) | 53 |
| BsrDI | GCAATG | 1 cut(s) | 600 |
| BsrGI | TGTACA | 1 cut(s) | 231 |
| BsrI | ACTGG | 1 cut(s) | 152 |
| BssECI | CCNNGG | 2 cut(s) | 346, 354 |
| BssMI | GATC | 4 cut(s) | 35, 286, 568, 700 |
| BssSI | CACGAG | 1 cut(s) | 635 |
| Bst2BI | CACGAG | 1 cut(s) | 635 |
| Bst2UI | CCWGG | 3 cut(s) | 91, 355, 395 |
| Bst4CI | ACNGT | 2 cut(s) | 350, 466 |
| BstAFI | CTTAAG | 1 cut(s) | 476 |
| BstAUI | TGTACA | 1 cut(s) | 231 |
| BstBI | TTCGAA | 1 cut(s) | 617 |
| BstC8I | GCNNGC | 2 cut(s) | 543, 644 |
| BstDEI | CTNAG | 2 cut(s) | 254, 452 |
| BstDSI | CCRYGG | 1 cut(s) | 346 |
| BstEII | GGTNACC | 1 cut(s) | 258 |
| BstF5I | GGATG | 4 cut(s) | 390, 475, 556, 630 |
| BstFNI | CGCG | 1 cut(s) | 336 |
| BstHHI | GCGC | 1 cut(s) | 336 |
| BstKTI | GATC | 4 cut(s) | 38, 289, 571, 703 |
| BstMAI | GTCTC | 1 cut(s) | 53 |
| BstMBI | GATC | 4 cut(s) | 35, 286, 568, 700 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 551, 599 |
| BstNI | CCWGG | 3 cut(s) | 91, 355, 395 |
| BstNSI | RCATGY | 1 cut(s) | 545 |
| BstPI | GGTNACC | 1 cut(s) | 258 |
| BstSCI | CCNGG | 3 cut(s) | 89, 353, 393 |
| BstUI | CGCG | 1 cut(s) | 336 |
| BstV1I | GCAGC | 2 cut(s) | 286, 589 |
| BstX2I | RGATCY | 2 cut(s) | 35, 286 |
| BstYI | RGATCY | 2 cut(s) | 35, 286 |
| Bsu15I | ATCGAT | 1 cut(s) | 54 |
| Bsu36I | CCTNAGG | 1 cut(s) | 254 |
| BsuI | GTATCC | 1 cut(s) | 387 |
| BsuRI | GGCC | 1 cut(s) | 186 |
| BsuTUI | ATCGAT | 1 cut(s) | 54 |
| BtgI | CCRYGG | 1 cut(s) | 346 |
| BtrI | CACGTC | 1 cut(s) | 322 |
| BtsCI | GGATG | 4 cut(s) | 390, 475, 556, 630 |
| BtsI | GCAGTG | 1 cut(s) | 294 |
| BtsIMutI | CAGTG | 2 cut(s) | 145, 294 |
| Cac8I | GCNNGC | 2 cut(s) | 543, 644 |
| CfoI | GCGC | 1 cut(s) | 336 |
| ClaI | ATCGAT | 1 cut(s) | 54 |
| Csp6I | GTAC | 5 cut(s) | 232, 244, 359, 609, 654 |
| CviAII | CATG | 4 cut(s) | 229, 367, 373, 542 |
| CviQI | GTAC | 5 cut(s) | 232, 244, 359, 609, 654 |
| DdeI | CTNAG | 2 cut(s) | 254, 452 |
| DpnI | GATC | 4 cut(s) | 37, 288, 570, 702 |
| DpnII | GATC | 4 cut(s) | 35, 286, 568, 700 |
| Eco31I | GGTCTC | 1 cut(s) | 53 |
| Eco81I | CCTNAGG | 1 cut(s) | 254 |
| Eco88I | CYCGRG | 1 cut(s) | 276 |
| Eco91I | GGTNACC | 1 cut(s) | 258 |
| EcoO65I | GGTNACC | 1 cut(s) | 258 |
| EcoRI | GAATTC | 2 cut(s) | 613, 732 |
| EcoRII | CCWGG | 3 cut(s) | 89, 353, 393 |
| FaeI | CATG | 4 cut(s) | 232, 370, 376, 545 |
| FaqI | GGGAC | 1 cut(s) | 146 |
| FatI | CATG | 4 cut(s) | 228, 366, 372, 541 |
| FauI | CCCGC | 3 cut(s) | 76, 546, 598 |
| FauNDI | CATATG | 1 cut(s) | 706 |
| FbaI | TGATCA | 1 cut(s) | 568 |
| Fnu4HI | GCNGC | 2 cut(s) | 300, 603 |
| FokI | GGATG | 4 cut(s) | 377, 482, 543, 617 |
| Fsp4HI | GCNGC | 2 cut(s) | 300, 603 |
| FspBI | CTAG | 2 cut(s) | 269, 312 |
| GlaI | GCGC | 1 cut(s) | 335 |
| GluI | GCNGC | 2 cut(s) | 300, 603 |
| GsuI | CTGGAG | 1 cut(s) | 416 |
| HaeIII | GGCC | 1 cut(s) | 186 |
| HapII | CCGG | 1 cut(s) | 380 |
| HhaI | GCGC | 1 cut(s) | 336 |
| Hin1II | CATG | 4 cut(s) | 232, 370, 376, 545 |
| Hin6I | GCGC | 1 cut(s) | 334 |
| HinP1I | GCGC | 1 cut(s) | 334 |
| HincII | GTYRAC | 1 cut(s) | 319 |
| HindII | GTYRAC | 1 cut(s) | 319 |
| HinfI | GANTC | 5 cut(s) | 279, 306, 419, 490, 718 |
| HpaII | CCGG | 1 cut(s) | 380 |
| HphI | GGTGA | 3 cut(s) | 124, 252, 555 |
| Hpy166II | GTNNAC | 4 cut(s) | 319, 325, 436, 514 |
| Hpy188I | TCNGA | 1 cut(s) | 585 |
| Hpy188III | TCNNGA | 1 cut(s) | 380 |
| Hpy8I | GTNNAC | 4 cut(s) | 319, 325, 436, 514 |
| HpyAV | CCTTC | 4 cut(s) | 439, 525, 570, 613 |
| HpyCH4III | ACNGT | 2 cut(s) | 350, 466 |
| HpyCH4IV | ACGT | 1 cut(s) | 321 |
| HpyCH4V | TGCA | 2 cut(s) | 545, 710 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 551, 599 |
| HpyF3I | CTNAG | 2 cut(s) | 254, 452 |
| HpySE526I | ACGT | 1 cut(s) | 321 |
| Hsp92II | CATG | 4 cut(s) | 232, 370, 376, 545 |
| HspAI | GCGC | 1 cut(s) | 334 |
| Kpn2I | TCCGGA | 1 cut(s) | 379 |
| KpnI | GGTACC | 1 cut(s) | 362 |
| Ksp22I | TGATCA | 1 cut(s) | 568 |
| Kzo9I | GATC | 4 cut(s) | 35, 286, 568, 700 |
| LmnI | GCTCC | 2 cut(s) | 448, 540 |
| Lsp1109I | GCAGC | 2 cut(s) | 286, 589 |
| LweI | GCATC | 2 cut(s) | 60, 655 |
| MaeI | CTAG | 2 cut(s) | 269, 312 |
| MaeII | ACGT | 1 cut(s) | 321 |
| MaeIII | GTNAC | 1 cut(s) | 258 |
| MalI | GATC | 4 cut(s) | 37, 288, 570, 702 |
| MboI | GATC | 4 cut(s) | 35, 286, 568, 700 |
| MboII | GAAGA | 3 cut(s) | 281, 510, 540 |
| MfeI | CAATTG | 1 cut(s) | 696 |
| MflI | RGATCY | 2 cut(s) | 35, 286 |
| MluCI | AATT | 4 cut(s) | 613, 677, 696, 732 |
| MlyI | GAGTC | 3 cut(s) | 288, 428, 484 |
| MnlI | CCTC | 9 cut(s) | 92, 140, 166, 350, 376, 391, 447, 475, 591 |
| MroI | TCCGGA | 1 cut(s) | 379 |
| MseI | TTAA | 2 cut(s) | 171, 477 |
| MslI | CAYNNNNRTG | 1 cut(s) | 371 |
| MspCI | CTTAAG | 1 cut(s) | 476 |
| MspI | CCGG | 1 cut(s) | 380 |
| MspR9I | CCNGG | 3 cut(s) | 91, 355, 395 |
| MunI | CAATTG | 1 cut(s) | 696 |
| MvaI | CCWGG | 3 cut(s) | 91, 355, 395 |
| MvnI | CGCG | 1 cut(s) | 336 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 551, 599 |
| NdeI | CATATG | 1 cut(s) | 706 |
| NdeII | GATC | 4 cut(s) | 35, 286, 568, 700 |
| NlaIII | CATG | 4 cut(s) | 232, 370, 376, 545 |
| NlaIV | GGNNCC | 4 cut(s) | 107, 352, 360, 536 |
| NmuCI | GTSAC | 1 cut(s) | 258 |
| NspI | RCATGY | 1 cut(s) | 545 |
| NspV | TTCGAA | 1 cut(s) | 617 |
| PaeI | GCATGC | 1 cut(s) | 545 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 189 |
| PfeI | GAWTC | 2 cut(s) | 306, 718 |
| PfoI | TCCNGGA | 2 cut(s) | 89, 393 |
| PkrI | GCNGC | 2 cut(s) | 301, 604 |
| PleI | GAGTC | 3 cut(s) | 287, 427, 484 |
| PpsI | GAGTC | 3 cut(s) | 287, 427, 484 |
| Psp6I | CCWGG | 3 cut(s) | 89, 353, 393 |
| PspEI | GGTNACC | 1 cut(s) | 258 |
| PspGI | CCWGG | 3 cut(s) | 89, 353, 393 |
| PspN4I | GGNNCC | 4 cut(s) | 107, 352, 360, 536 |
| PsuI | RGATCY | 2 cut(s) | 35, 286 |
| RsaI | GTAC | 5 cut(s) | 233, 245, 360, 610, 655 |
| RsaNI | GTAC | 5 cut(s) | 232, 244, 359, 609, 654 |
| RseI | CAYNNNNRTG | 1 cut(s) | 371 |
| SaqAI | TTAA | 2 cut(s) | 171, 477 |
| SatI | GCNGC | 2 cut(s) | 300, 603 |
| Sau3AI | GATC | 4 cut(s) | 35, 286, 568, 700 |
| SchI | GAGTC | 3 cut(s) | 288, 428, 484 |
| ScrFI | CCNGG | 3 cut(s) | 91, 355, 395 |
| SfaNI | GCATC | 2 cut(s) | 60, 655 |
| SfuI | TTCGAA | 1 cut(s) | 617 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 371 |
| SmlI | CTYRAG | 3 cut(s) | 239, 476, 492 |
| SmoI | CTYRAG | 3 cut(s) | 239, 476, 492 |
| SphI | GCATGC | 1 cut(s) | 545 |
| Sse9I | AATT | 4 cut(s) | 613, 677, 696, 732 |
| SsiI | CCGC | 3 cut(s) | 69, 539, 605 |
| SspMI | CTAG | 2 cut(s) | 269, 312 |
| StyD4I | CCNGG | 3 cut(s) | 89, 353, 393 |
| TaaI | ACNGT | 2 cut(s) | 350, 466 |
| TaiI | ACGT | 1 cut(s) | 324 |
| TaqI | TCGA | 3 cut(s) | 54, 617, 730 |
| TasI | AATT | 4 cut(s) | 613, 677, 696, 732 |
| TatI | WGTACW | 1 cut(s) | 231 |
| TfiI | GAWTC | 2 cut(s) | 306, 718 |
| Tru1I | TTAA | 2 cut(s) | 171, 477 |
| Tru9I | TTAA | 2 cut(s) | 171, 477 |
| TscAI | CASTG | 2 cut(s) | 152, 301 |
| TseFI | GTSAC | 1 cut(s) | 258 |
| TseI | GCWGC | 2 cut(s) | 299, 602 |
| Tsp45I | GTSAC | 1 cut(s) | 258 |
| TspDTI | ATGAA | 2 cut(s) | 361, 660 |
| TspGWI | ACGGA | 1 cut(s) | 148 |
| TspRI | CASTG | 2 cut(s) | 152, 301 |
| Vha464I | CTTAAG | 1 cut(s) | 476 |
| XapI | RAATTY | 2 cut(s) | 613, 732 |
| XceI | RCATGY | 1 cut(s) | 545 |
| XspI | CTAG | 2 cut(s) | 269, 312 |