Homeobox-leucine zipper protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| WD40_RLD | PF25390 | 18 - 386 | 3.2e-81 | RCC1-like domain |
| RCC1 | PF00415 | 18 - 68 | 6e-11 | Regulator of chromosome condensation (RCC1) repeat |
| RCC1_2 | PF13540 | 57 - 84 | 1.2e-07 | Regulator of chromosome condensation (RCC1) repeat |
| RCC1 | PF00415 | 72 - 119 | 2.5e-13 | Regulator of chromosome condensation (RCC1) repeat |
| RCC1 | PF00415 | 126 - 172 | 2e-12 | Regulator of chromosome condensation (RCC1) repeat |
| RCC1_2 | PF13540 | 159 - 188 | 3e-06 | Regulator of chromosome condensation (RCC1) repeat |
| RCC1 | PF00415 | 177 - 226 | 6.2e-07 | Regulator of chromosome condensation (RCC1) repeat |
| Alsin_RLD | PF25384 | 266 - 384 | 3.7e-08 | Alsin RCC1-like domain |
| RCC1_2 | PF13540 | 320 - 347 | 1.3e-08 | Regulator of chromosome condensation (RCC1) repeat |
| RCC1 | PF00415 | 334 - 387 | 1.3e-11 | Regulator of chromosome condensation (RCC1) repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 2 cut(s) | 136, 534 |
| AciI | CCGC | 4 cut(s) | 150, 180, 183, 1169 |
| AcsI | RAATTY | 1 cut(s) | 612 |
| AfaI | GTAC | 1 cut(s) | 698 |
| AflIII | ACRYGT | 1 cut(s) | 383 |
| AgsI | TTSAA | 3 cut(s) | 626, 729, 941 |
| AjnI | CCWGG | 3 cut(s) | 887, 918, 931 |
| AluBI | AGCT | 9 cut(s) | 88, 115, 253, 292, 409, 779, 914, 1042, 1115 |
| AluI | AGCT | 9 cut(s) | 88, 115, 253, 292, 409, 779, 914, 1042, 1115 |
| Alw21I | GWGCWC | 3 cut(s) | 117, 736, 981 |
| Alw26I | GTCTC | 2 cut(s) | 457, 1094 |
| Ama87I | CYCGRG | 1 cut(s) | 349 |
| ApeKI | GCWGC | 6 cut(s) | 85, 671, 779, 965, 1115, 1118 |
| ApoI | RAATTY | 1 cut(s) | 612 |
| AspLEI | GCGC | 2 cut(s) | 188, 501 |
| AspS9I | GGNCC | 1 cut(s) | 158 |
| AsuC2I | CCSGG | 2 cut(s) | 550, 970 |
| AsuHPI | GGTGA | 3 cut(s) | 431, 839, 1040 |
| AvaI | CYCGRG | 1 cut(s) | 349 |
| AvaII | GGWCC | 1 cut(s) | 158 |
| BaeGI | GKGCMC | 1 cut(s) | 95 |
| BanII | GRGCYC | 1 cut(s) | 117 |
| BbsI | GAAGAC | 1 cut(s) | 593 |
| Bbv12I | GWGCWC | 3 cut(s) | 117, 736, 981 |
| BbvI | GCAGC | 6 cut(s) | 97, 683, 766, 977, 1102, 1105 |
| BccI | CCATC | 5 cut(s) | 170, 386, 680, 783, 995 |
| BceAI | ACGGC | 1 cut(s) | 137 |
| BciT130I | CCWGG | 3 cut(s) | 889, 920, 933 |
| BcnI | CCSGG | 2 cut(s) | 550, 970 |
| BcoDI | GTCTC | 2 cut(s) | 457, 1094 |
| BfaI | CTAG | 1 cut(s) | 642 |
| BfmI | CTRYAG | 1 cut(s) | 104 |
| BfoI | RGCGCY | 1 cut(s) | 189 |
| BisI | GCNGC | 8 cut(s) | 86, 181, 184, 672, 780, 966, 1116, 1119 |
| BlpI | GCTNAGC | 1 cut(s) | 975 |
| BlsI | GCNGC | 8 cut(s) | 87, 182, 185, 673, 781, 967, 1117, 1120 |
| Bme1390I | CCNGG | 5 cut(s) | 550, 889, 920, 933, 970 |
| Bme18I | GGWCC | 1 cut(s) | 158 |
| BmeT110I | CYCGRG | 1 cut(s) | 349 |
| BmgT120I | GGNCC | 1 cut(s) | 158 |
| BmiI | GGNNCC | 4 cut(s) | 159, 160, 344, 547 |
| BmrFI | CCNGG | 5 cut(s) | 550, 889, 920, 933, 970 |
| BmsI | GCATC | 3 cut(s) | 355, 654, 1180 |
| BpiI | GAAGAC | 1 cut(s) | 593 |
| BpmI | CTGGAG | 1 cut(s) | 867 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 975 |
| BpuEI | CTTGAG | 1 cut(s) | 1062 |
| BpuMI | CCSGG | 2 cut(s) | 550, 970 |
| BsaJI | CCNNGG | 6 cut(s) | 153, 576, 850, 859, 931, 969 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 516, 546 |
| Bse3DI | GCAATG | 3 cut(s) | 433, 648, 960 |
| BseBI | CCWGG | 3 cut(s) | 889, 920, 933 |
| BseDI | CCNNGG | 6 cut(s) | 153, 576, 850, 859, 931, 969 |
| BseGI | GGATG | 4 cut(s) | 115, 283, 379, 794 |
| BseMI | GCAATG | 3 cut(s) | 433, 648, 960 |
| BseMII | CTCAG | 2 cut(s) | 137, 966 |
| BseRI | GAGGAG | 3 cut(s) | 107, 161, 1065 |
| BseSI | GKGCMC | 1 cut(s) | 95 |
| BseXI | GCAGC | 6 cut(s) | 97, 683, 766, 977, 1102, 1105 |
| BseYI | CCCAGC | 2 cut(s) | 88, 1023 |
| BsgI | GTGCAG | 1 cut(s) | 690 |
| BsiHKAI | GWGCWC | 3 cut(s) | 117, 736, 981 |
| BsiHKCI | CYCGRG | 1 cut(s) | 349 |
| BsiSI | CCGG | 2 cut(s) | 549, 969 |
| BslFI | GGGAC | 2 cut(s) | 171, 914 |
| BsmAI | GTCTC | 2 cut(s) | 457, 1094 |
| BsmFI | GGGAC | 2 cut(s) | 171, 914 |
| BsoBI | CYCGRG | 1 cut(s) | 349 |
| Bsp1286I | GDGCHC | 4 cut(s) | 95, 117, 736, 981 |
| Bsp1407I | TGTACA | 1 cut(s) | 696 |
| Bsp143I | GATC | 4 cut(s) | 585, 661, 951, 1063 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 975 |
| Bsp19I | CCATGG | 1 cut(s) | 850 |
| BspACI | CCGC | 4 cut(s) | 150, 180, 183, 1169 |
| BspCNI | CTCAG | 2 cut(s) | 136, 967 |
| BspLI | GGNNCC | 4 cut(s) | 159, 160, 344, 547 |
| BspQI | GCTCTTC | 1 cut(s) | 39 |
| BsrDI | GCAATG | 3 cut(s) | 433, 648, 960 |
| BsrGI | TGTACA | 1 cut(s) | 696 |
| BssECI | CCNNGG | 6 cut(s) | 153, 576, 850, 859, 931, 969 |
| BssMI | GATC | 4 cut(s) | 585, 661, 951, 1063 |
| BssNAI | GTATAC | 1 cut(s) | 535 |
| BssT1I | CCWWGG | 3 cut(s) | 576, 850, 859 |
| Bst1107I | GTATAC | 1 cut(s) | 535 |
| Bst2UI | CCWGG | 3 cut(s) | 889, 920, 933 |
| Bst4CI | ACNGT | 2 cut(s) | 747, 1136 |
| Bst6I | CTCTTC | 3 cut(s) | 39, 229, 936 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 680 |
| BstAUI | TGTACA | 1 cut(s) | 696 |
| BstC8I | GCNNGC | 4 cut(s) | 101, 178, 327, 337 |
| BstDEI | CTNAG | 4 cut(s) | 123, 895, 975, 1182 |
| BstDSI | CCRYGG | 2 cut(s) | 153, 850 |
| BstF5I | GGATG | 4 cut(s) | 115, 283, 379, 794 |
| BstH2I | RGCGCY | 1 cut(s) | 189 |
| BstHHI | GCGC | 2 cut(s) | 188, 501 |
| BstKTI | GATC | 4 cut(s) | 588, 664, 954, 1066 |
| BstMAI | GTCTC | 2 cut(s) | 457, 1094 |
| BstMBI | GATC | 4 cut(s) | 585, 661, 951, 1063 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 680, 971 |
| BstNI | CCWGG | 3 cut(s) | 889, 920, 933 |
| BstNSI | RCATGY | 4 cut(s) | 329, 387, 492, 1062 |
| BstSCI | CCNGG | 5 cut(s) | 548, 887, 918, 931, 968 |
| BstSFI | CTRYAG | 1 cut(s) | 104 |
| BstSLI | GKGCMC | 1 cut(s) | 95 |
| BstV1I | GCAGC | 6 cut(s) | 97, 683, 766, 977, 1102, 1105 |
| BstV2I | GAAGAC | 1 cut(s) | 593 |
| BstZ17I | GTATAC | 1 cut(s) | 535 |
| BtgI | CCRYGG | 2 cut(s) | 153, 850 |
| BtsCI | GGATG | 4 cut(s) | 115, 283, 379, 794 |
| Cac8I | GCNNGC | 4 cut(s) | 101, 178, 327, 337 |
| CfoI | GCGC | 2 cut(s) | 188, 501 |
| Cfr13I | GGNCC | 1 cut(s) | 158 |
| Csp6I | GTAC | 1 cut(s) | 697 |
| CviQI | GTAC | 1 cut(s) | 697 |
| DdeI | CTNAG | 4 cut(s) | 123, 895, 975, 1182 |
| DpnI | GATC | 4 cut(s) | 587, 663, 953, 1065 |
| DpnII | GATC | 4 cut(s) | 585, 661, 951, 1063 |
| Eam1104I | CTCTTC | 3 cut(s) | 39, 229, 936 |
| EarI | CTCTTC | 3 cut(s) | 39, 229, 936 |
| EciI | GGCGGA | 1 cut(s) | 139 |
| Ecl136II | GAGCTC | 1 cut(s) | 115 |
| Eco130I | CCWWGG | 3 cut(s) | 576, 850, 859 |
| Eco24I | GRGCYC | 1 cut(s) | 117 |
| Eco47I | GGWCC | 1 cut(s) | 158 |
| Eco53kI | GAGCTC | 1 cut(s) | 115 |
| Eco88I | CYCGRG | 1 cut(s) | 349 |
| EcoICRI | GAGCTC | 1 cut(s) | 115 |
| EcoO109I | RGGNCCY | 1 cut(s) | 158 |
| EcoRII | CCWGG | 3 cut(s) | 887, 918, 931 |
| EcoT14I | CCWWGG | 3 cut(s) | 576, 850, 859 |
| EcoT38I | GRGCYC | 1 cut(s) | 117 |
| ErhI | CCWWGG | 3 cut(s) | 576, 850, 859 |
| FaqI | GGGAC | 2 cut(s) | 171, 914 |
| FauNDI | CATATG | 1 cut(s) | 693 |
| FblI | GTMKAC | 2 cut(s) | 136, 534 |
| Fnu4HI | GCNGC | 8 cut(s) | 86, 181, 184, 672, 780, 966, 1116, 1119 |
| FokI | GGATG | 4 cut(s) | 122, 270, 386, 801 |
| FriOI | GRGCYC | 1 cut(s) | 117 |
| Fsp4HI | GCNGC | 8 cut(s) | 86, 181, 184, 672, 780, 966, 1116, 1119 |
| FspBI | CTAG | 1 cut(s) | 642 |
| GlaI | GCGC | 2 cut(s) | 187, 500 |
| GluI | GCNGC | 8 cut(s) | 86, 181, 184, 672, 780, 966, 1116, 1119 |
| GsaI | CCCAGC | 2 cut(s) | 92, 1027 |
| GsuI | CTGGAG | 1 cut(s) | 867 |
| HaeII | RGCGCY | 1 cut(s) | 189 |
| HapII | CCGG | 2 cut(s) | 549, 969 |
| HhaI | GCGC | 2 cut(s) | 188, 501 |
| Hin6I | GCGC | 2 cut(s) | 186, 499 |
| HinP1I | GCGC | 2 cut(s) | 186, 499 |
| HincII | GTYRAC | 1 cut(s) | 563 |
| HindII | GTYRAC | 1 cut(s) | 563 |
| HindIII | AAGCTT | 1 cut(s) | 290 |
| HinfI | GANTC | 5 cut(s) | 793, 855, 880, 902, 1087 |
| HpaII | CCGG | 2 cut(s) | 549, 969 |
| HphI | GGTGA | 3 cut(s) | 431, 839, 1040 |
| Hpy166II | GTNNAC | 8 cut(s) | 137, 431, 535, 563, 699, 771, 1031, 1149 |
| Hpy188I | TCNGA | 5 cut(s) | 265, 364, 1094, 1107, 1185 |
| Hpy188III | TCNNGA | 6 cut(s) | 605, 869, 906, 938, 1079, 1126 |
| Hpy8I | GTNNAC | 8 cut(s) | 137, 431, 535, 563, 699, 771, 1031, 1149 |
| HpyAV | CCTTC | 5 cut(s) | 11, 150, 211, 620, 1188 |
| HpyCH4III | ACNGT | 2 cut(s) | 747, 1136 |
| HpyCH4IV | ACGT | 1 cut(s) | 192 |
| HpyCH4V | TGCA | 5 cut(s) | 438, 653, 671, 965, 1121 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 680, 971 |
| HpyF3I | CTNAG | 4 cut(s) | 123, 895, 975, 1182 |
| HpySE526I | ACGT | 1 cut(s) | 192 |
| HspAI | GCGC | 2 cut(s) | 186, 499 |
| KflI | GGGWCCC | 1 cut(s) | 158 |
| Kzo9I | GATC | 4 cut(s) | 585, 661, 951, 1063 |
| LguI | GCTCTTC | 1 cut(s) | 39 |
| LmnI | GCTCC | 2 cut(s) | 120, 551 |
| Lsp1109I | GCAGC | 6 cut(s) | 97, 683, 766, 977, 1102, 1105 |
| LweI | GCATC | 3 cut(s) | 355, 654, 1180 |
| MaeI | CTAG | 1 cut(s) | 642 |
| MaeII | ACGT | 1 cut(s) | 192 |
| MaeIII | GTNAC | 2 cut(s) | 637, 991 |
| MalI | GATC | 4 cut(s) | 587, 663, 953, 1065 |
| MboI | GATC | 4 cut(s) | 585, 661, 951, 1063 |
| MhlI | GDGCHC | 4 cut(s) | 95, 117, 736, 981 |
| MluCI | AATT | 3 cut(s) | 594, 612, 1008 |
| MlyI | GAGTC | 3 cut(s) | 864, 874, 1096 |
| MmeI | TCCRAC | 1 cut(s) | 766 |
| MnlI | CCTC | 6 cut(s) | 128, 132, 182, 230, 363, 1086 |
| MseI | TTAA | 4 cut(s) | 203, 273, 809, 1011 |
| MslI | CAYNNNNRTG | 1 cut(s) | 763 |
| MspA1I | CMGCKG | 1 cut(s) | 88 |
| MspI | CCGG | 2 cut(s) | 549, 969 |
| MspR9I | CCNGG | 5 cut(s) | 550, 889, 920, 933, 970 |
| MvaI | CCWGG | 3 cut(s) | 889, 920, 933 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 680, 971 |
| NciI | CCSGG | 2 cut(s) | 550, 970 |
| NcoI | CCATGG | 1 cut(s) | 850 |
| NdeI | CATATG | 1 cut(s) | 693 |
| NdeII | GATC | 4 cut(s) | 585, 661, 951, 1063 |
| NlaIV | GGNNCC | 4 cut(s) | 159, 160, 344, 547 |
| NmuCI | GTSAC | 1 cut(s) | 991 |
| NspI | RCATGY | 4 cut(s) | 329, 387, 492, 1062 |
| PaeI | GCATGC | 1 cut(s) | 329 |
| PciI | ACATGT | 1 cut(s) | 383 |
| PciSI | GCTCTTC | 1 cut(s) | 39 |
| PfeI | GAWTC | 2 cut(s) | 793, 902 |
| PfoI | TCCNGGA | 2 cut(s) | 548, 918 |
| PkrI | GCNGC | 8 cut(s) | 87, 182, 185, 673, 781, 967, 1117, 1120 |
| PleI | GAGTC | 3 cut(s) | 863, 874, 1095 |
| PpsI | GAGTC | 3 cut(s) | 863, 874, 1095 |
| PpuMI | RGGWCCY | 1 cut(s) | 158 |
| PscI | ACATGT | 1 cut(s) | 383 |
| Psp124BI | GAGCTC | 1 cut(s) | 117 |
| Psp5II | RGGWCCY | 1 cut(s) | 158 |
| Psp6I | CCWGG | 3 cut(s) | 887, 918, 931 |
| PspFI | CCCAGC | 2 cut(s) | 88, 1023 |
| PspGI | CCWGG | 3 cut(s) | 887, 918, 931 |
| PspN4I | GGNNCC | 4 cut(s) | 159, 160, 344, 547 |
| PspPI | GGNCC | 1 cut(s) | 158 |
| PspPPI | RGGWCCY | 1 cut(s) | 158 |
| PvuII | CAGCTG | 1 cut(s) | 88 |
| RsaI | GTAC | 1 cut(s) | 698 |
| RsaNI | GTAC | 1 cut(s) | 697 |
| RseI | CAYNNNNRTG | 1 cut(s) | 763 |
| SacI | GAGCTC | 1 cut(s) | 117 |
| SapI | GCTCTTC | 1 cut(s) | 39 |
| SaqAI | TTAA | 4 cut(s) | 203, 273, 809, 1011 |
| SatI | GCNGC | 8 cut(s) | 86, 181, 184, 672, 780, 966, 1116, 1119 |
| Sau3AI | GATC | 4 cut(s) | 585, 661, 951, 1063 |
| Sau96I | GGNCC | 1 cut(s) | 158 |
| SchI | GAGTC | 3 cut(s) | 864, 874, 1096 |
| ScrFI | CCNGG | 5 cut(s) | 550, 889, 920, 933, 970 |
| SduI | GDGCHC | 4 cut(s) | 95, 117, 736, 981 |
| SfaNI | GCATC | 3 cut(s) | 355, 654, 1180 |
| SfcI | CTRYAG | 1 cut(s) | 104 |
| SinI | GGWCC | 1 cut(s) | 158 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 763 |
| SmlI | CTYRAG | 1 cut(s) | 1077 |
| SmoI | CTYRAG | 1 cut(s) | 1077 |
| SphI | GCATGC | 1 cut(s) | 329 |
| Sse9I | AATT | 3 cut(s) | 594, 612, 1008 |
| SsiI | CCGC | 4 cut(s) | 150, 180, 183, 1169 |
| SspMI | CTAG | 1 cut(s) | 642 |
| SstI | GAGCTC | 1 cut(s) | 117 |
| StyD4I | CCNGG | 5 cut(s) | 548, 887, 918, 931, 968 |
| StyI | CCWWGG | 3 cut(s) | 576, 850, 859 |
| TaaI | ACNGT | 2 cut(s) | 747, 1136 |
| TaiI | ACGT | 1 cut(s) | 195 |
| TasI | AATT | 3 cut(s) | 594, 612, 1008 |
| TatI | WGTACW | 1 cut(s) | 696 |
| TauI | GCSGC | 2 cut(s) | 183, 186 |
| TfiI | GAWTC | 2 cut(s) | 793, 902 |
| Tru1I | TTAA | 4 cut(s) | 203, 273, 809, 1011 |
| Tru9I | TTAA | 4 cut(s) | 203, 273, 809, 1011 |
| TseFI | GTSAC | 1 cut(s) | 991 |
| TseI | GCWGC | 6 cut(s) | 85, 671, 779, 965, 1115, 1118 |
| Tsp45I | GTSAC | 1 cut(s) | 991 |
| TspDTI | ATGAA | 4 cut(s) | 27, 307, 543, 820 |
| TspGWI | ACGGA | 1 cut(s) | 92 |
| VpaK11BI | GGWCC | 1 cut(s) | 158 |
| XapI | RAATTY | 1 cut(s) | 612 |
| XceI | RCATGY | 4 cut(s) | 329, 387, 492, 1062 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 857 |
| XmiI | GTMKAC | 2 cut(s) | 136, 534 |
| XspI | CTAG | 1 cut(s) | 642 |