Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 81 - 201 | 5.3e-18 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 340 |
| AccII | CGCG | 2 cut(s) | 19, 300 |
| AciI | CCGC | 1 cut(s) | 671 |
| AcsI | RAATTY | 1 cut(s) | 6 |
| AcyI | GRCGYC | 1 cut(s) | 129 |
| AfaI | GTAC | 2 cut(s) | 553, 662 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 229, 340 |
| AflIII | ACRYGT | 1 cut(s) | 199 |
| AgsI | TTSAA | 6 cut(s) | 75, 197, 395, 523, 533, 612 |
| AjnI | CCWGG | 4 cut(s) | 112, 132, 268, 626 |
| AluBI | AGCT | 3 cut(s) | 281, 581, 652 |
| AluI | AGCT | 3 cut(s) | 281, 581, 652 |
| ApeKI | GCWGC | 3 cut(s) | 278, 578, 581 |
| ApoI | RAATTY | 1 cut(s) | 6 |
| AspLEI | GCGC | 2 cut(s) | 19, 187 |
| AspS9I | GGNCC | 1 cut(s) | 272 |
| AvaII | GGWCC | 1 cut(s) | 272 |
| BaeGI | GKGCMC | 1 cut(s) | 170 |
| BbvI | GCAGC | 3 cut(s) | 290, 568, 590 |
| BccI | CCATC | 3 cut(s) | 242, 501, 586 |
| BciT130I | CCWGG | 4 cut(s) | 114, 134, 270, 628 |
| BciVI | GTATCC | 1 cut(s) | 642 |
| BfaI | CTAG | 2 cut(s) | 408, 636 |
| BfmI | CTRYAG | 3 cut(s) | 276, 582, 645 |
| BfoI | RGCGCY | 1 cut(s) | 188 |
| BfuI | GTATCC | 1 cut(s) | 642 |
| BisI | GCNGC | 3 cut(s) | 279, 579, 582 |
| BlsI | GCNGC | 3 cut(s) | 280, 580, 583 |
| BmcAI | AGTACT | 1 cut(s) | 553 |
| Bme1390I | CCNGG | 4 cut(s) | 114, 134, 270, 628 |
| Bme18I | GGWCC | 1 cut(s) | 272 |
| BmgT120I | GGNCC | 1 cut(s) | 272 |
| BmrFI | CCNGG | 4 cut(s) | 114, 134, 270, 628 |
| BmsI | GCATC | 3 cut(s) | 220, 292, 467 |
| BpuEI | CTTGAG | 1 cut(s) | 517 |
| BsaHI | GRCGYC | 1 cut(s) | 129 |
| BsaJI | CCNNGG | 3 cut(s) | 157, 227, 488 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 229, 340 |
| BseBI | CCWGG | 4 cut(s) | 114, 134, 270, 628 |
| BseDI | CCNNGG | 3 cut(s) | 157, 227, 488 |
| BseGI | GGATG | 1 cut(s) | 211 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 229, 340 |
| BseMII | CTCAG | 1 cut(s) | 43 |
| BseRI | GAGGAG | 3 cut(s) | 303, 457, 474 |
| BseSI | GKGCMC | 1 cut(s) | 170 |
| BseXI | GCAGC | 3 cut(s) | 290, 568, 590 |
| Bsh1236I | CGCG | 2 cut(s) | 19, 300 |
| BslFI | GGGAC | 2 cut(s) | 506, 696 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 229, 340 |
| BsmFI | GGGAC | 2 cut(s) | 506, 696 |
| BsmI | GAATGC | 1 cut(s) | 580 |
| Bsp1286I | GDGCHC | 1 cut(s) | 170 |
| Bsp19I | CCATGG | 1 cut(s) | 488 |
| Bsp68I | TCGCGA | 1 cut(s) | 300 |
| BspACI | CCGC | 1 cut(s) | 671 |
| BspCNI | CTCAG | 1 cut(s) | 42 |
| BspFNI | CGCG | 2 cut(s) | 19, 300 |
| BspMAI | CTGCAG | 3 cut(s) | 280, 586, 649 |
| BssECI | CCNNGG | 3 cut(s) | 157, 227, 488 |
| BssNI | GRCGYC | 1 cut(s) | 129 |
| BssT1I | CCWWGG | 3 cut(s) | 157, 227, 488 |
| Bst2UI | CCWGG | 4 cut(s) | 114, 134, 270, 628 |
| Bst4CI | ACNGT | 1 cut(s) | 66 |
| BstACI | GRCGYC | 1 cut(s) | 129 |
| BstC8I | GCNNGC | 1 cut(s) | 669 |
| BstDEI | CTNAG | 2 cut(s) | 29, 601 |
| BstDSI | CCRYGG | 1 cut(s) | 488 |
| BstF5I | GGATG | 1 cut(s) | 211 |
| BstFNI | CGCG | 2 cut(s) | 19, 300 |
| BstH2I | RGCGCY | 1 cut(s) | 188 |
| BstHHI | GCGC | 2 cut(s) | 19, 187 |
| BstNI | CCWGG | 4 cut(s) | 114, 134, 270, 628 |
| BstSCI | CCNGG | 4 cut(s) | 112, 132, 268, 626 |
| BstSFI | CTRYAG | 3 cut(s) | 276, 582, 645 |
| BstSLI | GKGCMC | 1 cut(s) | 170 |
| BstUI | CGCG | 2 cut(s) | 19, 300 |
| BstV1I | GCAGC | 3 cut(s) | 290, 568, 590 |
| BsuI | GTATCC | 1 cut(s) | 642 |
| BtgI | CCRYGG | 1 cut(s) | 488 |
| BtgZI | GCGATG | 1 cut(s) | 315 |
| BtsCI | GGATG | 1 cut(s) | 211 |
| BtsIMutI | CAGTG | 2 cut(s) | 62, 243 |
| BtuMI | TCGCGA | 1 cut(s) | 300 |
| Cac8I | GCNNGC | 1 cut(s) | 669 |
| CfoI | GCGC | 2 cut(s) | 19, 187 |
| Cfr13I | GGNCC | 1 cut(s) | 272 |
| CseI | GACGC | 1 cut(s) | 118 |
| CsiI | ACCWGGT | 1 cut(s) | 626 |
| Csp6I | GTAC | 2 cut(s) | 552, 661 |
| CviAII | CATG | 2 cut(s) | 84, 489 |
| CviJI | RGCY | 4 cut(s) | 175, 281, 581, 652 |
| CviKI_1 | RGCY | 4 cut(s) | 175, 281, 581, 652 |
| CviQI | GTAC | 2 cut(s) | 552, 661 |
| DdeI | CTNAG | 2 cut(s) | 29, 601 |
| EciI | GGCGGA | 1 cut(s) | 686 |
| Eco130I | CCWWGG | 3 cut(s) | 157, 227, 488 |
| Eco47I | GGWCC | 1 cut(s) | 272 |
| EcoRII | CCWGG | 4 cut(s) | 112, 132, 268, 626 |
| EcoT14I | CCWWGG | 3 cut(s) | 157, 227, 488 |
| ErhI | CCWWGG | 3 cut(s) | 157, 227, 488 |
| FaeI | CATG | 2 cut(s) | 87, 492 |
| FaiI | YATR | 7 cut(s) | 80, 85, 123, 208, 363, 375, 490 |
| FaqI | GGGAC | 2 cut(s) | 506, 696 |
| FatI | CATG | 2 cut(s) | 83, 488 |
| Fnu4HI | GCNGC | 3 cut(s) | 279, 579, 582 |
| FokI | GGATG | 1 cut(s) | 198 |
| Fsp4HI | GCNGC | 3 cut(s) | 279, 579, 582 |
| FspBI | CTAG | 2 cut(s) | 408, 636 |
| GlaI | GCGC | 2 cut(s) | 18, 186 |
| GluI | GCNGC | 3 cut(s) | 279, 579, 582 |
| HaeII | RGCGCY | 1 cut(s) | 188 |
| HgaI | GACGC | 1 cut(s) | 118 |
| HhaI | GCGC | 2 cut(s) | 19, 187 |
| Hin1I | GRCGYC | 1 cut(s) | 129 |
| Hin1II | CATG | 2 cut(s) | 87, 492 |
| Hin6I | GCGC | 2 cut(s) | 17, 185 |
| HinP1I | GCGC | 2 cut(s) | 17, 185 |
| HincII | GTYRAC | 1 cut(s) | 241 |
| HindII | GTYRAC | 1 cut(s) | 241 |
| HinfI | GANTC | 7 cut(s) | 27, 88, 137, 193, 440, 473, 684 |
| HpaI | GTTAAC | 1 cut(s) | 241 |
| Hpy166II | GTNNAC | 1 cut(s) | 241 |
| Hpy188I | TCNGA | 1 cut(s) | 472 |
| Hpy188III | TCNNGA | 2 cut(s) | 141, 299 |
| Hpy8I | GTNNAC | 1 cut(s) | 241 |
| HpyAV | CCTTC | 2 cut(s) | 7, 563 |
| HpyCH4III | ACNGT | 1 cut(s) | 66 |
| HpyCH4IV | ACGT | 1 cut(s) | 199 |
| HpyCH4V | TGCA | 7 cut(s) | 278, 348, 541, 578, 584, 647, 667 |
| HpyF3I | CTNAG | 2 cut(s) | 29, 601 |
| HpySE526I | ACGT | 1 cut(s) | 199 |
| Hsp92I | GRCGYC | 1 cut(s) | 129 |
| Hsp92II | CATG | 2 cut(s) | 87, 492 |
| HspAI | GCGC | 2 cut(s) | 17, 185 |
| KspAI | GTTAAC | 1 cut(s) | 241 |
| Lsp1109I | GCAGC | 3 cut(s) | 290, 568, 590 |
| LweI | GCATC | 3 cut(s) | 220, 292, 467 |
| MabI | ACCWGGT | 1 cut(s) | 626 |
| MaeI | CTAG | 2 cut(s) | 408, 636 |
| MaeII | ACGT | 1 cut(s) | 199 |
| MaeIII | GTNAC | 1 cut(s) | 116 |
| MboII | GAAGA | 3 cut(s) | 144, 345, 535 |
| MhlI | GDGCHC | 1 cut(s) | 170 |
| MluCI | AATT | 6 cut(s) | 6, 75, 95, 349, 542, 691 |
| MlyI | GAGTC | 2 cut(s) | 21, 678 |
| MmeI | TCCRAC | 2 cut(s) | 395, 411 |
| MnlI | CCTC | 9 cut(s) | 186, 230, 234, 281, 348, 404, 478, 495, 651 |
| MseI | TTAA | 2 cut(s) | 234, 240 |
| MspA1I | CMGCKG | 1 cut(s) | 581 |
| MspR9I | CCNGG | 4 cut(s) | 114, 134, 270, 628 |
| Mva1269I | GAATGC | 1 cut(s) | 580 |
| MvaI | CCWGG | 4 cut(s) | 114, 134, 270, 628 |
| MvnI | CGCG | 2 cut(s) | 19, 300 |
| NcoI | CCATGG | 1 cut(s) | 488 |
| NlaIII | CATG | 2 cut(s) | 87, 492 |
| NruI | TCGCGA | 1 cut(s) | 300 |
| PctI | GAATGC | 1 cut(s) | 580 |
| PfeI | GAWTC | 5 cut(s) | 88, 137, 193, 440, 473 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 340 |
| PfoI | TCCNGGA | 1 cut(s) | 132 |
| PkrI | GCNGC | 3 cut(s) | 280, 580, 583 |
| PleI | GAGTC | 2 cut(s) | 21, 678 |
| PpsI | GAGTC | 2 cut(s) | 21, 678 |
| Psp6I | CCWGG | 4 cut(s) | 112, 132, 268, 626 |
| PspGI | CCWGG | 4 cut(s) | 112, 132, 268, 626 |
| PspPI | GGNCC | 1 cut(s) | 272 |
| PstI | CTGCAG | 3 cut(s) | 280, 586, 649 |
| PvuII | CAGCTG | 1 cut(s) | 581 |
| RruI | TCGCGA | 1 cut(s) | 300 |
| RsaI | GTAC | 2 cut(s) | 553, 662 |
| RsaNI | GTAC | 2 cut(s) | 552, 661 |
| SaqAI | TTAA | 2 cut(s) | 234, 240 |
| SatI | GCNGC | 3 cut(s) | 279, 579, 582 |
| Sau96I | GGNCC | 1 cut(s) | 272 |
| ScaI | AGTACT | 1 cut(s) | 553 |
| SchI | GAGTC | 2 cut(s) | 21, 678 |
| ScrFI | CCNGG | 4 cut(s) | 114, 134, 270, 628 |
| SduI | GDGCHC | 1 cut(s) | 170 |
| SexAI | ACCWGGT | 1 cut(s) | 626 |
| SfaNI | GCATC | 3 cut(s) | 220, 292, 467 |
| SfcI | CTRYAG | 3 cut(s) | 276, 582, 645 |
| SinI | GGWCC | 1 cut(s) | 272 |
| SmlI | CTYRAG | 1 cut(s) | 496 |
| SmoI | CTYRAG | 1 cut(s) | 496 |
| Sse9I | AATT | 6 cut(s) | 6, 75, 95, 349, 542, 691 |
| SsiI | CCGC | 1 cut(s) | 671 |
| SspMI | CTAG | 2 cut(s) | 408, 636 |
| StyD4I | CCNGG | 4 cut(s) | 112, 132, 268, 626 |
| StyI | CCWWGG | 3 cut(s) | 157, 227, 488 |
| TaaI | ACNGT | 1 cut(s) | 66 |
| TaiI | ACGT | 1 cut(s) | 202 |
| TasI | AATT | 6 cut(s) | 6, 75, 95, 349, 542, 691 |
| TatI | WGTACW | 1 cut(s) | 551 |
| TfiI | GAWTC | 5 cut(s) | 88, 137, 193, 440, 473 |
| Tru1I | TTAA | 2 cut(s) | 234, 240 |
| Tru9I | TTAA | 2 cut(s) | 234, 240 |
| TscAI | CASTG | 2 cut(s) | 69, 250 |
| TseI | GCWGC | 3 cut(s) | 278, 578, 581 |
| TspRI | CASTG | 2 cut(s) | 69, 250 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 340 |
| VpaK11BI | GGWCC | 1 cut(s) | 272 |
| XapI | RAATTY | 1 cut(s) | 6 |
| XspI | CTAG | 2 cut(s) | 408, 636 |
| ZrmI | AGTACT | 1 cut(s) | 553 |