Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 172 - 266 | 2.8e-08 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 217 |
| AccIII | TCCGGA | 1 cut(s) | 148 |
| AciI | CCGC | 4 cut(s) | 16, 356, 985, 1004 |
| AclI | AACGTT | 1 cut(s) | 815 |
| AcoI | YGGCCR | 1 cut(s) | 34 |
| AcsI | RAATTY | 3 cut(s) | 260, 580, 736 |
| AcyI | GRCGYC | 1 cut(s) | 218 |
| AfaI | GTAC | 3 cut(s) | 40, 726, 1034 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 467, 576 |
| AflIII | ACRYGT | 1 cut(s) | 363 |
| AjnI | CCWGG | 1 cut(s) | 403 |
| AluBI | AGCT | 7 cut(s) | 238, 337, 511, 576, 689, 779, 866 |
| AluI | AGCT | 7 cut(s) | 238, 337, 511, 576, 689, 779, 866 |
| Alw26I | GTCTC | 2 cut(s) | 719, 949 |
| Aor13HI | TCCGGA | 1 cut(s) | 148 |
| AoxI | GGCC | 2 cut(s) | 34, 992 |
| ApeKI | GCWGC | 1 cut(s) | 508 |
| ApoI | RAATTY | 3 cut(s) | 260, 580, 736 |
| AspLEI | GCGC | 1 cut(s) | 220 |
| AspS9I | GGNCC | 1 cut(s) | 401 |
| AsuC2I | CCSGG | 1 cut(s) | 505 |
| AsuHPI | GGTGA | 2 cut(s) | 245, 479 |
| AsuNHI | GCTAGC | 1 cut(s) | 352 |
| AvaII | GGWCC | 1 cut(s) | 401 |
| AxyI | CCTNAGG | 1 cut(s) | 538 |
| BanI | GGYRCC | 1 cut(s) | 217 |
| BanII | GRGCYC | 1 cut(s) | 70 |
| BbsI | GAAGAC | 1 cut(s) | 435 |
| BbvI | GCAGC | 1 cut(s) | 520 |
| BccI | CCATC | 2 cut(s) | 781, 910 |
| BceAI | ACGGC | 2 cut(s) | 21, 45 |
| BciT130I | CCWGG | 1 cut(s) | 405 |
| BcnI | CCSGG | 1 cut(s) | 505 |
| BcoDI | GTCTC | 2 cut(s) | 719, 949 |
| BfaI | CTAG | 6 cut(s) | 159, 353, 639, 840, 996, 1073 |
| BfoI | RGCGCY | 1 cut(s) | 221 |
| BisI | GCNGC | 3 cut(s) | 17, 357, 509 |
| BlsI | GCNGC | 3 cut(s) | 18, 358, 510 |
| Bme1390I | CCNGG | 2 cut(s) | 405, 505 |
| Bme18I | GGWCC | 1 cut(s) | 401 |
| BmgT120I | GGNCC | 1 cut(s) | 401 |
| BmiI | GGNNCC | 3 cut(s) | 219, 477, 650 |
| BmrFI | CCNGG | 2 cut(s) | 405, 505 |
| BmsI | GCATC | 3 cut(s) | 280, 418, 523 |
| BmtI | GCTAGC | 1 cut(s) | 356 |
| BpiI | GAAGAC | 1 cut(s) | 435 |
| Bpu10I | CCTNAGC | 1 cut(s) | 572 |
| BpuEI | CTTGAG | 1 cut(s) | 54 |
| BpuMI | CCSGG | 1 cut(s) | 505 |
| BsaHI | GRCGYC | 1 cut(s) | 218 |
| BsaJI | CCNNGG | 1 cut(s) | 62 |
| BsaWI | WCCGGW | 1 cut(s) | 148 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 547, 577 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 467, 576 |
| Bse21I | CCTNAGG | 1 cut(s) | 538 |
| BseAI | TCCGGA | 1 cut(s) | 148 |
| BseBI | CCWGG | 1 cut(s) | 405 |
| BseDI | CCNNGG | 1 cut(s) | 62 |
| BseGI | GGATG | 2 cut(s) | 433, 921 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 467, 576 |
| BseMII | CTCAG | 3 cut(s) | 183, 347, 552 |
| BseRI | GAGGAG | 1 cut(s) | 319 |
| BseXI | GCAGC | 1 cut(s) | 520 |
| BshFI | GGCC | 2 cut(s) | 36, 994 |
| BshNI | GGYRCC | 1 cut(s) | 217 |
| BsiSI | CCGG | 2 cut(s) | 149, 505 |
| BslFI | GGGAC | 2 cut(s) | 553, 984 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 467, 576 |
| BsmAI | GTCTC | 2 cut(s) | 719, 949 |
| BsmFI | GGGAC | 2 cut(s) | 553, 984 |
| BsnI | GGCC | 2 cut(s) | 36, 994 |
| Bsp1286I | GDGCHC | 1 cut(s) | 70 |
| Bsp13I | TCCGGA | 1 cut(s) | 148 |
| BspACI | CCGC | 4 cut(s) | 16, 356, 985, 1004 |
| BspANI | GGCC | 2 cut(s) | 36, 994 |
| BspCNI | CTCAG | 3 cut(s) | 184, 346, 551 |
| BspEI | TCCGGA | 1 cut(s) | 148 |
| BspLI | GGNNCC | 3 cut(s) | 219, 477, 650 |
| BspOI | GCTAGC | 1 cut(s) | 356 |
| BspT107I | GGYRCC | 1 cut(s) | 217 |
| BssECI | CCNNGG | 1 cut(s) | 62 |
| BssNI | GRCGYC | 1 cut(s) | 218 |
| BssT1I | CCWWGG | 1 cut(s) | 62 |
| Bst2UI | CCWGG | 1 cut(s) | 405 |
| Bst4CI | ACNGT | 2 cut(s) | 470, 610 |
| Bst6I | CTCTTC | 1 cut(s) | 383 |
| BstACI | GRCGYC | 1 cut(s) | 218 |
| BstC8I | GCNNGC | 3 cut(s) | 34, 354, 691 |
| BstDEI | CTNAG | 6 cut(s) | 192, 278, 333, 538, 572, 694 |
| BstF5I | GGATG | 2 cut(s) | 433, 921 |
| BstH2I | RGCGCY | 1 cut(s) | 221 |
| BstHHI | GCGC | 1 cut(s) | 220 |
| BstMAI | GTCTC | 2 cut(s) | 719, 949 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 16, 991 |
| BstNI | CCWGG | 1 cut(s) | 405 |
| BstNSI | RCATGY | 1 cut(s) | 367 |
| BstSCI | CCNGG | 2 cut(s) | 403, 503 |
| BstV1I | GCAGC | 1 cut(s) | 520 |
| BstV2I | GAAGAC | 1 cut(s) | 435 |
| Bsu36I | CCTNAGG | 1 cut(s) | 538 |
| BsuRI | GGCC | 2 cut(s) | 36, 994 |
| BtsCI | GGATG | 2 cut(s) | 433, 921 |
| BtsI | GCAGTG | 1 cut(s) | 946 |
| BtsIMutI | CAGTG | 1 cut(s) | 946 |
| Cac8I | GCNNGC | 3 cut(s) | 34, 354, 691 |
| CfoI | GCGC | 1 cut(s) | 220 |
| Cfr13I | GGNCC | 1 cut(s) | 401 |
| Csp6I | GTAC | 3 cut(s) | 39, 725, 1033 |
| CviAII | CATG | 3 cut(s) | 114, 364, 491 |
| CviQI | GTAC | 3 cut(s) | 39, 725, 1033 |
| DdeI | CTNAG | 6 cut(s) | 192, 278, 333, 538, 572, 694 |
| DinI | GGCGCC | 1 cut(s) | 219 |
| EaeI | YGGCCR | 1 cut(s) | 34 |
| Eam1104I | CTCTTC | 1 cut(s) | 383 |
| EarI | CTCTTC | 1 cut(s) | 383 |
| Eco130I | CCWWGG | 1 cut(s) | 62 |
| Eco24I | GRGCYC | 1 cut(s) | 70 |
| Eco47I | GGWCC | 1 cut(s) | 401 |
| Eco81I | CCTNAGG | 1 cut(s) | 538 |
| EcoRI | GAATTC | 1 cut(s) | 580 |
| EcoRII | CCWGG | 1 cut(s) | 403 |
| EcoT14I | CCWWGG | 1 cut(s) | 62 |
| EcoT38I | GRGCYC | 1 cut(s) | 70 |
| EgeI | GGCGCC | 1 cut(s) | 219 |
| EheI | GGCGCC | 1 cut(s) | 219 |
| ErhI | CCWWGG | 1 cut(s) | 62 |
| FaeI | CATG | 3 cut(s) | 117, 367, 494 |
| FalI | AAGNNNNNCTT | 1 cut(s) | 35 |
| FaqI | GGGAC | 2 cut(s) | 553, 984 |
| FatI | CATG | 3 cut(s) | 113, 363, 490 |
| FauI | CCCGC | 1 cut(s) | 1011 |
| Fnu4HI | GCNGC | 3 cut(s) | 17, 357, 509 |
| FokI | GGATG | 2 cut(s) | 440, 928 |
| FriOI | GRGCYC | 1 cut(s) | 70 |
| Fsp4HI | GCNGC | 3 cut(s) | 17, 357, 509 |
| FspBI | CTAG | 6 cut(s) | 159, 353, 639, 840, 996, 1073 |
| GlaI | GCGC | 1 cut(s) | 219 |
| GluI | GCNGC | 3 cut(s) | 17, 357, 509 |
| HaeII | RGCGCY | 1 cut(s) | 221 |
| HaeIII | GGCC | 2 cut(s) | 36, 994 |
| HapII | CCGG | 2 cut(s) | 149, 505 |
| HhaI | GCGC | 1 cut(s) | 220 |
| Hin1I | GRCGYC | 1 cut(s) | 218 |
| Hin1II | CATG | 3 cut(s) | 117, 367, 494 |
| Hin6I | GCGC | 1 cut(s) | 218 |
| HinP1I | GCGC | 1 cut(s) | 218 |
| HinfI | GANTC | 2 cut(s) | 671, 801 |
| HpaII | CCGG | 2 cut(s) | 149, 505 |
| HphI | GGTGA | 2 cut(s) | 245, 479 |
| Hpy166II | GTNNAC | 4 cut(s) | 369, 487, 819, 850 |
| Hpy188I | TCNGA | 2 cut(s) | 172, 202 |
| Hpy188III | TCNNGA | 4 cut(s) | 149, 425, 499, 530 |
| Hpy8I | GTNNAC | 4 cut(s) | 369, 487, 819, 850 |
| HpyAV | CCTTC | 5 cut(s) | 231, 253, 598, 758, 888 |
| HpyCH4III | ACNGT | 2 cut(s) | 470, 610 |
| HpyCH4IV | ACGT | 1 cut(s) | 815 |
| HpyCH4V | TGCA | 4 cut(s) | 452, 494, 812, 1040 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 16, 991 |
| HpyF3I | CTNAG | 6 cut(s) | 192, 278, 333, 538, 572, 694 |
| HpySE526I | ACGT | 1 cut(s) | 815 |
| Hsp92I | GRCGYC | 1 cut(s) | 218 |
| Hsp92II | CATG | 3 cut(s) | 117, 367, 494 |
| HspAI | GCGC | 1 cut(s) | 218 |
| KasI | GGCGCC | 1 cut(s) | 217 |
| Kpn2I | TCCGGA | 1 cut(s) | 148 |
| LmnI | GCTCC | 2 cut(s) | 463, 481 |
| Lsp1109I | GCAGC | 1 cut(s) | 520 |
| LweI | GCATC | 3 cut(s) | 280, 418, 523 |
| MaeI | CTAG | 6 cut(s) | 159, 353, 639, 840, 996, 1073 |
| MaeII | ACGT | 1 cut(s) | 815 |
| MaeIII | GTNAC | 3 cut(s) | 52, 137, 407 |
| MboII | GAAGA | 6 cut(s) | 104, 216, 400, 435, 576, 1019 |
| MfeI | CAATTG | 1 cut(s) | 709 |
| MhlI | GDGCHC | 1 cut(s) | 70 |
| Mly113I | GGCGCC | 1 cut(s) | 218 |
| MmeI | TCCRAC | 1 cut(s) | 642 |
| MnlI | CCTC | 8 cut(s) | 135, 195, 238, 261, 340, 547, 635, 846 |
| MroI | TCCGGA | 1 cut(s) | 148 |
| MseI | TTAA | 2 cut(s) | 83, 342 |
| MslI | CAYNNNNRTG | 1 cut(s) | 279 |
| MspI | CCGG | 2 cut(s) | 149, 505 |
| MspR9I | CCNGG | 2 cut(s) | 405, 505 |
| MunI | CAATTG | 1 cut(s) | 709 |
| MvaI | CCWGG | 1 cut(s) | 405 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 16, 991 |
| NarI | GGCGCC | 1 cut(s) | 218 |
| NciI | CCSGG | 1 cut(s) | 505 |
| NheI | GCTAGC | 1 cut(s) | 352 |
| NlaIII | CATG | 3 cut(s) | 117, 367, 494 |
| NlaIV | GGNNCC | 3 cut(s) | 219, 477, 650 |
| NmeAIII | GCCGAG | 1 cut(s) | 1037 |
| NmuCI | GTSAC | 2 cut(s) | 137, 407 |
| NspI | RCATGY | 1 cut(s) | 367 |
| PciI | ACATGT | 1 cut(s) | 363 |
| PfeI | GAWTC | 2 cut(s) | 671, 801 |
| PkrI | GCNGC | 3 cut(s) | 18, 358, 510 |
| PluTI | GGCGCC | 1 cut(s) | 221 |
| PscI | ACATGT | 1 cut(s) | 363 |
| Psp1406I | AACGTT | 1 cut(s) | 815 |
| Psp6I | CCWGG | 1 cut(s) | 403 |
| PspGI | CCWGG | 1 cut(s) | 403 |
| PspN4I | GGNNCC | 3 cut(s) | 219, 477, 650 |
| PspPI | GGNCC | 1 cut(s) | 401 |
| RsaI | GTAC | 3 cut(s) | 40, 726, 1034 |
| RsaNI | GTAC | 3 cut(s) | 39, 725, 1033 |
| RseI | CAYNNNNRTG | 1 cut(s) | 279 |
| SaqAI | TTAA | 2 cut(s) | 83, 342 |
| SatI | GCNGC | 3 cut(s) | 17, 357, 509 |
| Sau96I | GGNCC | 1 cut(s) | 401 |
| ScrFI | CCNGG | 2 cut(s) | 405, 505 |
| SduI | GDGCHC | 1 cut(s) | 70 |
| SfaNI | GCATC | 3 cut(s) | 280, 418, 523 |
| SfoI | GGCGCC | 1 cut(s) | 219 |
| SinI | GGWCC | 1 cut(s) | 401 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 279 |
| SmlI | CTYRAG | 1 cut(s) | 69 |
| SmoI | CTYRAG | 1 cut(s) | 69 |
| SsiI | CCGC | 4 cut(s) | 16, 356, 985, 1004 |
| SspDI | GGCGCC | 1 cut(s) | 217 |
| SspMI | CTAG | 6 cut(s) | 159, 353, 639, 840, 996, 1073 |
| StyD4I | CCNGG | 2 cut(s) | 403, 503 |
| StyI | CCWWGG | 1 cut(s) | 62 |
| TaaI | ACNGT | 2 cut(s) | 470, 610 |
| TaiI | ACGT | 1 cut(s) | 818 |
| TaqI | TCGA | 3 cut(s) | 316, 529, 742 |
| TatI | WGTACW | 2 cut(s) | 724, 1032 |
| TauI | GCSGC | 2 cut(s) | 19, 359 |
| TfiI | GAWTC | 2 cut(s) | 671, 801 |
| Tru1I | TTAA | 2 cut(s) | 83, 342 |
| Tru9I | TTAA | 2 cut(s) | 83, 342 |
| TscAI | CASTG | 1 cut(s) | 946 |
| TseFI | GTSAC | 2 cut(s) | 137, 407 |
| TseI | GCWGC | 1 cut(s) | 508 |
| Tsp45I | GTSAC | 2 cut(s) | 137, 407 |
| TspDTI | ATGAA | 4 cut(s) | 102, 273, 749, 875 |
| TspRI | CASTG | 1 cut(s) | 946 |
| VpaK11BI | GGWCC | 1 cut(s) | 401 |
| XapI | RAATTY | 3 cut(s) | 260, 580, 736 |
| XceI | RCATGY | 1 cut(s) | 367 |
| XspI | CTAG | 6 cut(s) | 159, 353, 639, 840, 996, 1073 |