ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 80, 117 |
| AcoI | YGGCCR | 1 cut(s) | 386 |
| AgsI | TTSAA | 3 cut(s) | 125, 245, 338 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 312 |
| AhlI | ACTAGT | 2 cut(s) | 89, 395 |
| AjiI | CACGTC | 1 cut(s) | 101 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 488, 520 |
| AluBI | AGCT | 1 cut(s) | 141 |
| AluI | AGCT | 1 cut(s) | 141 |
| AoxI | GGCC | 2 cut(s) | 386, 472 |
| ApeKI | GCWGC | 1 cut(s) | 214 |
| AseI | ATTAAT | 1 cut(s) | 132 |
| AspS9I | GGNCC | 3 cut(s) | 114, 149, 473 |
| AsuHPI | GGTGA | 3 cut(s) | 179, 285, 445 |
| AvaII | GGWCC | 2 cut(s) | 114, 149 |
| BaeGI | GKGCMC | 1 cut(s) | 513 |
| BanII | GRGCYC | 1 cut(s) | 193 |
| BauI | CACGAG | 1 cut(s) | 222 |
| BbvI | GCAGC | 1 cut(s) | 201 |
| BccI | CCATC | 1 cut(s) | 247 |
| BclI | TGATCA | 1 cut(s) | 427 |
| BcuI | ACTAGT | 2 cut(s) | 89, 395 |
| BfaI | CTAG | 3 cut(s) | 15, 90, 396 |
| BisI | GCNGC | 2 cut(s) | 81, 215 |
| BlsI | GCNGC | 2 cut(s) | 82, 216 |
| Bme18I | GGWCC | 2 cut(s) | 114, 149 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 312 |
| BmgBI | CACGTC | 1 cut(s) | 101 |
| BmgT120I | GGNCC | 3 cut(s) | 114, 149, 473 |
| BmiI | GGNNCC | 1 cut(s) | 190 |
| BsaBI | GATNNNNATC | 1 cut(s) | 432 |
| BsaJI | CCNNGG | 1 cut(s) | 371 |
| Bse1I | ACTGG | 1 cut(s) | 208 |
| Bse3DI | GCAATG | 1 cut(s) | 559 |
| Bse8I | GATNNNNATC | 1 cut(s) | 432 |
| BseDI | CCNNGG | 1 cut(s) | 371 |
| BseGI | GGATG | 1 cut(s) | 262 |
| BseJI | GATNNNNATC | 1 cut(s) | 432 |
| BseMI | GCAATG | 1 cut(s) | 559 |
| BseMII | CTCAG | 2 cut(s) | 159, 528 |
| BseNI | ACTGG | 1 cut(s) | 208 |
| BseRI | GAGGAG | 1 cut(s) | 333 |
| BseSI | GKGCMC | 1 cut(s) | 513 |
| BseXI | GCAGC | 1 cut(s) | 201 |
| BsgI | GTGCAG | 1 cut(s) | 53 |
| Bsh1285I | CGRYCG | 1 cut(s) | 316 |
| BshFI | GGCC | 2 cut(s) | 388, 474 |
| BsiEI | CGRYCG | 1 cut(s) | 316 |
| BsnI | GGCC | 2 cut(s) | 388, 474 |
| Bsp1286I | GDGCHC | 2 cut(s) | 193, 513 |
| Bsp143I | GATC | 2 cut(s) | 280, 427 |
| Bsp19I | CCATGG | 1 cut(s) | 371 |
| BspACI | CCGC | 2 cut(s) | 80, 117 |
| BspANI | GGCC | 2 cut(s) | 388, 474 |
| BspCNI | CTCAG | 2 cut(s) | 158, 527 |
| BspLI | GGNNCC | 1 cut(s) | 190 |
| BsrDI | GCAATG | 1 cut(s) | 559 |
| BsrI | ACTGG | 1 cut(s) | 208 |
| BssECI | CCNNGG | 1 cut(s) | 371 |
| BssMI | GATC | 2 cut(s) | 280, 427 |
| BssSI | CACGAG | 1 cut(s) | 222 |
| BssT1I | CCWWGG | 1 cut(s) | 371 |
| Bst2BI | CACGAG | 1 cut(s) | 222 |
| Bst4CI | ACNGT | 2 cut(s) | 297, 314 |
| Bst6I | CTCTTC | 1 cut(s) | 427 |
| BstDEI | CTNAG | 3 cut(s) | 145, 184, 514 |
| BstDSI | CCRYGG | 1 cut(s) | 371 |
| BstEII | GGTNACC | 1 cut(s) | 291 |
| BstF5I | GGATG | 1 cut(s) | 262 |
| BstKTI | GATC | 2 cut(s) | 283, 430 |
| BstMBI | GATC | 2 cut(s) | 280, 427 |
| BstMCI | CGRYCG | 1 cut(s) | 316 |
| BstPI | GGTNACC | 1 cut(s) | 291 |
| BstSLI | GKGCMC | 1 cut(s) | 513 |
| BstV1I | GCAGC | 1 cut(s) | 201 |
| BsuRI | GGCC | 2 cut(s) | 388, 474 |
| BtgI | CCRYGG | 1 cut(s) | 371 |
| BtrI | CACGTC | 1 cut(s) | 101 |
| BtsCI | GGATG | 1 cut(s) | 262 |
| Cfr13I | GGNCC | 3 cut(s) | 114, 149, 473 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 75, 110 |
| CviAII | CATG | 4 cut(s) | 59, 194, 303, 372 |
| CviJI | RGCY | 7 cut(s) | 141, 191, 214, 327, 388, 474, 539 |
| CviKI_1 | RGCY | 7 cut(s) | 141, 191, 214, 327, 388, 474, 539 |
| DdeI | CTNAG | 3 cut(s) | 145, 184, 514 |
| DpnI | GATC | 2 cut(s) | 282, 429 |
| DpnII | GATC | 2 cut(s) | 280, 427 |
| DriI | GACNNNNNGTC | 1 cut(s) | 312 |
| EaeI | YGGCCR | 1 cut(s) | 386 |
| Eam1104I | CTCTTC | 1 cut(s) | 427 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 312 |
| EarI | CTCTTC | 1 cut(s) | 427 |
| Eco130I | CCWWGG | 1 cut(s) | 371 |
| Eco24I | GRGCYC | 1 cut(s) | 193 |
| Eco32I | GATATC | 1 cut(s) | 6 |
| Eco47I | GGWCC | 2 cut(s) | 114, 149 |
| Eco91I | GGTNACC | 1 cut(s) | 291 |
| EcoO109I | RGGNCCY | 1 cut(s) | 149 |
| EcoO65I | GGTNACC | 1 cut(s) | 291 |
| EcoRV | GATATC | 1 cut(s) | 6 |
| EcoT14I | CCWWGG | 1 cut(s) | 371 |
| EcoT38I | GRGCYC | 1 cut(s) | 193 |
| ErhI | CCWWGG | 1 cut(s) | 371 |
| FaeI | CATG | 4 cut(s) | 62, 197, 306, 375 |
| FatI | CATG | 4 cut(s) | 58, 193, 302, 371 |
| FbaI | TGATCA | 1 cut(s) | 427 |
| Fnu4HI | GCNGC | 2 cut(s) | 81, 215 |
| FokI | GGATG | 1 cut(s) | 269 |
| FriOI | GRGCYC | 1 cut(s) | 193 |
| Fsp4HI | GCNGC | 2 cut(s) | 81, 215 |
| FspBI | CTAG | 3 cut(s) | 15, 90, 396 |
| GluI | GCNGC | 2 cut(s) | 81, 215 |
| HaeIII | GGCC | 2 cut(s) | 388, 474 |
| Hin1II | CATG | 4 cut(s) | 62, 197, 306, 375 |
| HincII | GTYRAC | 1 cut(s) | 20 |
| HindII | GTYRAC | 1 cut(s) | 20 |
| HindIII | AAGCTT | 1 cut(s) | 139 |
| HinfI | GANTC | 2 cut(s) | 380, 478 |
| HphI | GGTGA | 3 cut(s) | 179, 285, 445 |
| Hpy166II | GTNNAC | 2 cut(s) | 20, 300 |
| Hpy188I | TCNGA | 3 cut(s) | 427, 495, 517 |
| Hpy188III | TCNNGA | 1 cut(s) | 442 |
| Hpy8I | GTNNAC | 2 cut(s) | 20, 300 |
| Hpy99I | CGWCG | 1 cut(s) | 105 |
| HpyAV | CCTTC | 1 cut(s) | 493 |
| HpyCH4III | ACNGT | 2 cut(s) | 297, 314 |
| HpyCH4IV | ACGT | 1 cut(s) | 100 |
| HpyCH4V | TGCA | 3 cut(s) | 34, 179, 467 |
| HpyF3I | CTNAG | 3 cut(s) | 145, 184, 514 |
| HpySE526I | ACGT | 1 cut(s) | 100 |
| Hsp92II | CATG | 4 cut(s) | 62, 197, 306, 375 |
| Ksp22I | TGATCA | 1 cut(s) | 427 |
| Kzo9I | GATC | 2 cut(s) | 280, 427 |
| LmnI | GCTCC | 1 cut(s) | 188 |
| LpnPI | CCDG | 5 cut(s) | 50, 132, 189, 244, 337 |
| Lsp1109I | GCAGC | 1 cut(s) | 201 |
| MaeI | CTAG | 3 cut(s) | 15, 90, 396 |
| MaeII | ACGT | 1 cut(s) | 100 |
| MaeIII | GTNAC | 2 cut(s) | 233, 291 |
| MalI | GATC | 2 cut(s) | 282, 429 |
| MboI | GATC | 2 cut(s) | 280, 427 |
| MboII | GAAGA | 3 cut(s) | 3, 414, 508 |
| MfeI | CAATTG | 1 cut(s) | 120 |
| MhlI | GDGCHC | 2 cut(s) | 193, 513 |
| MluCI | AATT | 4 cut(s) | 120, 129, 276, 528 |
| MlyI | GAGTC | 1 cut(s) | 374 |
| MmeI | TCCRAC | 1 cut(s) | 327 |
| MnlI | CCTC | 3 cut(s) | 311, 447, 541 |
| MseI | TTAA | 4 cut(s) | 132, 174, 285, 525 |
| MunI | CAATTG | 1 cut(s) | 120 |
| NcoI | CCATGG | 1 cut(s) | 371 |
| NdeII | GATC | 2 cut(s) | 280, 427 |
| NlaIII | CATG | 4 cut(s) | 62, 197, 306, 375 |
| NlaIV | GGNNCC | 1 cut(s) | 190 |
| NmuCI | GTSAC | 2 cut(s) | 233, 291 |
| PfeI | GAWTC | 1 cut(s) | 478 |
| PkrI | GCNGC | 2 cut(s) | 82, 216 |
| PleI | GAGTC | 1 cut(s) | 374 |
| PpsI | GAGTC | 1 cut(s) | 374 |
| PpuMI | RGGWCCY | 1 cut(s) | 149 |
| PshBI | ATTAAT | 1 cut(s) | 132 |
| Psp5II | RGGWCCY | 1 cut(s) | 149 |
| PspEI | GGTNACC | 1 cut(s) | 291 |
| PspN4I | GGNNCC | 1 cut(s) | 190 |
| PspPI | GGNCC | 3 cut(s) | 114, 149, 473 |
| PspPPI | RGGWCCY | 1 cut(s) | 149 |
| SaqAI | TTAA | 4 cut(s) | 132, 174, 285, 525 |
| SatI | GCNGC | 2 cut(s) | 81, 215 |
| Sau3AI | GATC | 2 cut(s) | 280, 427 |
| Sau96I | GGNCC | 3 cut(s) | 114, 149, 473 |
| SchI | GAGTC | 1 cut(s) | 374 |
| SduI | GDGCHC | 2 cut(s) | 193, 513 |
| SetI | ASST | 4 cut(s) | 103, 143, 151, 356 |
| SinI | GGWCC | 2 cut(s) | 114, 149 |
| SpeI | ACTAGT | 2 cut(s) | 89, 395 |
| Sse9I | AATT | 4 cut(s) | 120, 129, 276, 528 |
| SsiI | CCGC | 2 cut(s) | 80, 117 |
| SspMI | CTAG | 3 cut(s) | 15, 90, 396 |
| StyI | CCWWGG | 1 cut(s) | 371 |
| TaaI | ACNGT | 2 cut(s) | 297, 314 |
| TaiI | ACGT | 1 cut(s) | 103 |
| TaqI | TCGA | 1 cut(s) | 316 |
| TasI | AATT | 4 cut(s) | 120, 129, 276, 528 |
| TauI | GCSGC | 1 cut(s) | 83 |
| TfiI | GAWTC | 1 cut(s) | 478 |
| Tru1I | TTAA | 4 cut(s) | 132, 174, 285, 525 |
| Tru9I | TTAA | 4 cut(s) | 132, 174, 285, 525 |
| TseFI | GTSAC | 2 cut(s) | 233, 291 |
| TseI | GCWGC | 1 cut(s) | 214 |
| Tsp45I | GTSAC | 2 cut(s) | 233, 291 |
| TspDTI | ATGAA | 1 cut(s) | 210 |
| TspGWI | ACGGA | 1 cut(s) | 476 |
| VpaK11BI | GGWCC | 2 cut(s) | 114, 149 |
| VspI | ATTAAT | 1 cut(s) | 132 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 200 |
| XspI | CTAG | 3 cut(s) | 15, 90, 396 |