Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 48 - 166 | 6.5e-16 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 234 |
| AccII | CGCG | 1 cut(s) | 82 |
| AciI | CCGC | 3 cut(s) | 82, 119, 186 |
| AclWI | GGATC | 2 cut(s) | 140, 158 |
| AcsI | RAATTY | 3 cut(s) | 225, 485, 533 |
| AfaI | GTAC | 1 cut(s) | 34 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 125 |
| AgsI | TTSAA | 3 cut(s) | 284, 364, 508 |
| AjnI | CCWGG | 1 cut(s) | 216 |
| AluBI | AGCT | 1 cut(s) | 176 |
| AluI | AGCT | 1 cut(s) | 176 |
| Alw26I | GTCTC | 3 cut(s) | 120, 215, 561 |
| AlwI | GGATC | 2 cut(s) | 140, 158 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 167 |
| AoxI | GGCC | 1 cut(s) | 84 |
| ApaI | GGGCCC | 1 cut(s) | 88 |
| ApeKI | GCWGC | 2 cut(s) | 38, 239 |
| ApoI | RAATTY | 3 cut(s) | 225, 485, 533 |
| AspLEI | GCGC | 1 cut(s) | 82 |
| AspS9I | GGNCC | 2 cut(s) | 84, 85 |
| AsuC2I | CCSGG | 2 cut(s) | 44, 126 |
| BaeGI | GKGCMC | 1 cut(s) | 88 |
| BanII | GRGCYC | 1 cut(s) | 88 |
| BbvCI | CCTCAGC | 1 cut(s) | 264 |
| BbvI | GCAGC | 2 cut(s) | 50, 226 |
| BccI | CCATC | 3 cut(s) | 143, 200, 384 |
| BciT130I | CCWGG | 1 cut(s) | 218 |
| BciVI | GTATCC | 1 cut(s) | 407 |
| BcnI | CCSGG | 2 cut(s) | 44, 126 |
| BcoDI | GTCTC | 3 cut(s) | 120, 215, 561 |
| BfaI | CTAG | 4 cut(s) | 171, 272, 564, 579 |
| BfmI | CTRYAG | 1 cut(s) | 36 |
| BfuI | GTATCC | 1 cut(s) | 407 |
| BisI | GCNGC | 2 cut(s) | 39, 240 |
| BlsI | GCNGC | 2 cut(s) | 40, 241 |
| Bme1390I | CCNGG | 3 cut(s) | 44, 126, 218 |
| BmgT120I | GGNCC | 2 cut(s) | 84, 85 |
| BmiI | GGNNCC | 2 cut(s) | 86, 87 |
| BmrFI | CCNGG | 3 cut(s) | 44, 126, 218 |
| BmsI | GCATC | 1 cut(s) | 250 |
| Bpu10I | CCTNAGC | 1 cut(s) | 264 |
| BpuMI | CCSGG | 2 cut(s) | 44, 126 |
| BsaI | GGTCTC | 1 cut(s) | 215 |
| BsaJI | CCNNGG | 4 cut(s) | 42, 217, 383, 401 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 379, 409 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 125 |
| Bse3DI | GCAATG | 1 cut(s) | 306 |
| BseBI | CCWGG | 1 cut(s) | 218 |
| BseDI | CCNNGG | 4 cut(s) | 42, 217, 383, 401 |
| BseGI | GGATG | 3 cut(s) | 154, 411, 542 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 125 |
| BseMI | GCAATG | 1 cut(s) | 306 |
| BseMII | CTCAG | 1 cut(s) | 255 |
| BseSI | GKGCMC | 1 cut(s) | 88 |
| BseXI | GCAGC | 2 cut(s) | 50, 226 |
| BseYI | CCCAGC | 1 cut(s) | 58 |
| Bsh1236I | CGCG | 1 cut(s) | 82 |
| BshFI | GGCC | 1 cut(s) | 86 |
| BsiSI | CCGG | 2 cut(s) | 44, 125 |
| BslFI | GGGAC | 1 cut(s) | 230 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 125 |
| BsmAI | GTCTC | 3 cut(s) | 120, 215, 561 |
| BsmFI | GGGAC | 1 cut(s) | 230 |
| BsnI | GGCC | 1 cut(s) | 86 |
| Bso31I | GGTCTC | 1 cut(s) | 215 |
| Bsp120I | GGGCCC | 1 cut(s) | 84 |
| Bsp1286I | GDGCHC | 1 cut(s) | 88 |
| Bsp143I | GATC | 3 cut(s) | 132, 163, 373 |
| BspACI | CCGC | 3 cut(s) | 82, 119, 186 |
| BspANI | GGCC | 1 cut(s) | 86 |
| BspCNI | CTCAG | 1 cut(s) | 256 |
| BspFNI | CGCG | 1 cut(s) | 82 |
| BspLI | GGNNCC | 2 cut(s) | 86, 87 |
| BspMAI | CTGCAG | 1 cut(s) | 40 |
| BspPI | GGATC | 2 cut(s) | 140, 158 |
| BspTNI | GGTCTC | 1 cut(s) | 215 |
| BsrDI | GCAATG | 1 cut(s) | 306 |
| BssECI | CCNNGG | 4 cut(s) | 42, 217, 383, 401 |
| BssMI | GATC | 3 cut(s) | 132, 163, 373 |
| BssT1I | CCWWGG | 2 cut(s) | 383, 401 |
| Bst2UI | CCWGG | 1 cut(s) | 218 |
| Bst4CI | ACNGT | 1 cut(s) | 413 |
| Bst6I | CTCTTC | 1 cut(s) | 218 |
| BstC8I | GCNNGC | 3 cut(s) | 84, 178, 493 |
| BstDEI | CTNAG | 4 cut(s) | 74, 264, 553, 600 |
| BstF5I | GGATG | 3 cut(s) | 154, 411, 542 |
| BstFNI | CGCG | 1 cut(s) | 82 |
| BstHHI | GCGC | 1 cut(s) | 82 |
| BstKTI | GATC | 3 cut(s) | 135, 166, 376 |
| BstMAI | GTCTC | 3 cut(s) | 120, 215, 561 |
| BstMBI | GATC | 3 cut(s) | 132, 163, 373 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 260 |
| BstNI | CCWGG | 1 cut(s) | 218 |
| BstSCI | CCNGG | 3 cut(s) | 42, 124, 216 |
| BstSFI | CTRYAG | 1 cut(s) | 36 |
| BstSLI | GKGCMC | 1 cut(s) | 88 |
| BstUI | CGCG | 1 cut(s) | 82 |
| BstV1I | GCAGC | 2 cut(s) | 50, 226 |
| BstX2I | RGATCY | 1 cut(s) | 163 |
| BstYI | RGATCY | 1 cut(s) | 163 |
| BsuI | GTATCC | 1 cut(s) | 407 |
| BsuRI | GGCC | 1 cut(s) | 86 |
| BtsCI | GGATG | 3 cut(s) | 154, 411, 542 |
| Cac8I | GCNNGC | 3 cut(s) | 84, 178, 493 |
| CaiI | CAGNNNCTG | 1 cut(s) | 167 |
| CfoI | GCGC | 1 cut(s) | 82 |
| Cfr13I | GGNCC | 2 cut(s) | 84, 85 |
| Csp6I | GTAC | 1 cut(s) | 33 |
| CviAII | CATG | 1 cut(s) | 320 |
| CviJI | RGCY | 6 cut(s) | 41, 86, 176, 180, 429, 575 |
| CviKI_1 | RGCY | 6 cut(s) | 41, 86, 176, 180, 429, 575 |
| CviQI | GTAC | 1 cut(s) | 33 |
| DdeI | CTNAG | 4 cut(s) | 74, 264, 553, 600 |
| DpnI | GATC | 3 cut(s) | 134, 165, 375 |
| DpnII | GATC | 3 cut(s) | 132, 163, 373 |
| Eam1104I | CTCTTC | 1 cut(s) | 218 |
| EarI | CTCTTC | 1 cut(s) | 218 |
| EciI | GGCGGA | 2 cut(s) | 108, 201 |
| Eco130I | CCWWGG | 2 cut(s) | 383, 401 |
| Eco24I | GRGCYC | 1 cut(s) | 88 |
| Eco31I | GGTCTC | 1 cut(s) | 215 |
| Eco32I | GATATC | 1 cut(s) | 447 |
| EcoO109I | RGGNCCY | 1 cut(s) | 85 |
| EcoRII | CCWGG | 1 cut(s) | 216 |
| EcoRV | GATATC | 1 cut(s) | 447 |
| EcoT14I | CCWWGG | 2 cut(s) | 383, 401 |
| EcoT22I | ATGCAT | 1 cut(s) | 475 |
| EcoT38I | GRGCYC | 1 cut(s) | 88 |
| ErhI | CCWWGG | 2 cut(s) | 383, 401 |
| FaeI | CATG | 1 cut(s) | 323 |
| FaiI | YATR | 8 cut(s) | 234, 321, 418, 453, 455, 498, 512, 561 |
| FaqI | GGGAC | 1 cut(s) | 230 |
| FatI | CATG | 1 cut(s) | 319 |
| FauI | CCCGC | 1 cut(s) | 75 |
| Fnu4HI | GCNGC | 2 cut(s) | 39, 240 |
| FokI | GGATG | 3 cut(s) | 161, 418, 529 |
| FriOI | GRGCYC | 1 cut(s) | 88 |
| Fsp4HI | GCNGC | 2 cut(s) | 39, 240 |
| FspBI | CTAG | 4 cut(s) | 171, 272, 564, 579 |
| GlaI | GCGC | 1 cut(s) | 81 |
| GluI | GCNGC | 2 cut(s) | 39, 240 |
| GsaI | CCCAGC | 1 cut(s) | 62 |
| HaeIII | GGCC | 1 cut(s) | 86 |
| HapII | CCGG | 2 cut(s) | 44, 125 |
| HhaI | GCGC | 1 cut(s) | 82 |
| Hin1II | CATG | 1 cut(s) | 323 |
| Hin6I | GCGC | 1 cut(s) | 80 |
| HinP1I | GCGC | 1 cut(s) | 80 |
| HinfI | GANTC | 5 cut(s) | 113, 200, 316, 338, 379 |
| HpaII | CCGG | 2 cut(s) | 44, 125 |
| Hpy166II | GTNNAC | 1 cut(s) | 96 |
| Hpy188I | TCNGA | 5 cut(s) | 163, 205, 378, 444, 461 |
| Hpy188III | TCNNGA | 1 cut(s) | 579 |
| Hpy8I | GTNNAC | 1 cut(s) | 96 |
| HpyAV | CCTTC | 1 cut(s) | 458 |
| HpyCH4III | ACNGT | 1 cut(s) | 413 |
| HpyCH4IV | ACGT | 1 cut(s) | 310 |
| HpyCH4V | TGCA | 2 cut(s) | 38, 473 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 260 |
| HpyF3I | CTNAG | 4 cut(s) | 74, 264, 553, 600 |
| HpySE526I | ACGT | 1 cut(s) | 310 |
| Hsp92II | CATG | 1 cut(s) | 323 |
| HspAI | GCGC | 1 cut(s) | 80 |
| Kzo9I | GATC | 3 cut(s) | 132, 163, 373 |
| LmnI | GCTCC | 1 cut(s) | 19 |
| LpnPI | CCDG | 9 cut(s) | 44, 57, 114, 138, 162, 180, 203, 230, 384 |
| Lsp1109I | GCAGC | 2 cut(s) | 50, 226 |
| LweI | GCATC | 1 cut(s) | 250 |
| MaeI | CTAG | 4 cut(s) | 171, 272, 564, 579 |
| MaeII | ACGT | 1 cut(s) | 310 |
| MaeIII | GTNAC | 2 cut(s) | 356, 583 |
| MalI | GATC | 3 cut(s) | 134, 165, 375 |
| MboI | GATC | 3 cut(s) | 132, 163, 373 |
| MboII | GAAGA | 1 cut(s) | 205 |
| MflI | RGATCY | 1 cut(s) | 163 |
| MhlI | GDGCHC | 1 cut(s) | 88 |
| MluCI | AATT | 3 cut(s) | 225, 485, 533 |
| MlyI | GAGTC | 2 cut(s) | 122, 310 |
| MmeI | TCCRAC | 3 cut(s) | 110, 293, 309 |
| MnlI | CCTC | 5 cut(s) | 132, 215, 259, 286, 522 |
| Mph1103I | ATGCAT | 1 cut(s) | 475 |
| MspI | CCGG | 2 cut(s) | 44, 125 |
| MspR9I | CCNGG | 3 cut(s) | 44, 126, 218 |
| MvaI | CCWGG | 1 cut(s) | 218 |
| MvnI | CGCG | 1 cut(s) | 82 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 260 |
| NciI | CCSGG | 2 cut(s) | 44, 126 |
| NdeII | GATC | 3 cut(s) | 132, 163, 373 |
| NlaIII | CATG | 1 cut(s) | 323 |
| NlaIV | GGNNCC | 2 cut(s) | 86, 87 |
| NsiI | ATGCAT | 1 cut(s) | 475 |
| PfeI | GAWTC | 3 cut(s) | 200, 338, 379 |
| PkrI | GCNGC | 2 cut(s) | 40, 241 |
| PleI | GAGTC | 2 cut(s) | 121, 310 |
| PpsI | GAGTC | 2 cut(s) | 121, 310 |
| PsiI | TTATAA | 1 cut(s) | 234 |
| Psp6I | CCWGG | 1 cut(s) | 216 |
| PspFI | CCCAGC | 1 cut(s) | 58 |
| PspGI | CCWGG | 1 cut(s) | 216 |
| PspN4I | GGNNCC | 2 cut(s) | 86, 87 |
| PspOMI | GGGCCC | 1 cut(s) | 84 |
| PspPI | GGNCC | 2 cut(s) | 84, 85 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 401, 433 |
| PstI | CTGCAG | 1 cut(s) | 40 |
| PstNI | CAGNNNCTG | 1 cut(s) | 167 |
| PsuI | RGATCY | 1 cut(s) | 163 |
| RsaI | GTAC | 1 cut(s) | 34 |
| RsaNI | GTAC | 1 cut(s) | 33 |
| SatI | GCNGC | 2 cut(s) | 39, 240 |
| Sau3AI | GATC | 3 cut(s) | 132, 163, 373 |
| Sau96I | GGNCC | 2 cut(s) | 84, 85 |
| SchI | GAGTC | 2 cut(s) | 122, 310 |
| ScrFI | CCNGG | 3 cut(s) | 44, 126, 218 |
| SduI | GDGCHC | 1 cut(s) | 88 |
| SetI | ASST | 7 cut(s) | 12, 178, 270, 297, 313, 373, 440 |
| SfaNI | GCATC | 1 cut(s) | 250 |
| SfcI | CTRYAG | 1 cut(s) | 36 |
| Sse9I | AATT | 3 cut(s) | 225, 485, 533 |
| SsiI | CCGC | 3 cut(s) | 82, 119, 186 |
| SspMI | CTAG | 4 cut(s) | 171, 272, 564, 579 |
| StyD4I | CCNGG | 3 cut(s) | 42, 124, 216 |
| StyI | CCWWGG | 2 cut(s) | 383, 401 |
| TaaI | ACNGT | 1 cut(s) | 413 |
| TaiI | ACGT | 1 cut(s) | 313 |
| TasI | AATT | 3 cut(s) | 225, 485, 533 |
| TfiI | GAWTC | 3 cut(s) | 200, 338, 379 |
| TseI | GCWGC | 2 cut(s) | 38, 239 |
| TspDTI | ATGAA | 1 cut(s) | 422 |
| TspGWI | ACGGA | 1 cut(s) | 161 |
| XapI | RAATTY | 3 cut(s) | 225, 485, 533 |
| XbaI | TCTAGA | 1 cut(s) | 578 |
| XspI | CTAG | 4 cut(s) | 171, 272, 564, 579 |
| Zsp2I | ATGCAT | 1 cut(s) | 475 |