ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF4283 | PF14111 | 13 - 60 | 1.4e-06 | Domain of unknown function (DUF4283) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 910 |
| Acc36I | ACCTGC | 1 cut(s) | 910 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 57 |
| AciI | CCGC | 5 cut(s) | 156, 186, 270, 401, 590 |
| AclWI | GGATC | 6 cut(s) | 108, 118, 131, 270, 460, 722 |
| AcoI | YGGCCR | 1 cut(s) | 48 |
| AcsI | RAATTY | 3 cut(s) | 53, 294, 354 |
| AcvI | CACGTG | 1 cut(s) | 240 |
| AcyI | GRCGYC | 1 cut(s) | 425 |
| AdeI | CACNNNGTG | 1 cut(s) | 109 |
| AfaI | GTAC | 3 cut(s) | 277, 288, 504 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 57, 206, 385, 565, 566, 815, 945 |
| AflIII | ACRYGT | 1 cut(s) | 505 |
| AgeI | ACCGGT | 1 cut(s) | 72 |
| AgsI | TTSAA | 2 cut(s) | 254, 299 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 662, 694 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 180, 212, 919, 951 |
| AluBI | AGCT | 2 cut(s) | 395, 488 |
| AluI | AGCT | 2 cut(s) | 395, 488 |
| Alw21I | GWGCWC | 1 cut(s) | 997 |
| Alw26I | GTCTC | 2 cut(s) | 369, 416 |
| AlwI | GGATC | 6 cut(s) | 108, 118, 131, 270, 460, 722 |
| AoxI | GGCC | 4 cut(s) | 48, 61, 639, 700 |
| ApeKI | GCWGC | 1 cut(s) | 392 |
| ApoI | RAATTY | 3 cut(s) | 53, 294, 354 |
| AsiGI | ACCGGT | 1 cut(s) | 72 |
| AspS9I | GGNCC | 5 cut(s) | 61, 158, 410, 640, 701 |
| AsuC2I | CCSGG | 4 cut(s) | 39, 128, 312, 560 |
| AsuHPI | GGTGA | 2 cut(s) | 91, 221 |
| AvaII | GGWCC | 2 cut(s) | 158, 410 |
| AxyI | CCTNAGG | 1 cut(s) | 858 |
| BalI | TGGCCA | 1 cut(s) | 50 |
| BamHI | GGATCC | 1 cut(s) | 123 |
| BbrPI | CACGTG | 1 cut(s) | 240 |
| BbsI | GAAGAC | 1 cut(s) | 423 |
| Bbv12I | GWGCWC | 1 cut(s) | 997 |
| BbvI | GCAGC | 1 cut(s) | 404 |
| BccI | CCATC | 6 cut(s) | 40, 89, 472, 680, 808, 913 |
| BceAI | ACGGC | 5 cut(s) | 102, 169, 199, 250, 412 |
| BcnI | CCSGG | 4 cut(s) | 39, 128, 312, 560 |
| BcoDI | GTCTC | 2 cut(s) | 369, 416 |
| BfaI | CTAG | 3 cut(s) | 266, 513, 657 |
| BfuAI | ACCTGC | 1 cut(s) | 910 |
| BisI | GCNGC | 2 cut(s) | 393, 591 |
| BlsI | GCNGC | 2 cut(s) | 394, 592 |
| Bme1390I | CCNGG | 4 cut(s) | 39, 128, 312, 560 |
| Bme18I | GGWCC | 2 cut(s) | 158, 410 |
| BmgT120I | GGNCC | 5 cut(s) | 61, 158, 410, 640, 701 |
| BmiI | GGNNCC | 6 cut(s) | 62, 125, 600, 822, 864, 937 |
| BmrFI | CCNGG | 4 cut(s) | 39, 128, 312, 560 |
| BmrI | ACTGGG | 2 cut(s) | 26, 637 |
| BmsI | GCATC | 5 cut(s) | 336, 564, 853, 901, 995 |
| BmuI | ACTGGG | 2 cut(s) | 26, 637 |
| BpiI | GAAGAC | 1 cut(s) | 423 |
| BpuMI | CCSGG | 4 cut(s) | 39, 128, 312, 560 |
| BsaAI | YACGTR | 2 cut(s) | 240, 506 |
| BsaBI | GATNNNNATC | 2 cut(s) | 99, 726 |
| BsaHI | GRCGYC | 1 cut(s) | 425 |
| BsaI | GGTCTC | 1 cut(s) | 369 |
| BsaJI | CCNNGG | 2 cut(s) | 161, 200 |
| BsaWI | WCCGGW | 2 cut(s) | 72, 114 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 180, 210, 413, 443 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 57, 206, 385, 565, 566, 815, 945 |
| Bse118I | RCCGGY | 2 cut(s) | 72, 385 |
| Bse1I | ACTGG | 3 cut(s) | 21, 379, 643 |
| Bse21I | CCTNAGG | 1 cut(s) | 858 |
| Bse3DI | GCAATG | 1 cut(s) | 454 |
| Bse8I | GATNNNNATC | 2 cut(s) | 99, 726 |
| BseDI | CCNNGG | 2 cut(s) | 161, 200 |
| BseGI | GGATG | 3 cut(s) | 351, 555, 844 |
| BseJI | GATNNNNATC | 2 cut(s) | 99, 726 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 57, 206, 385, 565, 566, 815, 945 |
| BseMI | GCAATG | 1 cut(s) | 454 |
| BseMII | CTCAG | 4 cut(s) | 554, 639, 698, 849 |
| BseNI | ACTGG | 3 cut(s) | 21, 379, 643 |
| BseRI | GAGGAG | 1 cut(s) | 146 |
| BseXI | GCAGC | 1 cut(s) | 404 |
| BseYI | CCCAGC | 1 cut(s) | 258 |
| BsgI | GTGCAG | 1 cut(s) | 938 |
| BshFI | GGCC | 4 cut(s) | 50, 63, 641, 702 |
| BshTI | ACCGGT | 1 cut(s) | 72 |
| BsiHKAI | GWGCWC | 1 cut(s) | 997 |
| BsiSI | CCGG | 7 cut(s) | 38, 73, 115, 127, 311, 386, 560 |
| BslFI | GGGAC | 1 cut(s) | 940 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 57, 206, 385, 565, 566, 815, 945 |
| BsmAI | GTCTC | 2 cut(s) | 369, 416 |
| BsmBI | CGTCTC | 1 cut(s) | 416 |
| BsmFI | GGGAC | 1 cut(s) | 940 |
| BsnI | GGCC | 4 cut(s) | 50, 63, 641, 702 |
| Bso31I | GGTCTC | 1 cut(s) | 369 |
| Bsp1286I | GDGCHC | 1 cut(s) | 997 |
| Bsp143I | GATC | 6 cut(s) | 100, 123, 262, 280, 452, 727 |
| Bsp19I | CCATGG | 1 cut(s) | 161 |
| BspACI | CCGC | 5 cut(s) | 156, 186, 270, 401, 590 |
| BspANI | GGCC | 4 cut(s) | 50, 63, 641, 702 |
| BspCNI | CTCAG | 4 cut(s) | 553, 640, 699, 850 |
| BspHI | TCATGA | 1 cut(s) | 91 |
| BspLI | GGNNCC | 6 cut(s) | 62, 125, 600, 822, 864, 937 |
| BspMI | ACCTGC | 1 cut(s) | 910 |
| BspPI | GGATC | 6 cut(s) | 108, 118, 131, 270, 460, 722 |
| BspTNI | GGTCTC | 1 cut(s) | 369 |
| BsrDI | GCAATG | 1 cut(s) | 454 |
| BsrFI | RCCGGY | 2 cut(s) | 72, 385 |
| BsrI | ACTGG | 3 cut(s) | 21, 379, 643 |
| BssAI | RCCGGY | 2 cut(s) | 72, 385 |
| BssECI | CCNNGG | 2 cut(s) | 161, 200 |
| BssMI | GATC | 6 cut(s) | 100, 123, 262, 280, 452, 727 |
| BssNI | GRCGYC | 1 cut(s) | 425 |
| BssT1I | CCWWGG | 1 cut(s) | 161 |
| Bst4CI | ACNGT | 1 cut(s) | 229 |
| Bst6I | CTCTTC | 1 cut(s) | 23 |
| BstACI | GRCGYC | 1 cut(s) | 425 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 992 |
| BstBAI | YACGTR | 2 cut(s) | 240, 506 |
| BstC8I | GCNNGC | 1 cut(s) | 65 |
| BstDEI | CTNAG | 5 cut(s) | 540, 648, 707, 849, 858 |
| BstDSI | CCRYGG | 1 cut(s) | 161 |
| BstF5I | GGATG | 3 cut(s) | 351, 555, 844 |
| BstKTI | GATC | 6 cut(s) | 103, 126, 265, 283, 455, 730 |
| BstMAI | GTCTC | 2 cut(s) | 369, 416 |
| BstMBI | GATC | 6 cut(s) | 100, 123, 262, 280, 452, 727 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 398, 689, 992 |
| BstSCI | CCNGG | 4 cut(s) | 37, 126, 310, 558 |
| BstV1I | GCAGC | 1 cut(s) | 404 |
| BstV2I | GAAGAC | 1 cut(s) | 423 |
| BstX2I | RGATCY | 2 cut(s) | 123, 262 |
| BstYI | RGATCY | 2 cut(s) | 123, 262 |
| Bsu36I | CCTNAGG | 1 cut(s) | 858 |
| BsuRI | GGCC | 4 cut(s) | 50, 63, 641, 702 |
| BtgI | CCRYGG | 1 cut(s) | 161 |
| BtgZI | GCGATG | 1 cut(s) | 593 |
| BtsCI | GGATG | 3 cut(s) | 351, 555, 844 |
| BtsI | GCAGTG | 1 cut(s) | 921 |
| BtsIMutI | CAGTG | 2 cut(s) | 704, 921 |
| BveI | ACCTGC | 1 cut(s) | 910 |
| Cac8I | GCNNGC | 1 cut(s) | 65 |
| CciI | TCATGA | 1 cut(s) | 91 |
| Cfr10I | RCCGGY | 2 cut(s) | 72, 385 |
| Cfr13I | GGNCC | 5 cut(s) | 61, 158, 410, 640, 701 |
| CseI | GACGC | 1 cut(s) | 433 |
| Csp6I | GTAC | 3 cut(s) | 276, 287, 503 |
| CspAI | ACCGGT | 1 cut(s) | 72 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 754, 789, 855, 890 |
| CviAII | CATG | 4 cut(s) | 92, 162, 443, 894 |
| CviQI | GTAC | 3 cut(s) | 276, 287, 503 |
| DdeI | CTNAG | 5 cut(s) | 540, 648, 707, 849, 858 |
| DpnI | GATC | 6 cut(s) | 102, 125, 264, 282, 454, 729 |
| DpnII | GATC | 6 cut(s) | 100, 123, 262, 280, 452, 727 |
| DraI | TTTAAA | 1 cut(s) | 369 |
| DraIII | CACNNNGTG | 1 cut(s) | 109 |
| EaeI | YGGCCR | 1 cut(s) | 48 |
| Eam1104I | CTCTTC | 1 cut(s) | 23 |
| EarI | CTCTTC | 1 cut(s) | 23 |
| EciI | GGCGGA | 3 cut(s) | 171, 201, 285 |
| Eco130I | CCWWGG | 1 cut(s) | 161 |
| Eco31I | GGTCTC | 1 cut(s) | 369 |
| Eco47I | GGWCC | 2 cut(s) | 158, 410 |
| Eco72I | CACGTG | 1 cut(s) | 240 |
| Eco81I | CCTNAGG | 1 cut(s) | 858 |
| EcoO109I | RGGNCCY | 1 cut(s) | 61 |
| EcoT14I | CCWWGG | 1 cut(s) | 161 |
| ErhI | CCWWGG | 1 cut(s) | 161 |
| Esp3I | CGTCTC | 1 cut(s) | 416 |
| FaeI | CATG | 4 cut(s) | 95, 165, 446, 897 |
| FaiI | YATR | 8 cut(s) | 93, 163, 337, 444, 800, 895, 999, 1001 |
| FaqI | GGGAC | 1 cut(s) | 940 |
| FatI | CATG | 4 cut(s) | 91, 161, 442, 893 |
| FauNDI | CATATG | 1 cut(s) | 999 |
| Fnu4HI | GCNGC | 2 cut(s) | 393, 591 |
| FokI | GGATG | 3 cut(s) | 358, 542, 831 |
| Fsp4HI | GCNGC | 2 cut(s) | 393, 591 |
| FspBI | CTAG | 3 cut(s) | 266, 513, 657 |
| GluI | GCNGC | 2 cut(s) | 393, 591 |
| GsaI | CCCAGC | 1 cut(s) | 262 |
| HaeIII | GGCC | 4 cut(s) | 50, 63, 641, 702 |
| HapII | CCGG | 7 cut(s) | 38, 73, 115, 127, 311, 386, 560 |
| HgaI | GACGC | 1 cut(s) | 433 |
| Hin1I | GRCGYC | 1 cut(s) | 425 |
| Hin1II | CATG | 4 cut(s) | 95, 165, 446, 897 |
| HinfI | GANTC | 3 cut(s) | 31, 583, 716 |
| HpaII | CCGG | 7 cut(s) | 38, 73, 115, 127, 311, 386, 560 |
| HphI | GGTGA | 2 cut(s) | 91, 221 |
| Hpy166II | GTNNAC | 2 cut(s) | 232, 247 |
| Hpy188I | TCNGA | 8 cut(s) | 201, 414, 543, 603, 649, 721, 886, 910 |
| Hpy188III | TCNNGA | 2 cut(s) | 92, 635 |
| Hpy8I | GTNNAC | 2 cut(s) | 232, 247 |
| Hpy99I | CGWCG | 2 cut(s) | 26, 223 |
| HpyAV | CCTTC | 3 cut(s) | 336, 463, 938 |
| HpyCH4III | ACNGT | 1 cut(s) | 229 |
| HpyCH4IV | ACGT | 4 cut(s) | 239, 274, 505, 772 |
| HpyCH4V | TGCA | 5 cut(s) | 67, 339, 442, 914, 919 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 398, 689, 992 |
| HpyF3I | CTNAG | 5 cut(s) | 540, 648, 707, 849, 858 |
| HpySE526I | ACGT | 4 cut(s) | 239, 274, 505, 772 |
| Hsp92I | GRCGYC | 1 cut(s) | 425 |
| Hsp92II | CATG | 4 cut(s) | 95, 165, 446, 897 |
| Kzo9I | GATC | 6 cut(s) | 100, 123, 262, 280, 452, 727 |
| LmnI | GCTCC | 4 cut(s) | 173, 188, 868, 958 |
| Lsp1109I | GCAGC | 1 cut(s) | 404 |
| LweI | GCATC | 5 cut(s) | 336, 564, 853, 901, 995 |
| MaeI | CTAG | 3 cut(s) | 266, 513, 657 |
| MaeII | ACGT | 4 cut(s) | 239, 274, 505, 772 |
| MaeIII | GTNAC | 1 cut(s) | 361 |
| MalI | GATC | 6 cut(s) | 102, 125, 264, 282, 454, 729 |
| MboI | GATC | 6 cut(s) | 100, 123, 262, 280, 452, 727 |
| MboII | GAAGA | 7 cut(s) | 40, 317, 423, 487, 679, 847, 891 |
| MflI | RGATCY | 2 cut(s) | 123, 262 |
| MhlI | GDGCHC | 1 cut(s) | 997 |
| MlsI | TGGCCA | 1 cut(s) | 50 |
| MluCI | AATT | 4 cut(s) | 53, 294, 354, 696 |
| MluNI | TGGCCA | 1 cut(s) | 50 |
| MlyI | GAGTC | 2 cut(s) | 40, 725 |
| MmeI | TCCRAC | 2 cut(s) | 699, 864 |
| MnlI | CCTC | 7 cut(s) | 3, 124, 195, 563, 621, 631, 853 |
| Mox20I | TGGCCA | 1 cut(s) | 50 |
| MscI | TGGCCA | 1 cut(s) | 50 |
| MseI | TTAA | 1 cut(s) | 368 |
| MslI | CAYNNNNRTG | 1 cut(s) | 447 |
| Msp20I | TGGCCA | 1 cut(s) | 50 |
| MspI | CCGG | 7 cut(s) | 38, 73, 115, 127, 311, 386, 560 |
| MspR9I | CCNGG | 4 cut(s) | 39, 128, 312, 560 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 398, 689, 992 |
| NciI | CCSGG | 4 cut(s) | 39, 128, 312, 560 |
| NcoI | CCATGG | 1 cut(s) | 161 |
| NdeI | CATATG | 1 cut(s) | 999 |
| NdeII | GATC | 6 cut(s) | 100, 123, 262, 280, 452, 727 |
| NlaIII | CATG | 4 cut(s) | 95, 165, 446, 897 |
| NlaIV | GGNNCC | 6 cut(s) | 62, 125, 600, 822, 864, 937 |
| NmuCI | GTSAC | 1 cut(s) | 361 |
| PagI | TCATGA | 1 cut(s) | 91 |
| PaqCI | CACCTGC | 1 cut(s) | 910 |
| PfeI | GAWTC | 1 cut(s) | 583 |
| PflFI | GACNNNGTC | 1 cut(s) | 427 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 57 |
| PfoI | TCCNGGA | 1 cut(s) | 126 |
| PinAI | ACCGGT | 1 cut(s) | 72 |
| PkrI | GCNGC | 2 cut(s) | 394, 592 |
| PleI | GAGTC | 2 cut(s) | 39, 724 |
| PmaCI | CACGTG | 1 cut(s) | 240 |
| PmlI | CACGTG | 1 cut(s) | 240 |
| PpsI | GAGTC | 2 cut(s) | 39, 724 |
| Ppu21I | YACGTR | 2 cut(s) | 240, 506 |
| PspCI | CACGTG | 1 cut(s) | 240 |
| PspFI | CCCAGC | 1 cut(s) | 258 |
| PspN4I | GGNNCC | 6 cut(s) | 62, 125, 600, 822, 864, 937 |
| PspPI | GGNCC | 5 cut(s) | 61, 158, 410, 640, 701 |
| PsuI | RGATCY | 2 cut(s) | 123, 262 |
| PsyI | GACNNNGTC | 1 cut(s) | 427 |
| RsaI | GTAC | 3 cut(s) | 277, 288, 504 |
| RsaNI | GTAC | 3 cut(s) | 276, 287, 503 |
| RseI | CAYNNNNRTG | 1 cut(s) | 447 |
| SaqAI | TTAA | 1 cut(s) | 368 |
| SatI | GCNGC | 2 cut(s) | 393, 591 |
| Sau3AI | GATC | 6 cut(s) | 100, 123, 262, 280, 452, 727 |
| Sau96I | GGNCC | 5 cut(s) | 61, 158, 410, 640, 701 |
| SchI | GAGTC | 2 cut(s) | 40, 725 |
| ScrFI | CCNGG | 4 cut(s) | 39, 128, 312, 560 |
| SduI | GDGCHC | 1 cut(s) | 997 |
| SfaNI | GCATC | 5 cut(s) | 336, 564, 853, 901, 995 |
| SgrAI | CRCCGGYG | 1 cut(s) | 385 |
| SinI | GGWCC | 2 cut(s) | 158, 410 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 447 |
| Sse9I | AATT | 4 cut(s) | 53, 294, 354, 696 |
| SsiI | CCGC | 5 cut(s) | 156, 186, 270, 401, 590 |
| SspMI | CTAG | 3 cut(s) | 266, 513, 657 |
| StyD4I | CCNGG | 4 cut(s) | 37, 126, 310, 558 |
| StyI | CCWWGG | 1 cut(s) | 161 |
| TaaI | ACNGT | 1 cut(s) | 229 |
| TaiI | ACGT | 4 cut(s) | 242, 277, 508, 775 |
| TaqI | TCGA | 2 cut(s) | 8, 461 |
| TasI | AATT | 4 cut(s) | 53, 294, 354, 696 |
| TauI | GCSGC | 1 cut(s) | 593 |
| TfiI | GAWTC | 1 cut(s) | 583 |
| Tru1I | TTAA | 1 cut(s) | 368 |
| Tru9I | TTAA | 1 cut(s) | 368 |
| TscAI | CASTG | 2 cut(s) | 711, 921 |
| TseFI | GTSAC | 1 cut(s) | 361 |
| TseI | GCWGC | 1 cut(s) | 392 |
| Tsp45I | GTSAC | 1 cut(s) | 361 |
| TspDTI | ATGAA | 1 cut(s) | 882 |
| TspRI | CASTG | 2 cut(s) | 711, 921 |
| Tth111I | GACNNNGTC | 1 cut(s) | 427 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 57 |
| VpaK11BI | GGWCC | 2 cut(s) | 158, 410 |
| XapI | RAATTY | 3 cut(s) | 53, 294, 354 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 811, 837 |
| XspI | CTAG | 3 cut(s) | 266, 513, 657 |