ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-RVT | PF13966 | 123 - 203 | 3.4e-17 | zinc-binding in reverse transcriptase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 65 |
| AccII | CGCG | 1 cut(s) | 592 |
| AciI | CCGC | 5 cut(s) | 63, 106, 508, 590, 878 |
| AclWI | GGATC | 1 cut(s) | 165 |
| AcsI | RAATTY | 1 cut(s) | 7 |
| AcuI | CTGAAG | 1 cut(s) | 120 |
| AgsI | TTSAA | 6 cut(s) | 19, 293, 387, 440, 782, 835 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 78, 110 |
| AluBI | AGCT | 4 cut(s) | 41, 680, 715, 845 |
| AluI | AGCT | 4 cut(s) | 41, 680, 715, 845 |
| Alw21I | GWGCWC | 1 cut(s) | 306 |
| Alw44I | GTGCAC | 1 cut(s) | 302 |
| AlwI | GGATC | 1 cut(s) | 165 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 926 |
| AoxI | GGCC | 3 cut(s) | 103, 167, 619 |
| ApaLI | GTGCAC | 1 cut(s) | 302 |
| ApeKI | GCWGC | 1 cut(s) | 772 |
| ApoI | RAATTY | 1 cut(s) | 7 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 656, 688 |
| AspS9I | GGNCC | 1 cut(s) | 53 |
| AsuHPI | GGTGA | 2 cut(s) | 257, 506 |
| AvaII | GGWCC | 1 cut(s) | 53 |
| BaeGI | GKGCMC | 1 cut(s) | 306 |
| BauI | CACGAG | 1 cut(s) | 305 |
| Bbv12I | GWGCWC | 1 cut(s) | 306 |
| BbvI | GCAGC | 1 cut(s) | 759 |
| BccI | CCATC | 2 cut(s) | 200, 867 |
| BfaI | CTAG | 5 cut(s) | 254, 512, 581, 762, 902 |
| BisI | GCNGC | 4 cut(s) | 63, 106, 509, 773 |
| BlsI | GCNGC | 4 cut(s) | 64, 107, 510, 774 |
| Bme18I | GGWCC | 1 cut(s) | 53 |
| BmgT120I | GGNCC | 1 cut(s) | 53 |
| BmiI | GGNNCC | 1 cut(s) | 54 |
| BmrI | ACTGGG | 2 cut(s) | 337, 927 |
| BmsI | GCATC | 2 cut(s) | 487, 580 |
| BmuI | ACTGGG | 2 cut(s) | 337, 927 |
| BpuEI | CTTGAG | 2 cut(s) | 348, 680 |
| BsaBI | GATNNNNATC | 1 cut(s) | 570 |
| BsaJI | CCNNGG | 2 cut(s) | 297, 647 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 669, 699 |
| Bse1I | ACTGG | 3 cut(s) | 332, 496, 933 |
| Bse8I | GATNNNNATC | 1 cut(s) | 570 |
| BseDI | CCNNGG | 2 cut(s) | 297, 647 |
| BseGI | GGATG | 3 cut(s) | 211, 571, 859 |
| BseJI | GATNNNNATC | 1 cut(s) | 570 |
| BseNI | ACTGG | 3 cut(s) | 332, 496, 933 |
| BseSI | GKGCMC | 1 cut(s) | 306 |
| BseXI | GCAGC | 1 cut(s) | 759 |
| BseYI | CCCAGC | 2 cut(s) | 241, 810 |
| Bsh1236I | CGCG | 1 cut(s) | 592 |
| BshFI | GGCC | 3 cut(s) | 105, 169, 621 |
| BsiHKAI | GWGCWC | 1 cut(s) | 306 |
| BslFI | GGGAC | 2 cut(s) | 66, 440 |
| BsmFI | GGGAC | 2 cut(s) | 66, 440 |
| BsmI | GAATGC | 2 cut(s) | 658, 850 |
| BsnI | GGCC | 3 cut(s) | 105, 169, 621 |
| Bsp1286I | GDGCHC | 1 cut(s) | 306 |
| Bsp143I | GATC | 2 cut(s) | 157, 397 |
| BspACI | CCGC | 5 cut(s) | 63, 106, 508, 590, 878 |
| BspANI | GGCC | 3 cut(s) | 105, 169, 621 |
| BspFNI | CGCG | 1 cut(s) | 592 |
| BspLI | GGNNCC | 1 cut(s) | 54 |
| BspPI | GGATC | 1 cut(s) | 165 |
| BspQI | GCTCTTC | 1 cut(s) | 477 |
| BsrBI | CCGCTC | 1 cut(s) | 65 |
| BsrI | ACTGG | 3 cut(s) | 332, 496, 933 |
| BssECI | CCNNGG | 2 cut(s) | 297, 647 |
| BssMI | GATC | 2 cut(s) | 157, 397 |
| BssSI | CACGAG | 1 cut(s) | 305 |
| BssT1I | CCWWGG | 2 cut(s) | 297, 647 |
| Bst2BI | CACGAG | 1 cut(s) | 305 |
| Bst6I | CTCTTC | 2 cut(s) | 294, 477 |
| BstDEI | CTNAG | 1 cut(s) | 699 |
| BstF5I | GGATG | 3 cut(s) | 211, 571, 859 |
| BstFNI | CGCG | 1 cut(s) | 592 |
| BstKTI | GATC | 2 cut(s) | 160, 400 |
| BstMBI | GATC | 2 cut(s) | 157, 397 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 247 |
| BstNSI | RCATGY | 1 cut(s) | 878 |
| BstSLI | GKGCMC | 1 cut(s) | 306 |
| BstUI | CGCG | 1 cut(s) | 592 |
| BstV1I | GCAGC | 1 cut(s) | 759 |
| BsuRI | GGCC | 3 cut(s) | 105, 169, 621 |
| BtsCI | GGATG | 3 cut(s) | 211, 571, 859 |
| BtsI | GCAGTG | 1 cut(s) | 924 |
| BtsIMutI | CAGTG | 2 cut(s) | 325, 924 |
| CaiI | CAGNNNCTG | 1 cut(s) | 926 |
| Cfr13I | GGNCC | 1 cut(s) | 53 |
| CseI | GACGC | 1 cut(s) | 803 |
| CviAII | CATG | 4 cut(s) | 161, 476, 875, 945 |
| DdeI | CTNAG | 1 cut(s) | 699 |
| DpnI | GATC | 2 cut(s) | 159, 399 |
| DpnII | GATC | 2 cut(s) | 157, 397 |
| Eam1104I | CTCTTC | 2 cut(s) | 294, 477 |
| EarI | CTCTTC | 2 cut(s) | 294, 477 |
| Eco130I | CCWWGG | 2 cut(s) | 297, 647 |
| Eco47I | GGWCC | 1 cut(s) | 53 |
| Eco57I | CTGAAG | 1 cut(s) | 120 |
| EcoO109I | RGGNCCY | 1 cut(s) | 53 |
| EcoT14I | CCWWGG | 2 cut(s) | 297, 647 |
| EcoT22I | ATGCAT | 1 cut(s) | 852 |
| ErhI | CCWWGG | 2 cut(s) | 297, 647 |
| FaeI | CATG | 4 cut(s) | 164, 479, 878, 948 |
| FaqI | GGGAC | 2 cut(s) | 66, 440 |
| FatI | CATG | 4 cut(s) | 160, 475, 874, 944 |
| Fnu4HI | GCNGC | 4 cut(s) | 63, 106, 509, 773 |
| FokI | GGATG | 3 cut(s) | 218, 578, 846 |
| Fsp4HI | GCNGC | 4 cut(s) | 63, 106, 509, 773 |
| FspBI | CTAG | 5 cut(s) | 254, 512, 581, 762, 902 |
| GluI | GCNGC | 4 cut(s) | 63, 106, 509, 773 |
| GsaI | CCCAGC | 2 cut(s) | 245, 814 |
| HaeIII | GGCC | 3 cut(s) | 105, 169, 621 |
| HgaI | GACGC | 1 cut(s) | 803 |
| Hin1II | CATG | 4 cut(s) | 164, 479, 878, 948 |
| HinfI | GANTC | 4 cut(s) | 320, 560, 766, 839 |
| HphI | GGTGA | 2 cut(s) | 257, 506 |
| Hpy166II | GTNNAC | 1 cut(s) | 304 |
| Hpy188I | TCNGA | 4 cut(s) | 69, 139, 339, 565 |
| Hpy188III | TCNNGA | 3 cut(s) | 155, 365, 659 |
| Hpy8I | GTNNAC | 1 cut(s) | 304 |
| Hpy99I | CGWCG | 1 cut(s) | 405 |
| HpyAV | CCTTC | 6 cut(s) | 161, 460, 537, 632, 776, 865 |
| HpyCH4IV | ACGT | 2 cut(s) | 709, 882 |
| HpyCH4V | TGCA | 5 cut(s) | 116, 304, 571, 735, 850 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 247 |
| HpyF3I | CTNAG | 1 cut(s) | 699 |
| HpySE526I | ACGT | 2 cut(s) | 709, 882 |
| Hsp92II | CATG | 4 cut(s) | 164, 479, 878, 948 |
| Kzo9I | GATC | 2 cut(s) | 157, 397 |
| LguI | GCTCTTC | 1 cut(s) | 477 |
| LmnI | GCTCC | 2 cut(s) | 677, 934 |
| Lsp1109I | GCAGC | 1 cut(s) | 759 |
| LweI | GCATC | 2 cut(s) | 487, 580 |
| MaeI | CTAG | 5 cut(s) | 254, 512, 581, 762, 902 |
| MaeII | ACGT | 2 cut(s) | 709, 882 |
| MaeIII | GTNAC | 2 cut(s) | 551, 727 |
| MalI | GATC | 2 cut(s) | 159, 399 |
| MbiI | CCGCTC | 1 cut(s) | 65 |
| MboI | GATC | 2 cut(s) | 157, 397 |
| MboII | GAAGA | 5 cut(s) | 281, 464, 566, 569, 812 |
| MhlI | GDGCHC | 1 cut(s) | 306 |
| MluCI | AATT | 9 cut(s) | 7, 33, 181, 235, 406, 435, 741, 914, 952 |
| MlyI | GAGTC | 2 cut(s) | 569, 848 |
| MmeI | TCCRAC | 3 cut(s) | 362, 543, 783 |
| MnlI | CCTC | 5 cut(s) | 261, 297, 372, 533, 655 |
| Mph1103I | ATGCAT | 1 cut(s) | 852 |
| MseI | TTAA | 6 cut(s) | 99, 131, 180, 795, 951, 958 |
| MspA1I | CMGCKG | 1 cut(s) | 508 |
| Mva1269I | GAATGC | 2 cut(s) | 658, 850 |
| MvnI | CGCG | 1 cut(s) | 592 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 247 |
| NdeII | GATC | 2 cut(s) | 157, 397 |
| NlaIII | CATG | 4 cut(s) | 164, 479, 878, 948 |
| NlaIV | GGNNCC | 1 cut(s) | 54 |
| NmeAIII | GCCGAG | 1 cut(s) | 583 |
| NmuCI | GTSAC | 1 cut(s) | 551 |
| NsiI | ATGCAT | 1 cut(s) | 852 |
| NspI | RCATGY | 1 cut(s) | 878 |
| PciSI | GCTCTTC | 1 cut(s) | 477 |
| PctI | GAATGC | 2 cut(s) | 658, 850 |
| PfeI | GAWTC | 2 cut(s) | 320, 766 |
| PkrI | GCNGC | 4 cut(s) | 64, 107, 510, 774 |
| PleI | GAGTC | 2 cut(s) | 568, 847 |
| PpsI | GAGTC | 2 cut(s) | 568, 847 |
| PpuMI | RGGWCCY | 1 cut(s) | 53 |
| Psp5II | RGGWCCY | 1 cut(s) | 53 |
| PspFI | CCCAGC | 2 cut(s) | 241, 810 |
| PspN4I | GGNNCC | 1 cut(s) | 54 |
| PspPI | GGNCC | 1 cut(s) | 53 |
| PspPPI | RGGWCCY | 1 cut(s) | 53 |
| PstNI | CAGNNNCTG | 1 cut(s) | 926 |
| SapI | GCTCTTC | 1 cut(s) | 477 |
| SaqAI | TTAA | 6 cut(s) | 99, 131, 180, 795, 951, 958 |
| SatI | GCNGC | 4 cut(s) | 63, 106, 509, 773 |
| Sau3AI | GATC | 2 cut(s) | 157, 397 |
| Sau96I | GGNCC | 1 cut(s) | 53 |
| SchI | GAGTC | 2 cut(s) | 569, 848 |
| SduI | GDGCHC | 1 cut(s) | 306 |
| SfaNI | GCATC | 2 cut(s) | 487, 580 |
| SinI | GGWCC | 1 cut(s) | 53 |
| SmlI | CTYRAG | 2 cut(s) | 363, 659 |
| SmoI | CTYRAG | 2 cut(s) | 363, 659 |
| Sse9I | AATT | 9 cut(s) | 7, 33, 181, 235, 406, 435, 741, 914, 952 |
| SsiI | CCGC | 5 cut(s) | 63, 106, 508, 590, 878 |
| SspMI | CTAG | 5 cut(s) | 254, 512, 581, 762, 902 |
| StyI | CCWWGG | 2 cut(s) | 297, 647 |
| TaiI | ACGT | 2 cut(s) | 712, 885 |
| TaqI | TCGA | 1 cut(s) | 403 |
| TasI | AATT | 9 cut(s) | 7, 33, 181, 235, 406, 435, 741, 914, 952 |
| TauI | GCSGC | 3 cut(s) | 65, 108, 511 |
| TfiI | GAWTC | 2 cut(s) | 320, 766 |
| Tru1I | TTAA | 6 cut(s) | 99, 131, 180, 795, 951, 958 |
| Tru9I | TTAA | 6 cut(s) | 99, 131, 180, 795, 951, 958 |
| TscAI | CASTG | 2 cut(s) | 332, 931 |
| TseFI | GTSAC | 1 cut(s) | 551 |
| TseI | GCWGC | 1 cut(s) | 772 |
| Tsp45I | GTSAC | 1 cut(s) | 551 |
| TspDTI | ATGAA | 3 cut(s) | 345, 464, 928 |
| TspRI | CASTG | 2 cut(s) | 332, 931 |
| VneI | GTGCAC | 1 cut(s) | 302 |
| VpaK11BI | GGWCC | 1 cut(s) | 53 |
| XapI | RAATTY | 1 cut(s) | 7 |
| XceI | RCATGY | 1 cut(s) | 878 |
| XspI | CTAG | 5 cut(s) | 254, 512, 581, 762, 902 |
| Zsp2I | ATGCAT | 1 cut(s) | 852 |