ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Inositol_P | PF00459 | 66 - 328 | 1.1e-23 | Inositol monophosphatase family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 440 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 557 |
| AccBSI | CCGCTC | 1 cut(s) | 111 |
| AclWI | GGATC | 3 cut(s) | 542, 555, 954 |
| AcuI | CTGAAG | 1 cut(s) | 873 |
| AcyI | GRCGYC | 4 cut(s) | 242, 380, 441, 452 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 83, 283, 444, 557, 857, 1043, 1063 |
| AgsI | TTSAA | 3 cut(s) | 121, 847, 977 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 379 |
| AjnI | CCWGG | 2 cut(s) | 309, 693 |
| AluBI | AGCT | 4 cut(s) | 129, 331, 521, 788 |
| AluI | AGCT | 4 cut(s) | 129, 331, 521, 788 |
| Alw21I | GWGCWC | 1 cut(s) | 523 |
| Alw26I | GTCTC | 2 cut(s) | 331, 443 |
| AlwI | GGATC | 3 cut(s) | 542, 555, 954 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 316 |
| Ama87I | CYCGRG | 1 cut(s) | 263 |
| AoxI | GGCC | 1 cut(s) | 435 |
| ApeKI | GCWGC | 3 cut(s) | 126, 651, 1024 |
| AspLEI | GCGC | 3 cut(s) | 73, 251, 443 |
| AspS9I | GGNCC | 2 cut(s) | 226, 497 |
| AsuC2I | CCSGG | 1 cut(s) | 445 |
| AsuHPI | GGTGA | 6 cut(s) | 37, 85, 280, 397, 427, 836 |
| AvaI | CYCGRG | 1 cut(s) | 263 |
| AvaII | GGWCC | 2 cut(s) | 226, 497 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 664, 697 |
| BamHI | GGATCC | 1 cut(s) | 547 |
| BanI | GGYRCC | 1 cut(s) | 440 |
| BanII | GRGCYC | 1 cut(s) | 523 |
| Bbv12I | GWGCWC | 1 cut(s) | 523 |
| BbvI | GCAGC | 3 cut(s) | 138, 638, 1036 |
| BccI | CCATC | 5 cut(s) | 194, 551, 571, 721, 1057 |
| BceAI | ACGGC | 4 cut(s) | 176, 249, 439, 477 |
| BciT130I | CCWGG | 2 cut(s) | 311, 695 |
| BclI | TGATCA | 1 cut(s) | 318 |
| BcnI | CCSGG | 1 cut(s) | 445 |
| BcoDI | GTCTC | 2 cut(s) | 331, 443 |
| BfmI | CTRYAG | 1 cut(s) | 166 |
| BfoI | RGCGCY | 2 cut(s) | 252, 444 |
| BisI | GCNGC | 6 cut(s) | 109, 127, 147, 183, 652, 1025 |
| BlpI | GCTNAGC | 1 cut(s) | 522 |
| BlsI | GCNGC | 6 cut(s) | 110, 128, 148, 184, 653, 1026 |
| Bme1390I | CCNGG | 3 cut(s) | 311, 445, 695 |
| Bme18I | GGWCC | 2 cut(s) | 226, 497 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 379 |
| BmeT110I | CYCGRG | 1 cut(s) | 263 |
| BmgT120I | GGNCC | 2 cut(s) | 226, 497 |
| BmiI | GGNNCC | 3 cut(s) | 408, 442, 549 |
| BmrFI | CCNGG | 3 cut(s) | 311, 445, 695 |
| BoxI | GACNNNNGTC | 1 cut(s) | 284 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 359, 391 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 522 |
| BpuEI | CTTGAG | 1 cut(s) | 1043 |
| BpuMI | CCSGG | 1 cut(s) | 445 |
| BsaHI | GRCGYC | 4 cut(s) | 242, 380, 441, 452 |
| BsaJI | CCNNGG | 2 cut(s) | 444, 764 |
| BsaWI | WCCGGW | 3 cut(s) | 83, 283, 499 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 440, 458, 470, 488 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 83, 283, 444, 557, 857, 1043, 1063 |
| Bse118I | RCCGGY | 4 cut(s) | 251, 409, 437, 526 |
| Bse1I | ACTGG | 3 cut(s) | 549, 665, 1003 |
| Bse3DI | GCAATG | 1 cut(s) | 773 |
| BseBI | CCWGG | 2 cut(s) | 311, 695 |
| BseDI | CCNNGG | 2 cut(s) | 444, 764 |
| BseGI | GGATG | 1 cut(s) | 475 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 83, 283, 444, 557, 857, 1043, 1063 |
| BseMI | GCAATG | 1 cut(s) | 773 |
| BseMII | CTCAG | 1 cut(s) | 536 |
| BseNI | ACTGG | 3 cut(s) | 549, 665, 1003 |
| BseRI | GAGGAG | 3 cut(s) | 7, 383, 1059 |
| BseXI | GCAGC | 3 cut(s) | 138, 638, 1036 |
| BseYI | CCCAGC | 1 cut(s) | 331 |
| BshFI | GGCC | 1 cut(s) | 437 |
| BshNI | GGYRCC | 1 cut(s) | 440 |
| BsiHKAI | GWGCWC | 1 cut(s) | 523 |
| BsiHKCI | CYCGRG | 1 cut(s) | 263 |
| BsiSI | CCGG | 9 cut(s) | 84, 252, 284, 410, 438, 444, 500, 527, 1037 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 83, 283, 444, 557, 857, 1043, 1063 |
| BsmAI | GTCTC | 2 cut(s) | 331, 443 |
| BsmBI | CGTCTC | 2 cut(s) | 331, 443 |
| BsmI | GAATGC | 1 cut(s) | 708 |
| BsnI | GGCC | 1 cut(s) | 437 |
| BsoBI | CYCGRG | 1 cut(s) | 263 |
| Bsp1286I | GDGCHC | 1 cut(s) | 523 |
| Bsp143I | GATC | 4 cut(s) | 318, 547, 946, 1017 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 522 |
| Bsp19I | CCATGG | 1 cut(s) | 764 |
| BspANI | GGCC | 1 cut(s) | 437 |
| BspCNI | CTCAG | 1 cut(s) | 535 |
| BspLI | GGNNCC | 3 cut(s) | 408, 442, 549 |
| BspPI | GGATC | 3 cut(s) | 542, 555, 954 |
| BspQI | GCTCTTC | 1 cut(s) | 698 |
| BspT107I | GGYRCC | 1 cut(s) | 440 |
| BsrBI | CCGCTC | 1 cut(s) | 111 |
| BsrDI | GCAATG | 1 cut(s) | 773 |
| BsrFI | RCCGGY | 4 cut(s) | 251, 409, 437, 526 |
| BsrI | ACTGG | 3 cut(s) | 549, 665, 1003 |
| BssAI | RCCGGY | 4 cut(s) | 251, 409, 437, 526 |
| BssECI | CCNNGG | 2 cut(s) | 444, 764 |
| BssMI | GATC | 4 cut(s) | 318, 547, 946, 1017 |
| BssNI | GRCGYC | 4 cut(s) | 242, 380, 441, 452 |
| BssT1I | CCWWGG | 1 cut(s) | 764 |
| Bst2UI | CCWGG | 2 cut(s) | 311, 695 |
| Bst4CI | ACNGT | 3 cut(s) | 37, 292, 783 |
| Bst6I | CTCTTC | 2 cut(s) | 693, 698 |
| BstACI | GRCGYC | 4 cut(s) | 242, 380, 441, 452 |
| BstC8I | GCNNGC | 5 cut(s) | 253, 439, 528, 656, 739 |
| BstDEI | CTNAG | 1 cut(s) | 522 |
| BstDSI | CCRYGG | 1 cut(s) | 764 |
| BstEII | GGTNACC | 1 cut(s) | 286 |
| BstF5I | GGATG | 1 cut(s) | 475 |
| BstH2I | RGCGCY | 2 cut(s) | 252, 444 |
| BstHHI | GCGC | 3 cut(s) | 73, 251, 443 |
| BstKTI | GATC | 4 cut(s) | 321, 550, 949, 1020 |
| BstMAI | GTCTC | 2 cut(s) | 331, 443 |
| BstMBI | GATC | 4 cut(s) | 318, 547, 946, 1017 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 155, 188, 248, 527, 1033 |
| BstNI | CCWGG | 2 cut(s) | 311, 695 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 284 |
| BstPI | GGTNACC | 1 cut(s) | 286 |
| BstSCI | CCNGG | 3 cut(s) | 309, 443, 693 |
| BstSFI | CTRYAG | 1 cut(s) | 166 |
| BstV1I | GCAGC | 3 cut(s) | 138, 638, 1036 |
| BstX2I | RGATCY | 1 cut(s) | 547 |
| BstYI | RGATCY | 1 cut(s) | 547 |
| BsuRI | GGCC | 1 cut(s) | 437 |
| BtgI | CCRYGG | 1 cut(s) | 764 |
| BtgZI | GCGATG | 1 cut(s) | 172 |
| BtsCI | GGATG | 1 cut(s) | 475 |
| BtsIMutI | CAGTG | 2 cut(s) | 314, 658 |
| Cac8I | GCNNGC | 5 cut(s) | 253, 439, 528, 656, 739 |
| CaiI | CAGNNNCTG | 1 cut(s) | 316 |
| CfoI | GCGC | 3 cut(s) | 73, 251, 443 |
| Cfr10I | RCCGGY | 4 cut(s) | 251, 409, 437, 526 |
| Cfr13I | GGNCC | 2 cut(s) | 226, 497 |
| CpoI | CGGWCCG | 1 cut(s) | 497 |
| CseI | GACGC | 5 cut(s) | 208, 231, 295, 369, 460 |
| CspI | CGGWCCG | 1 cut(s) | 497 |
| CviAII | CATG | 2 cut(s) | 646, 765 |
| DdeI | CTNAG | 1 cut(s) | 522 |
| DinI | GGCGCC | 1 cut(s) | 442 |
| DpnI | GATC | 4 cut(s) | 320, 549, 948, 1019 |
| DpnII | GATC | 4 cut(s) | 318, 547, 946, 1017 |
| DriI | GACNNNNNGTC | 1 cut(s) | 379 |
| Eam1104I | CTCTTC | 2 cut(s) | 693, 698 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 379 |
| EarI | CTCTTC | 2 cut(s) | 693, 698 |
| EciI | GGCGGA | 4 cut(s) | 121, 380, 479, 510 |
| Ecl136II | GAGCTC | 1 cut(s) | 521 |
| Eco130I | CCWWGG | 1 cut(s) | 764 |
| Eco24I | GRGCYC | 1 cut(s) | 523 |
| Eco47I | GGWCC | 2 cut(s) | 226, 497 |
| Eco53kI | GAGCTC | 1 cut(s) | 521 |
| Eco57I | CTGAAG | 1 cut(s) | 873 |
| Eco88I | CYCGRG | 1 cut(s) | 263 |
| Eco91I | GGTNACC | 1 cut(s) | 286 |
| EcoICRI | GAGCTC | 1 cut(s) | 521 |
| EcoO65I | GGTNACC | 1 cut(s) | 286 |
| EcoRII | CCWGG | 2 cut(s) | 309, 693 |
| EcoT14I | CCWWGG | 1 cut(s) | 764 |
| EcoT38I | GRGCYC | 1 cut(s) | 523 |
| EgeI | GGCGCC | 1 cut(s) | 442 |
| EheI | GGCGCC | 1 cut(s) | 442 |
| ErhI | CCWWGG | 1 cut(s) | 764 |
| Esp3I | CGTCTC | 2 cut(s) | 331, 443 |
| FaeI | CATG | 2 cut(s) | 649, 768 |
| FaiI | YATR | 9 cut(s) | 647, 734, 752, 766, 868, 965, 967, 1051, 1053 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1004, 1036 |
| FatI | CATG | 2 cut(s) | 645, 764 |
| FauI | CCCGC | 5 cut(s) | 29, 86, 113, 248, 663 |
| FbaI | TGATCA | 1 cut(s) | 318 |
| Fnu4HI | GCNGC | 6 cut(s) | 109, 127, 147, 183, 652, 1025 |
| FokI | GGATG | 1 cut(s) | 482 |
| FriOI | GRGCYC | 1 cut(s) | 523 |
| Fsp4HI | GCNGC | 6 cut(s) | 109, 127, 147, 183, 652, 1025 |
| GlaI | GCGC | 3 cut(s) | 72, 250, 442 |
| GluI | GCNGC | 6 cut(s) | 109, 127, 147, 183, 652, 1025 |
| GsaI | CCCAGC | 1 cut(s) | 335 |
| HaeII | RGCGCY | 2 cut(s) | 252, 444 |
| HaeIII | GGCC | 1 cut(s) | 437 |
| HapII | CCGG | 9 cut(s) | 84, 252, 284, 410, 438, 444, 500, 527, 1037 |
| HgaI | GACGC | 5 cut(s) | 208, 231, 295, 369, 460 |
| HhaI | GCGC | 3 cut(s) | 73, 251, 443 |
| Hin1I | GRCGYC | 4 cut(s) | 242, 380, 441, 452 |
| Hin1II | CATG | 2 cut(s) | 649, 768 |
| Hin6I | GCGC | 3 cut(s) | 71, 249, 441 |
| HinP1I | GCGC | 3 cut(s) | 71, 249, 441 |
| HincII | GTYRAC | 2 cut(s) | 459, 622 |
| HindII | GTYRAC | 2 cut(s) | 459, 622 |
| HpaII | CCGG | 9 cut(s) | 84, 252, 284, 410, 438, 444, 500, 527, 1037 |
| HphI | GGTGA | 6 cut(s) | 37, 85, 280, 397, 427, 836 |
| Hpy166II | GTNNAC | 3 cut(s) | 459, 622, 761 |
| Hpy188I | TCNGA | 3 cut(s) | 41, 518, 718 |
| Hpy188III | TCNNGA | 3 cut(s) | 263, 265, 1060 |
| Hpy8I | GTNNAC | 3 cut(s) | 459, 622, 761 |
| Hpy99I | CGWCG | 8 cut(s) | 197, 200, 224, 247, 296, 352, 385, 535 |
| HpyAV | CCTTC | 2 cut(s) | 151, 980 |
| HpyCH4III | ACNGT | 3 cut(s) | 37, 292, 783 |
| HpyCH4IV | ACGT | 1 cut(s) | 533 |
| HpyCH4V | TGCA | 3 cut(s) | 126, 870, 1024 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 155, 188, 248, 527, 1033 |
| HpyF3I | CTNAG | 1 cut(s) | 522 |
| HpySE526I | ACGT | 1 cut(s) | 533 |
| Hsp92I | GRCGYC | 4 cut(s) | 242, 380, 441, 452 |
| Hsp92II | CATG | 2 cut(s) | 649, 768 |
| HspAI | GCGC | 3 cut(s) | 71, 249, 441 |
| KasI | GGCGCC | 1 cut(s) | 440 |
| KroI | GCCGGC | 3 cut(s) | 251, 437, 526 |
| KroNI | GCCGGC | 3 cut(s) | 253, 439, 528 |
| Ksp22I | TGATCA | 1 cut(s) | 318 |
| Kzo9I | GATC | 4 cut(s) | 318, 547, 946, 1017 |
| LguI | GCTCTTC | 1 cut(s) | 698 |
| LmnI | GCTCC | 4 cut(s) | 116, 134, 406, 518 |
| Lsp1109I | GCAGC | 3 cut(s) | 138, 638, 1036 |
| MaeII | ACGT | 1 cut(s) | 533 |
| MaeIII | GTNAC | 2 cut(s) | 286, 540 |
| MalI | GATC | 4 cut(s) | 320, 549, 948, 1019 |
| MbiI | CCGCTC | 1 cut(s) | 111 |
| MboI | GATC | 4 cut(s) | 318, 547, 946, 1017 |
| MboII | GAAGA | 4 cut(s) | 54, 280, 710, 715 |
| MfeI | CAATTG | 1 cut(s) | 552 |
| MflI | RGATCY | 1 cut(s) | 547 |
| MhlI | GDGCHC | 1 cut(s) | 523 |
| MluCI | AATT | 1 cut(s) | 552 |
| Mly113I | GGCGCC | 1 cut(s) | 441 |
| MlyI | GAGTC | 3 cut(s) | 274, 368, 699 |
| MmeI | TCCRAC | 2 cut(s) | 234, 456 |
| MreI | CGCCGGCG | 1 cut(s) | 251 |
| MroNI | GCCGGC | 3 cut(s) | 251, 437, 526 |
| MseI | TTAA | 1 cut(s) | 936 |
| MspI | CCGG | 9 cut(s) | 84, 252, 284, 410, 438, 444, 500, 527, 1037 |
| MspR9I | CCNGG | 3 cut(s) | 311, 445, 695 |
| MunI | CAATTG | 1 cut(s) | 552 |
| Mva1269I | GAATGC | 1 cut(s) | 708 |
| MvaI | CCWGG | 2 cut(s) | 311, 695 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 155, 188, 248, 527, 1033 |
| NaeI | GCCGGC | 3 cut(s) | 253, 439, 528 |
| NarI | GGCGCC | 1 cut(s) | 441 |
| NciI | CCSGG | 1 cut(s) | 445 |
| NcoI | CCATGG | 1 cut(s) | 764 |
| NdeII | GATC | 4 cut(s) | 318, 547, 946, 1017 |
| NgoMIV | GCCGGC | 3 cut(s) | 251, 437, 526 |
| NlaIII | CATG | 2 cut(s) | 649, 768 |
| NlaIV | GGNNCC | 3 cut(s) | 408, 442, 549 |
| NmeAIII | GCCGAG | 1 cut(s) | 356 |
| NmuCI | GTSAC | 1 cut(s) | 286 |
| PaeR7I | CTCGAG | 1 cut(s) | 263 |
| PciSI | GCTCTTC | 1 cut(s) | 698 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 195, 239, 270 |
| PctI | GAATGC | 1 cut(s) | 708 |
| PdiI | GCCGGC | 3 cut(s) | 253, 439, 528 |
| PfeI | GAWTC | 8 cut(s) | 4, 42, 87, 342, 352, 513, 668, 1008 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 557 |
| PfoI | TCCNGGA | 1 cut(s) | 693 |
| PkrI | GCNGC | 6 cut(s) | 110, 128, 148, 184, 653, 1026 |
| PleI | GAGTC | 3 cut(s) | 274, 368, 698 |
| PluTI | GGCGCC | 1 cut(s) | 444 |
| PpsI | GAGTC | 3 cut(s) | 274, 368, 698 |
| PshAI | GACNNNNGTC | 1 cut(s) | 284 |
| Psp124BI | GAGCTC | 1 cut(s) | 523 |
| Psp6I | CCWGG | 2 cut(s) | 309, 693 |
| PspEI | GGTNACC | 1 cut(s) | 286 |
| PspFI | CCCAGC | 1 cut(s) | 331 |
| PspGI | CCWGG | 2 cut(s) | 309, 693 |
| PspN4I | GGNNCC | 3 cut(s) | 408, 442, 549 |
| PspPI | GGNCC | 2 cut(s) | 226, 497 |
| PstNI | CAGNNNCTG | 1 cut(s) | 316 |
| PsuI | RGATCY | 1 cut(s) | 547 |
| Rsr2I | CGGWCCG | 1 cut(s) | 497 |
| RsrII | CGGWCCG | 1 cut(s) | 497 |
| SacI | GAGCTC | 1 cut(s) | 523 |
| SapI | GCTCTTC | 1 cut(s) | 698 |
| SaqAI | TTAA | 1 cut(s) | 936 |
| SatI | GCNGC | 6 cut(s) | 109, 127, 147, 183, 652, 1025 |
| Sau3AI | GATC | 4 cut(s) | 318, 547, 946, 1017 |
| Sau96I | GGNCC | 2 cut(s) | 226, 497 |
| SchI | GAGTC | 3 cut(s) | 274, 368, 699 |
| ScrFI | CCNGG | 3 cut(s) | 311, 445, 695 |
| SduI | GDGCHC | 1 cut(s) | 523 |
| SfcI | CTRYAG | 1 cut(s) | 166 |
| SfoI | GGCGCC | 1 cut(s) | 442 |
| Sfr274I | CTCGAG | 1 cut(s) | 263 |
| SgrAI | CRCCGGYG | 1 cut(s) | 251 |
| SinI | GGWCC | 2 cut(s) | 226, 497 |
| SlaI | CTCGAG | 1 cut(s) | 263 |
| SmlI | CTYRAG | 2 cut(s) | 263, 1058 |
| SmoI | CTYRAG | 2 cut(s) | 263, 1058 |
| Sse9I | AATT | 1 cut(s) | 552 |
| SspDI | GGCGCC | 1 cut(s) | 440 |
| SstI | GAGCTC | 1 cut(s) | 523 |
| StyD4I | CCNGG | 3 cut(s) | 309, 443, 693 |
| StyI | CCWWGG | 1 cut(s) | 764 |
| TaaI | ACNGT | 3 cut(s) | 37, 292, 783 |
| TaiI | ACGT | 1 cut(s) | 536 |
| TaqI | TCGA | 7 cut(s) | 177, 198, 222, 245, 264, 350, 671 |
| TasI | AATT | 1 cut(s) | 552 |
| TauI | GCSGC | 3 cut(s) | 111, 149, 185 |
| TfiI | GAWTC | 8 cut(s) | 4, 42, 87, 342, 352, 513, 668, 1008 |
| Tru1I | TTAA | 1 cut(s) | 936 |
| Tru9I | TTAA | 1 cut(s) | 936 |
| TscAI | CASTG | 2 cut(s) | 321, 665 |
| TseFI | GTSAC | 1 cut(s) | 286 |
| TseI | GCWGC | 3 cut(s) | 126, 651, 1024 |
| Tsp45I | GTSAC | 1 cut(s) | 286 |
| TspDTI | ATGAA | 2 cut(s) | 898, 1046 |
| TspGWI | ACGGA | 2 cut(s) | 345, 1056 |
| TspRI | CASTG | 2 cut(s) | 321, 665 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 557 |
| VpaK11BI | GGWCC | 2 cut(s) | 226, 497 |
| XhoI | CTCGAG | 1 cut(s) | 263 |