Rorug02G0241300

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000031
Physical Location & Seq
Reverse (-)
24790754 .. 24809650
18897 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0241300.1

Sequence Viewer

Length: 3375 bp
ATGGAGAGAGTTACTTGGTTCTTCCTGGTATACTTGATCTGTTGTGAGGCGGCTAGCTGCTTGACTATGGCAGCACAAACCAACCTTAACATCACCACAGACCGATCTGCTCTTCTTGCTCTAAAAGACCATATCACCAGTGACCCTCAAAACATGATCCTCACCAATTGGTCAACCACCACCCCTATTTGCAACTGGGTTGGCGTCATTTGTGGTGCACGCCATCATCGAGTCGTAGAGTTGAACCTCTCTTACTTTGGTCTCGCGGGCACCATTCCTCCTGAGCTAGGAAACTTATCATTGCTTGTTGATCTGGACATCCAAAATAACAGTTTCCAGGGTACCTTGCCTGACGAGTTGACTCGCCTGCGCCAGTTGAAGTTCATTAACTTGGGATACAACAAGTTTATGGGAGTGATACCGTCATGGTTTGGGTCCTTATCCAAACTTCAAGGATTCATGTTGTTTGGTAATCAATTTGCAAGTTCTATACCAGCTGCCATCTTCAACTTATCTGCTCTTCAAATATTTAATCTGAGTCATAACCAACTCTCAGGTAGAATCCCCAGAGAAATTAGGAACCTAACAACGTTGAAGGTGATCAACCTTGATTATAATAATTTTATAGAAATTCCAAATGAGATCGGCACCTTGAATCAGCTTGAAGAGTTGTTTGTGCAAAATAATGCCTTAAAAGGGCCTATTCCTATGGTCGTCTTCAATATGTCATCTTTGACTAGAGTAAATTTATATGGAAACAAGTTGAATGGTAGAATTCCCGACAATATATGTCAACATCTTCCAAATATCCAAGAGTTGAATTTGGGAAGGAATCAGTTTGATGGTCCACTTCCATCCAAGTTATGGCAATGCAAACAACTTCTTGTATTAGATTTGGGGGATAACAAGTTCAGTGGAAGAATACCCAAAGATATTGGGAACTTAACTCGGATAAAGAAGATTGGGTTTCGCACCAACAACTTAACAGGTCCCATACCATATGAGATTGGTTATCTTCTAAATTTAGAGTGGTTGTCGCTCCGTCAAAATAATCTAAATGGCCATATCCCATCCTCAATCTTCAATATCTCCACAATAAAAGTATTAGCTCTCAGCTTCAATCAGCTTTCAAGTAGCCTCCCAGCAGACATAGGCCTTGCGCTTCCAAAACTTGAAAAGTTTTATGCAGGAGGGAATCACCTCAGTGGAGTAATCCCCAAATCCTTCTCCAATGCTTCTGAGCTTCGGATTCTACAACTGGCACGTAACTCTTTTTCGGGATTCATTCCAAGCACTCTATGCCTCTTGACAAACCTTGAAGTGCTCAGATTGTTCGTGAATAATTTGACCATTGATACCTCTACTCCAGAAGTTAATATTTTGTCTTGTCTGCCAAATCTTAGAAATTTGAGGCGGTTAAACTTCGGAAACAATCCATTAAATGCGAAGCTTTCGATTTCCTTCAGTAATTTCTCTGCATCACTCCAATATCTTCTGTTAACAAACTGCAGCTTGAGAGGTAACATCCCCAGTGATATTGGGAATTTGAGTAGCTTGATACGTTTAAACCTGGAAGACAATCAATTGAGCGGGCCAATTCCAAGCTCAATGGGAAGACTACATGATCTTCAAGGTTTGGATATGAGTGATAACACATTGCAAGGATACATTCCAGATGAGCTTTGTCAACTAGAAAAGTTAAGTGACTTGTATTTGGGTGGGAATCAACTCTCTGGTTCTGTACCTTCCTGCTTGGGTAATCTAACAGCATCTCTAAGGTATCTATACTTAGATTCCAATTTGTTGAATTCCACCATACCATCTACCTTGTGGGGACTTACAGATATCTTGGGACTAGACTTGTCATCCAATTCTCTCATTGGACCTCTATCAGGTGGTGTTGGTAATTTGAAAGTTGCGATATCCTTGGATGTATCATACAACCAATTATCTGGTAGTATACCAAGCAGCGTTGGGAGTTTATTGAATTTGGTCAATCTCTCCTTAGCACATAATAATCTAGAAGGCCTTATTCCTAGTTCCTTTGCTACCTGTTTAAGCTTAGAACGATTGGATTTATCTCAGAACAGTCTCTCTGGAGTGATTCCAAAGTCTCTTGAAGCACTCTCACATCTCAAGTATCTGAATCTATCTTTCAACATACTCCAAGGAGAAATTCCAACCGGCGGTCCATTCAAAAACTTCTCTGCTGAATCATTTGTTTCAAACCGTGGACTTTGTGGTGCATCCCAATTCCAAGTTCCACCATGCAAAAGAAAAACTAGCATAGCTATCTTGAAGTATGTTATTCCGGGGATCTTGTCAGCAATGCTTCTAGCGACCTCCATGATTTGGTTGTTGATGTTGCGTAGAAAAAAGAATGTGAAAGCAGCAGCAAATTCTGTCTTCACGCCTCAAGATTTCTGGAGAAGAGTTTCATACCAAGAGCTCCTAAGTGCGACAGATGGATTCAATGAAAGCAACTTACTTGGTACTGGGGGTTTTGGCTCAGTATATAAAGGAACATTGTCAGATGGGATGGACATTGCGATAAAGGTTTTCAATTTGGAGTTGGAAGACGCATTTTCAAGTTTTCAGGTTGAATGTGAAATGCTAAGTAATGTTCATCACCGAAATCTTGTCAAAGTCATCACTTGTTGCAGTCAAGTGGATTTCAAAGGTCTTGTATTGAATTATATGCCTAATGGGAGCCTTGAGAAGTGGTTGTATTCTCAGAATTCTTCTTTGAACATAATGCAGAGGTTGGATATAATGATAGATGTTGCATCGGCATTGGAGTACCTTCATCATGGTTATGAAGTACCTATTGTCCATTGTGATTTGAAGCCAAGCAACATCCTACTAGATGATGATATGGTTGCACATGTTGCTGATTTTGGTATTGCAAAACTTTTGGGTGGAGGAGATTCTATGACTCAAACCATGACCTTGGCCACAATTGGGTATATGGCTCCAGAGTATGGAATGCAAGGAATAGTGACCAGAAGAGGTGATGTGTATAGTTTTGGTATTGTAGTGATGGAAACATTCACAAGAAGGAAGCCAACCGATGAGATCTTCACTGGGGAAATGAGACTGAATCAATGGGTTGCAAATTTCCTAGTTGCAGATGCGATAGTTGAAGTTGTGGATGCTAGTTTACTTGGAAGCGAGGAGGCTCATGACTTCGTGAGCAAGAGGGAGTGCTTATCATCCATTATGAGATTAGCTGTCGCTTGTTCAGCAGAATCACCGGAAGAGAGGATAAACATGCAAGAGGCTGTAGCCATGCTTAAAACAATCAAGATCAAGTTTTCAAATGATTGCTGCAAGAGGTGTGGTGGTGAATCGTCGTCCTGTTTCGTAACCCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

1124

Amino Acids

123.7

Weight (kDa)

6.23

Isoelectric Point (pI)

33.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 33 - 71 2.2e-10 Leucine rich repeat N-terminal domain
LRR_14 PF23598 82 - 158 5.1e-06 Leucine-rich repeat region
LRR_14 PF23598 168 - 273 4.1e-08 Leucine-rich repeat region
LRR_14 PF23598 287 - 371 2.8e-06 Leucine-rich repeat region
LRR_14 PF23598 335 - 504 1.3e-09 Leucine-rich repeat region
LRR_8 PF13855 389 - 449 5.5e-06 Leucine rich repeat
LRR_14 PF23598 486 - 598 3.6e-08 Leucine-rich repeat region
LRR_8 PF13855 518 - 577 1.1e-07 Leucine rich repeat
LRR_8 PF13855 663 - 720 1e-10 Leucine rich repeat
Pkinase PF00069 825 - 1096 4.1e-41 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 828 - 1096 1.5e-42 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000031)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G05755
fragaria_vesca FvH4_1g13571 FvH4_2g06951 FvH4_2g09612 FvH4_3g24991 FvH4_3g39131 FvH4_4g01331 FvH4_5g11071 FvH4_5g22144 FvH4_5g22144 FvH4_5g27541 FvH4_5g38601 FvH4_6g09211 FvH4_6g17161 FvH4_6g30101 FvH4_6g30102 FvH4_6g42420 FvH4_6g42420 FvH4_6g42420 FvH4_6g42420 FvH4_6g42420 FvH4_6g42420 FvH4_6g51131 FvH4_7g28851
malus_domestica MD02G1021900.v1.1 MD02G1050700.v1.1 MD02G1314000.v1.1 MD05G1244100.v1.1 MD07G1021300.v1.1 MD09G1113200.v1.1 MD09G1113300.v1.1 MD13G1019000.v1.1 MD17G1103400.v1.1
prunus_persica Prupe.1G484600_v2.0.a1 Prupe.3G211200_v2.0.a1 Prupe.3G211200_v2.0.a1 Prupe.4G283800_v2.0.a1
pyrus_communis pycom01g13080 pycom03g05530 pycom05g09360 pycom05g20240 pycom06g06350 pycom06g14660 pycom09g03750 pycom13g22930 pycom14g00800 pycom15g35930 pycom17g09770 pycom17g25010
rosa_chinensis RchiOBHm_Chr1g0316991 RchiOBHm_Chr1g0321411 RchiOBHm_Chr1g0341061 RchiOBHm_Chr1g0352021 RchiOBHm_Chr1g0357231 RchiOBHm_Chr1g0361641 RchiOBHm_Chr1g0379151 RchiOBHm_Chr2g0084861 RchiOBHm_Chr2g0092021 RchiOBHm_Chr2g0102721 RchiOBHm_Chr2g0119161 RchiOBHm_Chr2g0120021 RchiOBHm_Chr2g0120031 RchiOBHm_Chr2g0120451 RchiOBHm_Chr2g0129631 RchiOBHm_Chr2g0133661 RchiOBHm_Chr2g0140031 RchiOBHm_Chr2g0154361 RchiOBHm_Chr2g0158311 RchiOBHm_Chr2g0160431 RchiOBHm_Chr2g0167951 RchiOBHm_Chr2g0168801 RchiOBHm_Chr3g0451531 RchiOBHm_Chr3g0453641 RchiOBHm_Chr3g0453831 RchiOBHm_Chr3g0455401 RchiOBHm_Chr3g0457461 RchiOBHm_Chr3g0459251 RchiOBHm_Chr3g0462451 RchiOBHm_Chr3g0465511 RchiOBHm_Chr3g0466111 RchiOBHm_Chr3g0469201 RchiOBHm_Chr3g0472791 RchiOBHm_Chr3g0472841 RchiOBHm_Chr4g0391691 RchiOBHm_Chr4g0393351 RchiOBHm_Chr4g0395061 RchiOBHm_Chr4g0395191 RchiOBHm_Chr4g0397541 RchiOBHm_Chr4g0402261 RchiOBHm_Chr4g0409421 RchiOBHm_Chr4g0417481 RchiOBHm_Chr4g0428291 RchiOBHm_Chr4g0434281 RchiOBHm_Chr4g0437231 RchiOBHm_Chr4g0439261 RchiOBHm_Chr5g0000531 RchiOBHm_Chr5g0016091 RchiOBHm_Chr5g0018801 RchiOBHm_Chr5g0026401 RchiOBHm_Chr5g0051821 RchiOBHm_Chr5g0062261 RchiOBHm_Chr5g0070711 RchiOBHm_Chr5g0074731 RchiOBHm_Chr5g0077831 RchiOBHm_Chr6g0251621 RchiOBHm_Chr6g0253181 RchiOBHm_Chr6g0258241 RchiOBHm_Chr6g0259301 RchiOBHm_Chr6g0263381 RchiOBHm_Chr6g0264461 RchiOBHm_Chr6g0278601 RchiOBHm_Chr6g0299951 RchiOBHm_Chr7g0184971 RchiOBHm_Chr7g0185631 RchiOBHm_Chr7g0200601 RchiOBHm_Chr7g0206171 RchiOBHm_Chr7g0222341 RchiOBHm_Chr7g0237631
rosa_laevigata RLG00000012173 RLG00000021075
rosa_multiflora Rmu_co8065174.1_g000001 Rmu_co8074360.1_g000001 Rmu_co8095164.1_g000001 Rmu_co8204978.1_g000001 Rmu_co8329721.1_g000001 Rmu_co8347171.1_g000001 Rmu_co8395661.1_g000001 Rmu_co8466967.1_g000001 Rmu_sc0000030.1_g000008 Rmu_sc0000290.1_g000015 Rmu_sc0000294.1_g000012 Rmu_sc0000319.1_g000020 Rmu_sc0000418.1_g000014 Rmu_sc0000423.1_g000010 Rmu_sc0000427.1_g000013 Rmu_sc0000430.1_g000011 Rmu_sc0000487.1_g000037 Rmu_sc0000765.1_g000028 Rmu_sc0000770.1_g000037 Rmu_sc0000785.1_g000011 Rmu_sc0000811.1_g000011 Rmu_sc0000848.1_g000004 Rmu_sc0000897.1_g000007 Rmu_sc0000955.1_g000014 Rmu_sc0001004.1_g000019 Rmu_sc0001010.1_g000068 Rmu_sc0001021.1_g000008 Rmu_sc0001084.1_g000013 Rmu_sc0001111.1_g000002 Rmu_sc0001190.1_g000015 Rmu_sc0001308.1_g000013 Rmu_sc0001398.1_g000010 Rmu_sc0001680.1_g000005 Rmu_sc0001926.1_g000017 Rmu_sc0001942.1_g000074 Rmu_sc0002068.1_g000010 Rmu_sc0002113.1_g000019 Rmu_sc0002299.1_g000032 Rmu_sc0002531.1_g000026 Rmu_sc0002549.1_g000005 Rmu_sc0002634.1_g000001 Rmu_sc0002640.1_g000014 Rmu_sc0002831.1_g000005 Rmu_sc0002848.1_g000018 Rmu_sc0003005.1_g000027 Rmu_sc0003076.1_g000012 Rmu_sc0003124.1_g000001 Rmu_sc0003143.1_g000004 Rmu_sc0003143.1_g000005 Rmu_sc0003143.1_g000006 Rmu_sc0003302.1_g000009 Rmu_sc0003368.1_g000035 Rmu_sc0003462.1_g000001 Rmu_sc0003692.1_g000016 Rmu_sc0003855.1_g000007 Rmu_sc0003858.1_g000008 Rmu_sc0004277.1_g000031 Rmu_sc0004732.1_g000013 Rmu_sc0004748.1_g000005 Rmu_sc0005091.1_g000024 Rmu_sc0005124.1_g000001 Rmu_sc0005167.1_g000001 Rmu_sc0005242.1_g000003 Rmu_sc0005486.1_g000005 Rmu_sc0005597.1_g000008 Rmu_sc0005653.1_g000004 Rmu_sc0006080.1_g000016 Rmu_sc0006371.1_g000003 Rmu_sc0006415.1_g000001 Rmu_sc0006522.1_g000003 Rmu_sc0006596.1_g000007 Rmu_sc0006991.1_g000005 Rmu_sc0007070.1_g000004 Rmu_sc0007737.1_g000005 Rmu_sc0007856.1_g000001 Rmu_sc0008241.1_g000001 Rmu_sc0008393.1_g000006 Rmu_sc0008563.1_g000008 Rmu_sc0008904.1_g000006 Rmu_sc0010313.1_g000014 Rmu_sc0010693.1_g000002 Rmu_sc0010917.1_g000011 Rmu_sc0011232.1_g000003 Rmu_sc0011978.1_g000005 Rmu_sc0012782.1_g000003 Rmu_sc0013716.1_g000002 Rmu_sc0015429.1_g000002 Rmu_sc0015649.1_g000014 Rmu_sc0021955.1_g000004 Rmu_sc0024117.1_g000001 Rmu_sc0024816.1_g000001 Rmu_sc0024816.1_g000006 Rmu_sc0026593.1_g000003 Rmu_sc0028245.1_g000001 Rmu_sc0029783.1_g000006 Rmu_sc0030817.1_g000001 Rmu_sc0031096.1_g000001 Rmu_sc0034014.1_g000001 Rmu_sc0036569.1_g000001 Rmu_sc0039034.1_g000001 Rmu_ssc0000004.1_g000015 Rmu_ssc0000053.1_g000002 Rmu_ssc0000126.1_g000069 Rmu_ssc0000211.1_g000020 Rmu_ssc0000295.1_g000005 Rmu_ssc0000359.1_g000057 Rmu_ssc0000385.1_g000011 Rmu_ssc0000416.1_g000004 Rmu_ssc0000434.1_g000018
rosa_roxburghii Rroxscaffold_159G00432920 Rroxscaffold_2G00091500 Rroxscaffold_2G00123510 Rroxscaffold_2G00124730 Rroxscaffold_2G00126030 Rroxscaffold_2G00138160 Rroxscaffold_2G00153260 Rroxscaffold_3G00224470 Rroxscaffold_3G00244670 Rroxscaffold_3G00261920 Rroxscaffold_3G00264150 Rroxscaffold_3G00270420 Rroxscaffold_4G00285150 Rroxscaffold_4G00299830 Rroxscaffold_4G00311290 Rroxscaffold_4G00323970 Rroxscaffold_5G00374550 Rroxscaffold_6G00427060 Rroxscaffold_7G00169160 Rroxscaffold_7G00174970
rosa_rugosa Rorug01G0012500 Rorug01G0046200 Rorug01G0118800 Rorug01G0120200 Rorug01G0135400.1 Rorug01G0174200 Rorug01G0204600 Rorug01G0253500 Rorug01G0290500 Rorug01G0290800 Rorug01G0312100 Rorug01G0333700 Rorug01G0339600 Rorug01G0377800 Rorug01G0400400 Rorug01G0402200 Rorug01G0410700 Rorug01G0431400 Rorug02G0011900 Rorug02G0012500 Rorug02G0022300 Rorug02G0062400 Rorug02G0085300 Rorug02G0091800 Rorug02G0104500 Rorug02G0125400 Rorug02G0131000 Rorug02G0147300 Rorug02G0171000 Rorug02G0181500 Rorug02G0196900 Rorug02G0207200 Rorug02G0226600 Rorug02G0241300 Rorug02G0274300 Rorug02G0280600 Rorug02G0280800 Rorug02G0304600 Rorug02G0304700 Rorug02G0338800 Rorug02G0375800 Rorug02G0379300 Rorug02G0379400 Rorug02G0447600 Rorug02G0459900 Rorug02G0467200 Rorug02G0535400 Rorug03G0072300 Rorug03G0218900 Rorug03G0223700 Rorug03G0231500 Rorug03G0257200 Rorug03G0257300 Rorug03G0257400 Rorug03G0265700 Rorug03G0290200 Rorug03G0291300 Rorug03G0311000 Rorug03G0326900 Rorug03G0332700 Rorug03G0352000 Rorug03G0369700.1 Rorug04G0014000 Rorug04G0014500 Rorug04G0124100 Rorug04G0142100 Rorug04G0151400 Rorug04G0160700 Rorug04G0186400 Rorug04G0227600 Rorug04G0253800 Rorug04G0274400 Rorug04G0274600 Rorug04G0295600 Rorug04G0302000 Rorug04G0320600 Rorug04G0331300 Rorug04G0352200 Rorug04G0407000 Rorug04G0430300 Rorug04G0443000 Rorug04G0446400 Rorug04G0459000 Rorug05G0042400 Rorug05G0042500 Rorug05G0064900 Rorug05G0074300 Rorug05G0097700 Rorug05G0102300 Rorug05G0102300 Rorug05G0123700 Rorug05G0145800 Rorug05G0152900 Rorug05G0175900 Rorug05G0182100 Rorug05G0196000 Rorug05G0207000 Rorug05G0212800 Rorug05G0226400 Rorug05G0241500 Rorug05G0264800.1 Rorug05G0269600 Rorug05G0298200 Rorug05G0304300 Rorug05G0344300 Rorug05G0382300 Rorug05G0392300.1 Rorug05G0427900 Rorug05G0433500 Rorug05G0452700 Rorug05G0464600 Rorug05G0475800 Rorug05G0488600 Rorug05G0493000 Rorug05G0504800 Rorug05G0505500.1 Rorug05G0508400 Rorug05G0545800 Rorug05G0587000 Rorug05G0591100.1 Rorug06G0013200 Rorug06G0037700 Rorug06G0098200 Rorug06G0184500 Rorug06G0185300 Rorug06G0188200 Rorug06G0208300 Rorug06G0212900 Rorug06G0251500 Rorug06G0328000 Rorug06G0366100 Rorug06G0367400 Rorug06G0371200 Rorug06G0393500 Rorug06G0423000 Rorug06G0440500 Rorug06G0445400 Rorug06G0451700 Rorug06G0479400 Rorug06G0479500 Rorug06G0479600 Rorug06G0479700 Rorug06G0479800 Rorug06G0483100 Rorug07G0001200 Rorug07G0005200 Rorug07G0068600 Rorug07G0109300 Rorug07G0115500 Rorug07G0117000 Rorug07G0123500 Rorug07G0128000 Rorug07G0128100 Rorug07G0225500 Rorug07G0280200 Rorug07G0317300
rosa_samantha Rh1AG251400 Rh1BG133300 Rh1CG079900 Rh1CG235600 Rh1DG168000 Rh2AG533100 Rh2BG546900 Rh2CG517000 Rh2DG237900 Rh2DG555900 Rh3CG293400 Rh4AG419800 Rh4BG306300 Rh4CG446100 Rh5AG268900 Rh5AG282600 Rh5BG006600 Rh5BG345700 Rh5CG468100 Rh6CG190700 Rh6DG111900 Rh7BG172200 Rh7BG412200
rosa_wichuraiana Rw0G003620 Rw0G004000 Rw0G011770 Rw0G019070 Rw0G020070 Rw1G002990 Rw1G003550 Rw1G003860 Rw1G005930 Rw1G018430 Rw1G021160 Rw1G023820 Rw1G032700 Rw1G035790 Rw1G036160 Rw1G038660 Rw1G039380 Rw2G016120 Rw2G018680 Rw2G026860 Rw2G028670 Rw2G040870 Rw2G041040 Rw2G041410 Rw2G044140 Rw2G047570 Rw3G019760 Rw4G031020 Rw5G003700 Rw5G004830 Rw5G037470 Rw5G047400 Rw6G020150 Rw6G024010 Rw6G026600 Rw7G002480 Rw7G004430 Rw7G011870 Rw7G035520 Rw7G041260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 615
Acc65I GGTACC 1 cut(s) 341
AccB1I GGYRCC 3 cut(s) 269, 341, 647
AccB7I CCANNNNNTGG 3 cut(s) 864, 2352, 2981
AccBSI CCGCTC 1 cut(s) 1590
AccI GTMKAC 2 cut(s) 30, 1960
AccII CGCG 1 cut(s) 266
AciI CCGC 5 cut(s) 50, 266, 1414, 1590, 2187
AclI AACGTT 1 cut(s) 590
AclWI GGATC 2 cut(s) 151, 2324
AcoI YGGCCR 2 cut(s) 1060, 2952
AcuI CTGAAG 1 cut(s) 1447
AcyI GRCGYC 1 cut(s) 204
AfaI GTAC 5 cut(s) 343, 1743, 2494, 2801, 2823
AfiI CCNNNNNNNGG 8 cut(s) 287, 696, 864, 1892, 2186, 2352, 2961, 2981
AflIII ACRYGT 1 cut(s) 2884
AjnI CCWGG 3 cut(s) 24, 336, 1569
AjuI GAANNNNNNNTTGG 4 cut(s) 2160, 2192, 2244, 2276
AleI CACNNNNGTG 1 cut(s) 1203
AloI GAACNNNNNNTCC 2 cut(s) 893, 925
Alw21I GWGCWC 3 cut(s) 220, 1326, 2451
Alw26I GTCTC 4 cut(s) 266, 2096, 2118, 3088
Alw44I GTGCAC 1 cut(s) 216
AlwI GGATC 2 cut(s) 151, 2324
AoxI GGCC 6 cut(s) 698, 1060, 1153, 1592, 2026, 2952
ApaLI GTGCAC 1 cut(s) 216
ApeKI GCWGC 8 cut(s) 57, 71, 497, 1509, 1968, 2390, 2393, 3327
Asp700I GAANNNNTTC 1 cut(s) 2434
Asp718I GGTACC 1 cut(s) 341
AspLEI GCGC 2 cut(s) 372, 1162
AspS9I GGNCC 7 cut(s) 435, 698, 845, 989, 1592, 1883, 2189
AsuC2I CCSGG 1 cut(s) 2313
AsuHPI GGTGA 9 cut(s) 85, 127, 154, 610, 1190, 2621, 3023, 3243, 3356
AsuNHI GCTAGC 1 cut(s) 53
AvaII GGWCC 5 cut(s) 435, 845, 989, 1883, 2189
BaeGI GKGCMC 2 cut(s) 220, 272
BalI TGGCCA 2 cut(s) 1062, 2954
BanI GGYRCC 3 cut(s) 269, 341, 647
BanII GRGCYC 1 cut(s) 2451
BbsI GAAGAC 5 cut(s) 709, 1581, 1621, 2398, 2583
Bbv12I GWGCWC 3 cut(s) 220, 1326, 2451
BbvI GCAGC 8 cut(s) 44, 83, 484, 1521, 1980, 2402, 2405, 3314
BciT130I CCWGG 3 cut(s) 26, 338, 1571
BciVI GTATCC 2 cut(s) 389, 1658
BclI TGATCA 1 cut(s) 600
BcnI CCSGG 1 cut(s) 2313
BcoDI GTCTC 4 cut(s) 266, 2096, 2118, 3088
BfmI CTRYAG 2 cut(s) 1507, 3282
BfuI GTATCC 2 cut(s) 389, 1658
BglII AGATCT 1 cut(s) 3075
BisI GCNGC 9 cut(s) 51, 58, 72, 498, 1510, 1969, 2391, 2394, 3328
BlsI GCNGC 9 cut(s) 52, 59, 73, 499, 1511, 1970, 2392, 2395, 3329
Bme1390I CCNGG 4 cut(s) 26, 338, 1571, 2313
Bme18I GGWCC 5 cut(s) 435, 845, 989, 1883, 2189
BmgT120I GGNCC 7 cut(s) 435, 698, 845, 989, 1592, 1883, 2189
BmiI GGNNCC 8 cut(s) 271, 343, 436, 581, 649, 991, 2711, 2973
BmrFI CCNGG 4 cut(s) 26, 338, 1571, 2313
BmrI ACTGGG 4 cut(s) 205, 1524, 2505, 3093
BmsI GCATC 6 cut(s) 1487, 1778, 2255, 2795, 3121, 3142
BmtI GCTAGC 1 cut(s) 57
BmuI ACTGGG 4 cut(s) 205, 1524, 2505, 3093
BpiI GAAGAC 5 cut(s) 709, 1581, 1621, 2398, 2583
BpmI CTGGAG 4 cut(s) 1350, 2118, 2446, 2958
Bpu10I CCTNAGC 2 cut(s) 282, 2005
BpuEI CTTGAG 4 cut(s) 1534, 2120, 2400, 2735
BpuMI CCSGG 1 cut(s) 2313
BsaAI YACGTR 1 cut(s) 1265
BsaHI GRCGYC 1 cut(s) 204
BsaI GGTCTC 1 cut(s) 266
BsaJI CCNNGG 6 cut(s) 337, 1926, 2167, 2230, 2312, 2949
BsaWI WCCGGW 1 cut(s) 3253
BsaXI ACNNNNNCTCC 4 cut(s) 262, 292, 1348, 1378
Bsc4I CCNNNNNNNGG 8 cut(s) 287, 696, 864, 1892, 2186, 2352, 2961, 2981
Bse118I RCCGGY 1 cut(s) 2183
Bse1I ACTGG 7 cut(s) 138, 200, 373, 1263, 1530, 2500, 3088
Bse3DI GCAATG 5 cut(s) 299, 875, 1655, 2334, 2544
BseBI CCWGG 3 cut(s) 26, 338, 1571
BseDI CCNNGG 6 cut(s) 337, 1926, 2167, 2230, 2312, 2949
BseLI CCNNNNNNNGG 8 cut(s) 287, 696, 864, 1892, 2186, 2352, 2961, 2981
BseMI GCAATG 5 cut(s) 299, 875, 1655, 2334, 2544
BseNI ACTGG 7 cut(s) 138, 200, 373, 1263, 1530, 2500, 3088
BseRI GAGGAG 2 cut(s) 2937, 3188
BseSI GKGCMC 2 cut(s) 220, 272
BseXI GCAGC 8 cut(s) 44, 83, 484, 1521, 1980, 2402, 2405, 3314
BseYI CCCAGC 1 cut(s) 1141
Bsh1236I CGCG 1 cut(s) 266
BshFI GGCC 6 cut(s) 700, 1062, 1155, 1594, 2028, 2954
BshNI GGYRCC 3 cut(s) 269, 341, 647
BsiHKAI GWGCWC 3 cut(s) 220, 1326, 2451
BsiSI CCGG 3 cut(s) 2184, 2312, 3254
BslFI GGGAC 3 cut(s) 975, 1848, 1866
BslI CCNNNNNNNGG 8 cut(s) 287, 696, 864, 1892, 2186, 2352, 2961, 2981
BsmAI GTCTC 4 cut(s) 266, 2096, 2118, 3088
BsmFI GGGAC 3 cut(s) 975, 1848, 1866
BsmI GAATGC 1 cut(s) 2991
BsnI GGCC 6 cut(s) 700, 1062, 1155, 1594, 2028, 2954
Bso31I GGTCTC 1 cut(s) 266
Bsp1286I GDGCHC 4 cut(s) 220, 272, 1326, 2451
BspACI CCGC 5 cut(s) 50, 266, 1414, 1590, 2187
BspANI GGCC 6 cut(s) 700, 1062, 1155, 1594, 2028, 2954
BspFNI CGCG 1 cut(s) 266
BspHI TCATGA 1 cut(s) 3181
BspLI GGNNCC 8 cut(s) 271, 343, 436, 581, 649, 991, 2711, 2973
BspMAI CTGCAG 1 cut(s) 1511
BspOI GCTAGC 1 cut(s) 57
BspPI GGATC 2 cut(s) 151, 2324
BspQI GCTCTTC 2 cut(s) 117, 525
BspT107I GGYRCC 3 cut(s) 269, 341, 647
BspTNI GGTCTC 1 cut(s) 266
BsrBI CCGCTC 1 cut(s) 1590
BsrDI GCAATG 5 cut(s) 299, 875, 1655, 2334, 2544
BsrFI RCCGGY 1 cut(s) 2183
BsrI ACTGG 7 cut(s) 138, 200, 373, 1263, 1530, 2500, 3088
BssAI RCCGGY 1 cut(s) 2183
BssECI CCNNGG 6 cut(s) 337, 1926, 2167, 2230, 2312, 2949
BssNAI GTATAC 2 cut(s) 31, 1961
BssNI GRCGYC 1 cut(s) 204
BssT1I CCWWGG 3 cut(s) 1926, 2167, 2949
Bst1107I GTATAC 2 cut(s) 31, 1961
Bst2UI CCWGG 3 cut(s) 26, 338, 1571
Bst4CI ACNGT 4 cut(s) 332, 423, 2090, 2231
Bst6I CTCTTC 6 cut(s) 117, 525, 660, 2425, 3001, 3252
BstACI GRCGYC 1 cut(s) 204
BstAPI GCANNNNNTGC 2 cut(s) 1299, 2888
BstBAI YACGTR 1 cut(s) 1265
BstC8I GCNNGC 5 cut(s) 55, 220, 268, 368, 1592
BstDSI CCRYGG 1 cut(s) 2230
BstENI CCTNNNNNAGG 2 cut(s) 285, 1890
BstFNI CGCG 1 cut(s) 266
BstHHI GCGC 2 cut(s) 372, 1162
BstMAI GTCTC 4 cut(s) 266, 2096, 2118, 3088
BstMWI GCNNNNNNNGC 4 cut(s) 116, 1299, 2888, 3242
BstNI CCWGG 3 cut(s) 26, 338, 1571
BstNSI RCATGY 2 cut(s) 2888, 3274
BstSCI CCNGG 4 cut(s) 24, 336, 1569, 2311
BstSFI CTRYAG 2 cut(s) 1507, 3282
BstSLI GKGCMC 2 cut(s) 220, 272
BstUI CGCG 1 cut(s) 266
BstV1I GCAGC 8 cut(s) 44, 83, 484, 1521, 1980, 2402, 2405, 3314
BstV2I GAAGAC 5 cut(s) 709, 1581, 1621, 2398, 2583
BstX2I RGATCY 2 cut(s) 2316, 3075
BstXI CCANNNNNNTGG 2 cut(s) 1952, 2950
BstYI RGATCY 2 cut(s) 2316, 3075
BstZ17I GTATAC 2 cut(s) 31, 1961
BsuI GTATCC 2 cut(s) 389, 1658
BsuRI GGCC 6 cut(s) 700, 1062, 1155, 1594, 2028, 2954
BtgI CCRYGG 1 cut(s) 2230
BtsIMutI CAGTG 5 cut(s) 145, 919, 1210, 1537, 3081
Cac8I GCNNGC 5 cut(s) 55, 220, 268, 368, 1592
CciI TCATGA 1 cut(s) 3181
CfoI GCGC 2 cut(s) 372, 1162
Cfr10I RCCGGY 1 cut(s) 2183
Cfr13I GGNCC 7 cut(s) 435, 698, 845, 989, 1592, 1883, 2189
CseI GACGC 2 cut(s) 193, 2588
Csp6I GTAC 5 cut(s) 342, 1742, 2493, 2800, 2822
CspCI CAANNNNNGTGG 4 cut(s) 895, 930, 3319, 3354
CviQI GTAC 5 cut(s) 342, 1742, 2493, 2800, 2822
DraI TTTAAA 1 cut(s) 1566
EaeI YGGCCR 2 cut(s) 1060, 2952
Eam1104I CTCTTC 6 cut(s) 117, 525, 660, 2425, 3001, 3252
EarI CTCTTC 6 cut(s) 117, 525, 660, 2425, 3001, 3252
Ecl136II GAGCTC 1 cut(s) 2449
Eco130I CCWWGG 3 cut(s) 1926, 2167, 2949
Eco147I AGGCCT 2 cut(s) 1155, 2028
Eco24I GRGCYC 1 cut(s) 2451
Eco31I GGTCTC 1 cut(s) 266
Eco32I GATATC 2 cut(s) 1846, 1923
Eco47I GGWCC 5 cut(s) 435, 845, 989, 1883, 2189
Eco53kI GAGCTC 1 cut(s) 2449
Eco57I CTGAAG 1 cut(s) 1447
EcoICRI GAGCTC 1 cut(s) 2449
EcoNI CCTNNNNNAGG 2 cut(s) 285, 1890
EcoO109I RGGNCCY 3 cut(s) 435, 698, 989
EcoRI GAATTC 3 cut(s) 774, 1807, 2737
EcoRII CCWGG 3 cut(s) 24, 336, 1569
EcoRV GATATC 2 cut(s) 1846, 1923
EcoT14I CCWWGG 3 cut(s) 1926, 2167, 2949
EcoT38I GRGCYC 1 cut(s) 2451
ErhI CCWWGG 3 cut(s) 1926, 2167, 2949
FaqI GGGAC 3 cut(s) 975, 1848, 1866
FauI CCCGC 2 cut(s) 259, 1583
FauNDI CATATG 1 cut(s) 1000
FbaI TGATCA 1 cut(s) 600
FblI GTMKAC 2 cut(s) 30, 1960
Fnu4HI GCNGC 9 cut(s) 51, 58, 72, 498, 1510, 1969, 2391, 2394, 3328
FriOI GRGCYC 1 cut(s) 2451
Fsp4HI GCNGC 9 cut(s) 51, 58, 72, 498, 1510, 1969, 2391, 2394, 3328
GlaI GCGC 2 cut(s) 371, 1161
GluI GCNGC 9 cut(s) 51, 58, 72, 498, 1510, 1969, 2391, 2394, 3328
GsaI CCCAGC 1 cut(s) 1145
GsuI CTGGAG 4 cut(s) 1350, 2118, 2446, 2958
HaeIII GGCC 6 cut(s) 700, 1062, 1155, 1594, 2028, 2954
HapII CCGG 3 cut(s) 2184, 2312, 3254
HgaI GACGC 2 cut(s) 193, 2588
HhaI GCGC 2 cut(s) 372, 1162
Hin1I GRCGYC 1 cut(s) 204
Hin6I GCGC 2 cut(s) 370, 1160
HinP1I GCGC 2 cut(s) 370, 1160
HincII GTYRAC 5 cut(s) 174, 360, 794, 1500, 1688
HindII GTYRAC 5 cut(s) 174, 360, 794, 1500, 1688
HindIII AAGCTT 2 cut(s) 1448, 2059
HpaI GTTAAC 1 cut(s) 1500
HpaII CCGG 3 cut(s) 2184, 2312, 3254
HphI GGTGA 9 cut(s) 85, 127, 154, 610, 1190, 2621, 3023, 3243, 3356
Hpy99I CGWCG 1 cut(s) 3355
HpyAV CCTTC 8 cut(s) 589, 822, 1234, 1471, 1755, 2018, 2813, 3051
HpyCH4III ACNGT 4 cut(s) 332, 423, 2090, 2231
HpyCH4IV ACGT 3 cut(s) 590, 1264, 1561
HpyF10VI GCNNNNNNNGC 4 cut(s) 116, 1299, 2888, 3242
HpySE526I ACGT 3 cut(s) 590, 1264, 1561
Hsp92I GRCGYC 1 cut(s) 204
HspAI GCGC 2 cut(s) 370, 1160
KpnI GGTACC 1 cut(s) 345
Ksp22I TGATCA 1 cut(s) 600
KspAI GTTAAC 1 cut(s) 1500
LguI GCTCTTC 2 cut(s) 117, 525
LmnI GCTCC 4 cut(s) 1044, 2454, 2709, 2977
Lsp1109I GCAGC 8 cut(s) 44, 83, 484, 1521, 1980, 2402, 2405, 3314
LweI GCATC 6 cut(s) 1487, 1778, 2255, 2795, 3121, 3142
MaeII ACGT 3 cut(s) 590, 1264, 1561
MaeIII GTNAC 7 cut(s) 10, 140, 1265, 1520, 1703, 2998, 3364
MbiI CCGCTC 1 cut(s) 1590
MfeI CAATTG 3 cut(s) 166, 1583, 2958
MflI RGATCY 2 cut(s) 2316, 3075
MhlI GDGCHC 4 cut(s) 220, 272, 1326, 2451
MlsI TGGCCA 2 cut(s) 1062, 2954
MluNI TGGCCA 2 cut(s) 1062, 2954
MlyI GAGTC 4 cut(s) 240, 355, 547, 2929
MmeI TCCRAC 3 cut(s) 2204, 2553, 2745
Mox20I TGGCCA 2 cut(s) 1062, 2954
MroXI GAANNNNTTC 1 cut(s) 2434
MscI TGGCCA 2 cut(s) 1062, 2954
MslI CAYNNNNRTG 2 cut(s) 1203, 2814
Msp20I TGGCCA 2 cut(s) 1062, 2954
MspA1I CMGCKG 1 cut(s) 497
MspI CCGG 3 cut(s) 2184, 2312, 3254
MspR9I CCNGG 4 cut(s) 26, 338, 1571, 2313
MssI GTTTAAAC 1 cut(s) 1566
MunI CAATTG 3 cut(s) 166, 1583, 2958
Mva1269I GAATGC 1 cut(s) 2991
MvaI CCWGG 3 cut(s) 26, 338, 1571
MvnI CGCG 1 cut(s) 266
MwoI GCNNNNNNNGC 4 cut(s) 116, 1299, 2888, 3242
NciI CCSGG 1 cut(s) 2313
NdeI CATATG 1 cut(s) 1000
NheI GCTAGC 1 cut(s) 53
NlaIV GGNNCC 8 cut(s) 271, 343, 436, 581, 649, 991, 2711, 2973
NmuCI GTSAC 3 cut(s) 140, 1703, 2998
NspI RCATGY 2 cut(s) 2888, 3274
OliI CACNNNNGTG 1 cut(s) 1203
PagI TCATGA 1 cut(s) 3181
PceI AGGCCT 2 cut(s) 1155, 2028
PciI ACATGT 1 cut(s) 2884
PciSI GCTCTTC 2 cut(s) 117, 525
PcsI WCGNNNNNNNCGW 1 cut(s) 226
PctI GAATGC 1 cut(s) 2991
PdmI GAANNNNTTC 1 cut(s) 2434
PflMI CCANNNNNTGG 3 cut(s) 864, 2352, 2981
PkrI GCNGC 9 cut(s) 52, 59, 73, 499, 1511, 1970, 2392, 2395, 3329
PleI GAGTC 4 cut(s) 239, 355, 546, 2929
PmeI GTTTAAAC 1 cut(s) 1566
PpsI GAGTC 4 cut(s) 239, 355, 546, 2929
Ppu21I YACGTR 1 cut(s) 1265
PpuMI RGGWCCY 2 cut(s) 435, 989
PscI ACATGT 1 cut(s) 2884
PsiI TTATAA 1 cut(s) 615
Psp124BI GAGCTC 1 cut(s) 2451
Psp1406I AACGTT 1 cut(s) 590
Psp5II RGGWCCY 2 cut(s) 435, 989
Psp6I CCWGG 3 cut(s) 24, 336, 1569
PspFI CCCAGC 1 cut(s) 1141
PspGI CCWGG 3 cut(s) 24, 336, 1569
PspN4I GGNNCC 8 cut(s) 271, 343, 436, 581, 649, 991, 2711, 2973
PspPI GGNCC 7 cut(s) 435, 698, 845, 989, 1592, 1883, 2189
PspPPI RGGWCCY 2 cut(s) 435, 989
PsrI GAACNNNNNNTAC 2 cut(s) 236, 268
PstI CTGCAG 1 cut(s) 1511
PsuI RGATCY 2 cut(s) 2316, 3075
PvuII CAGCTG 1 cut(s) 497
RsaI GTAC 5 cut(s) 343, 1743, 2494, 2801, 2823
RsaNI GTAC 5 cut(s) 342, 1742, 2493, 2800, 2822
RseI CAYNNNNRTG 2 cut(s) 1203, 2814
SacI GAGCTC 1 cut(s) 2451
SapI GCTCTTC 2 cut(s) 117, 525
SatI GCNGC 9 cut(s) 51, 58, 72, 498, 1510, 1969, 2391, 2394, 3328
Sau96I GGNCC 7 cut(s) 435, 698, 845, 989, 1592, 1883, 2189
SchI GAGTC 4 cut(s) 240, 355, 547, 2929
ScrFI CCNGG 4 cut(s) 26, 338, 1571, 2313
SduI GDGCHC 4 cut(s) 220, 272, 1326, 2451
SfaNI GCATC 6 cut(s) 1487, 1778, 2255, 2795, 3121, 3142
SfcI CTRYAG 2 cut(s) 1507, 3282
SinI GGWCC 5 cut(s) 435, 845, 989, 1883, 2189
SmiMI CAYNNNNRTG 2 cut(s) 1203, 2814
SmlI CTYRAG 4 cut(s) 1513, 2135, 2415, 2714
SmoI CTYRAG 4 cut(s) 1513, 2135, 2415, 2714
SseBI AGGCCT 2 cut(s) 1155, 2028
SsiI CCGC 5 cut(s) 50, 266, 1414, 1590, 2187
SspI AATATT 2 cut(s) 528, 1378
SstI GAGCTC 1 cut(s) 2451
StuI AGGCCT 2 cut(s) 1155, 2028
StyD4I CCNGG 4 cut(s) 24, 336, 1569, 2311
StyI CCWWGG 3 cut(s) 1926, 2167, 2949
TaaI ACNGT 4 cut(s) 332, 423, 2090, 2231
TaiI ACGT 3 cut(s) 593, 1267, 1564
TaqI TCGA 2 cut(s) 229, 1454
TaqII GACCGA 1 cut(s) 117
TauI GCSGC 1 cut(s) 53
TscAI CASTG 5 cut(s) 145, 919, 1210, 1537, 3088
TseFI GTSAC 3 cut(s) 140, 1703, 2998
TseI GCWGC 8 cut(s) 57, 71, 497, 1509, 1968, 2390, 2393, 3327
Tsp45I GTSAC 3 cut(s) 140, 1703, 2998
TspDTI ATGAA 8 cut(s) 373, 448, 1273, 2427, 2490, 2615, 2795, 2832
TspGWI ACGGA 1 cut(s) 1031
TspRI CASTG 5 cut(s) 145, 919, 1210, 1537, 3088
Van91I CCANNNNNTGG 3 cut(s) 864, 2352, 2981
VneI GTGCAC 1 cut(s) 216
VpaK11BI GGWCC 5 cut(s) 435, 845, 989, 1883, 2189
XagI CCTNNNNNAGG 2 cut(s) 285, 1890
XbaI TCTAGA 1 cut(s) 2020
XceI RCATGY 2 cut(s) 2888, 3274
XcmI CCANNNNNNNNNTGG 2 cut(s) 861, 1827
XmiI GTMKAC 2 cut(s) 30, 1960
XmnI GAANNNNTTC 1 cut(s) 2434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.