ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 622 |
| AciI | CCGC | 1 cut(s) | 563 |
| AclWI | GGATC | 2 cut(s) | 947, 960 |
| AcuI | CTGAAG | 2 cut(s) | 603, 903 |
| AfaI | GTAC | 1 cut(s) | 811 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 259, 508, 652, 992 |
| AgsI | TTSAA | 4 cut(s) | 439, 448, 460, 536 |
| AjnI | CCWGG | 4 cut(s) | 501, 823, 967, 985 |
| AluBI | AGCT | 6 cut(s) | 65, 103, 452, 581, 599, 963 |
| AluI | AGCT | 6 cut(s) | 65, 103, 452, 581, 599, 963 |
| Alw21I | GWGCWC | 1 cut(s) | 730 |
| Alw26I | GTCTC | 1 cut(s) | 883 |
| AlwI | GGATC | 2 cut(s) | 947, 960 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 830, 974 |
| AoxI | GGCC | 4 cut(s) | 157, 227, 557, 970 |
| ApeKI | GCWGC | 2 cut(s) | 90, 408 |
| AspLEI | GCGC | 1 cut(s) | 35 |
| AspS9I | GGNCC | 5 cut(s) | 314, 557, 649, 821, 971 |
| AsuC2I | CCSGG | 2 cut(s) | 647, 653 |
| AsuHPI | GGTGA | 2 cut(s) | 344, 686 |
| AvaII | GGWCC | 3 cut(s) | 314, 649, 821 |
| BamHI | GGATCC | 1 cut(s) | 952 |
| Bbv12I | GWGCWC | 1 cut(s) | 730 |
| BbvCI | CCTCAGC | 1 cut(s) | 600 |
| BbvI | GCAGC | 2 cut(s) | 102, 395 |
| BccI | CCATC | 2 cut(s) | 364, 743 |
| BceAI | ACGGC | 3 cut(s) | 144, 414, 994 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 875, 909 |
| BciT130I | CCWGG | 4 cut(s) | 503, 825, 969, 987 |
| BclI | TGATCA | 1 cut(s) | 268 |
| BcnI | CCSGG | 2 cut(s) | 647, 653 |
| BcoDI | GTCTC | 1 cut(s) | 883 |
| BfaI | CTAG | 5 cut(s) | 153, 255, 882, 897, 960 |
| BfmI | CTRYAG | 1 cut(s) | 805 |
| BfoI | RGCGCY | 1 cut(s) | 36 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 978 |
| BisI | GCNGC | 2 cut(s) | 91, 409 |
| BlsI | GCNGC | 2 cut(s) | 92, 410 |
| BmcAI | AGTACT | 1 cut(s) | 811 |
| Bme1390I | CCNGG | 6 cut(s) | 503, 647, 653, 825, 969, 987 |
| Bme18I | GGWCC | 3 cut(s) | 314, 649, 821 |
| BmgT120I | GGNCC | 5 cut(s) | 314, 557, 649, 821, 971 |
| BmiI | GGNNCC | 2 cut(s) | 650, 954 |
| BmrFI | CCNGG | 6 cut(s) | 503, 647, 653, 825, 969, 987 |
| BmrI | ACTGGG | 1 cut(s) | 564 |
| BmsI | GCATC | 1 cut(s) | 900 |
| BmuI | ACTGGG | 1 cut(s) | 564 |
| BpmI | CTGGAG | 2 cut(s) | 524, 951 |
| Bpu10I | CCTNAGC | 1 cut(s) | 600 |
| BpuEI | CTTGAG | 2 cut(s) | 239, 629 |
| BpuMI | CCSGG | 2 cut(s) | 647, 653 |
| BsaJI | CCNNGG | 2 cut(s) | 160, 986 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 259, 508, 652, 992 |
| Bse1I | ACTGG | 3 cut(s) | 132, 316, 559 |
| Bse3DI | GCAATG | 1 cut(s) | 543 |
| BseBI | CCWGG | 4 cut(s) | 503, 825, 969, 987 |
| BseDI | CCNNGG | 2 cut(s) | 160, 986 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 259, 508, 652, 992 |
| BseMI | GCAATG | 1 cut(s) | 543 |
| BseMII | CTCAG | 2 cut(s) | 90, 591 |
| BseNI | ACTGG | 3 cut(s) | 132, 316, 559 |
| BseXI | GCAGC | 2 cut(s) | 102, 395 |
| BshFI | GGCC | 4 cut(s) | 159, 229, 559, 972 |
| BsiHKAI | GWGCWC | 1 cut(s) | 730 |
| BsiSI | CCGG | 2 cut(s) | 646, 652 |
| BslFI | GGGAC | 2 cut(s) | 26, 662 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 259, 508, 652, 992 |
| BsmAI | GTCTC | 1 cut(s) | 883 |
| BsmFI | GGGAC | 2 cut(s) | 26, 662 |
| BsmI | GAATGC | 1 cut(s) | 898 |
| BsnI | GGCC | 4 cut(s) | 159, 229, 559, 972 |
| Bsp1286I | GDGCHC | 1 cut(s) | 730 |
| Bsp143I | GATC | 4 cut(s) | 68, 268, 787, 952 |
| BspACI | CCGC | 1 cut(s) | 563 |
| BspANI | GGCC | 4 cut(s) | 159, 229, 559, 972 |
| BspCNI | CTCAG | 2 cut(s) | 91, 592 |
| BspHI | TCATGA | 2 cut(s) | 37, 364 |
| BspLI | GGNNCC | 2 cut(s) | 650, 954 |
| BspPI | GGATC | 2 cut(s) | 947, 960 |
| BsrDI | GCAATG | 1 cut(s) | 543 |
| BsrI | ACTGG | 3 cut(s) | 132, 316, 559 |
| BssECI | CCNNGG | 2 cut(s) | 160, 986 |
| BssMI | GATC | 4 cut(s) | 68, 268, 787, 952 |
| Bst2UI | CCWGG | 4 cut(s) | 503, 825, 969, 987 |
| BstC8I | GCNNGC | 2 cut(s) | 454, 561 |
| BstDEI | CTNAG | 4 cut(s) | 45, 99, 574, 600 |
| BstDSI | CCRYGG | 1 cut(s) | 160 |
| BstH2I | RGCGCY | 1 cut(s) | 36 |
| BstHHI | GCGC | 1 cut(s) | 35 |
| BstKTI | GATC | 4 cut(s) | 71, 271, 790, 955 |
| BstMAI | GTCTC | 1 cut(s) | 883 |
| BstMBI | GATC | 4 cut(s) | 68, 268, 787, 952 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 62, 449, 969, 978 |
| BstNI | CCWGG | 4 cut(s) | 503, 825, 969, 987 |
| BstSCI | CCNGG | 6 cut(s) | 501, 645, 651, 823, 967, 985 |
| BstSFI | CTRYAG | 1 cut(s) | 805 |
| BstV1I | GCAGC | 2 cut(s) | 102, 395 |
| BstX2I | RGATCY | 1 cut(s) | 952 |
| BstYI | RGATCY | 1 cut(s) | 952 |
| BsuRI | GGCC | 4 cut(s) | 159, 229, 559, 972 |
| BtgI | CCRYGG | 1 cut(s) | 160 |
| BtgZI | GCGATG | 1 cut(s) | 900 |
| Cac8I | GCNNGC | 2 cut(s) | 454, 561 |
| CaiI | CAGNNNCTG | 2 cut(s) | 830, 974 |
| CciI | TCATGA | 2 cut(s) | 37, 364 |
| CfoI | GCGC | 1 cut(s) | 35 |
| Cfr13I | GGNCC | 5 cut(s) | 314, 557, 649, 821, 971 |
| Csp6I | GTAC | 1 cut(s) | 810 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 323, 358, 825, 860 |
| CviAII | CATG | 7 cut(s) | 38, 75, 365, 415, 698, 723, 776 |
| CviQI | GTAC | 1 cut(s) | 810 |
| DdeI | CTNAG | 4 cut(s) | 45, 99, 574, 600 |
| DpnI | GATC | 4 cut(s) | 70, 270, 789, 954 |
| DpnII | GATC | 4 cut(s) | 68, 268, 787, 952 |
| Eco32I | GATATC | 1 cut(s) | 568 |
| Eco47I | GGWCC | 3 cut(s) | 314, 649, 821 |
| Eco57I | CTGAAG | 2 cut(s) | 603, 903 |
| EcoO109I | RGGNCCY | 1 cut(s) | 971 |
| EcoRII | CCWGG | 4 cut(s) | 501, 823, 967, 985 |
| EcoRV | GATATC | 1 cut(s) | 568 |
| FaeI | CATG | 7 cut(s) | 41, 78, 368, 418, 701, 726, 779 |
| FaqI | GGGAC | 2 cut(s) | 26, 662 |
| FatI | CATG | 7 cut(s) | 37, 74, 364, 414, 697, 722, 775 |
| FbaI | TGATCA | 1 cut(s) | 268 |
| FblI | GTMKAC | 1 cut(s) | 622 |
| Fnu4HI | GCNGC | 2 cut(s) | 91, 409 |
| Fsp4HI | GCNGC | 2 cut(s) | 91, 409 |
| FspBI | CTAG | 5 cut(s) | 153, 255, 882, 897, 960 |
| GlaI | GCGC | 1 cut(s) | 34 |
| GluI | GCNGC | 2 cut(s) | 91, 409 |
| GsuI | CTGGAG | 2 cut(s) | 524, 951 |
| HaeII | RGCGCY | 1 cut(s) | 36 |
| HaeIII | GGCC | 4 cut(s) | 159, 229, 559, 972 |
| HapII | CCGG | 2 cut(s) | 646, 652 |
| HhaI | GCGC | 1 cut(s) | 35 |
| Hin1II | CATG | 7 cut(s) | 41, 78, 368, 418, 701, 726, 779 |
| Hin6I | GCGC | 1 cut(s) | 33 |
| HinP1I | GCGC | 1 cut(s) | 33 |
| HincII | GTYRAC | 4 cut(s) | 309, 623, 757, 850 |
| HindII | GTYRAC | 4 cut(s) | 309, 623, 757, 850 |
| HindIII | AAGCTT | 1 cut(s) | 450 |
| HinfI | GANTC | 1 cut(s) | 301 |
| HpaI | GTTAAC | 1 cut(s) | 757 |
| HpaII | CCGG | 2 cut(s) | 646, 652 |
| HphI | GGTGA | 2 cut(s) | 344, 686 |
| Hpy166II | GTNNAC | 5 cut(s) | 164, 309, 623, 757, 850 |
| Hpy188I | TCNGA | 2 cut(s) | 268, 922 |
| Hpy188III | TCNNGA | 5 cut(s) | 38, 122, 153, 188, 365 |
| Hpy8I | GTNNAC | 5 cut(s) | 164, 309, 623, 757, 850 |
| Hpy99I | CGWCG | 2 cut(s) | 624, 936 |
| HpyCH4IV | ACGT | 1 cut(s) | 931 |
| HpyCH4V | TGCA | 4 cut(s) | 23, 493, 745, 858 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 62, 449, 969, 978 |
| HpyF3I | CTNAG | 4 cut(s) | 45, 99, 574, 600 |
| HpySE526I | ACGT | 1 cut(s) | 931 |
| Hsp92II | CATG | 7 cut(s) | 41, 78, 368, 418, 701, 726, 779 |
| HspAI | GCGC | 1 cut(s) | 33 |
| Ksp22I | TGATCA | 1 cut(s) | 268 |
| KspAI | GTTAAC | 1 cut(s) | 757 |
| Kzo9I | GATC | 4 cut(s) | 68, 268, 787, 952 |
| LmnI | GCTCC | 1 cut(s) | 838 |
| Lsp1109I | GCAGC | 2 cut(s) | 102, 395 |
| LweI | GCATC | 1 cut(s) | 900 |
| MaeI | CTAG | 5 cut(s) | 153, 255, 882, 897, 960 |
| MaeII | ACGT | 1 cut(s) | 931 |
| MaeIII | GTNAC | 3 cut(s) | 586, 641, 674 |
| MalI | GATC | 4 cut(s) | 70, 270, 789, 954 |
| MboI | GATC | 4 cut(s) | 68, 268, 787, 952 |
| MboII | GAAGA | 3 cut(s) | 63, 341, 678 |
| MfeI | CAATTG | 3 cut(s) | 6, 679, 837 |
| MflI | RGATCY | 1 cut(s) | 952 |
| MhlI | GDGCHC | 1 cut(s) | 730 |
| MnlI | CCTC | 7 cut(s) | 73, 149, 214, 595, 604, 622, 664 |
| MseI | TTAA | 4 cut(s) | 18, 657, 666, 756 |
| MslI | CAYNNNNRTG | 1 cut(s) | 702 |
| MspI | CCGG | 2 cut(s) | 646, 652 |
| MspR9I | CCNGG | 6 cut(s) | 503, 647, 653, 825, 969, 987 |
| MunI | CAATTG | 3 cut(s) | 6, 679, 837 |
| Mva1269I | GAATGC | 1 cut(s) | 898 |
| MvaI | CCWGG | 4 cut(s) | 503, 825, 969, 987 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 62, 449, 969, 978 |
| NciI | CCSGG | 2 cut(s) | 647, 653 |
| NdeII | GATC | 4 cut(s) | 68, 268, 787, 952 |
| NlaIII | CATG | 7 cut(s) | 41, 78, 368, 418, 701, 726, 779 |
| NlaIV | GGNNCC | 2 cut(s) | 650, 954 |
| NmeAIII | GCCGAG | 2 cut(s) | 9, 269 |
| NmuCI | GTSAC | 2 cut(s) | 641, 674 |
| PagI | TCATGA | 2 cut(s) | 37, 364 |
| PctI | GAATGC | 1 cut(s) | 898 |
| PfeI | GAWTC | 1 cut(s) | 301 |
| PkrI | GCNGC | 2 cut(s) | 92, 410 |
| Psp6I | CCWGG | 4 cut(s) | 501, 823, 967, 985 |
| PspGI | CCWGG | 4 cut(s) | 501, 823, 967, 985 |
| PspN4I | GGNNCC | 2 cut(s) | 650, 954 |
| PspPI | GGNCC | 5 cut(s) | 314, 557, 649, 821, 971 |
| PstNI | CAGNNNCTG | 2 cut(s) | 830, 974 |
| PsuI | RGATCY | 1 cut(s) | 952 |
| RsaI | GTAC | 1 cut(s) | 811 |
| RsaNI | GTAC | 1 cut(s) | 810 |
| RseI | CAYNNNNRTG | 1 cut(s) | 702 |
| SalI | GTCGAC | 1 cut(s) | 621 |
| SaqAI | TTAA | 4 cut(s) | 18, 657, 666, 756 |
| SatI | GCNGC | 2 cut(s) | 91, 409 |
| Sau3AI | GATC | 4 cut(s) | 68, 268, 787, 952 |
| Sau96I | GGNCC | 5 cut(s) | 314, 557, 649, 821, 971 |
| ScaI | AGTACT | 1 cut(s) | 811 |
| ScrFI | CCNGG | 6 cut(s) | 503, 647, 653, 825, 969, 987 |
| SduI | GDGCHC | 1 cut(s) | 730 |
| SfaNI | GCATC | 1 cut(s) | 900 |
| SfcI | CTRYAG | 1 cut(s) | 805 |
| SinI | GGWCC | 3 cut(s) | 314, 649, 821 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 702 |
| SmlI | CTYRAG | 2 cut(s) | 218, 608 |
| SmoI | CTYRAG | 2 cut(s) | 218, 608 |
| SsiI | CCGC | 1 cut(s) | 563 |
| SspI | AATATT | 1 cut(s) | 532 |
| SspMI | CTAG | 5 cut(s) | 153, 255, 882, 897, 960 |
| StyD4I | CCNGG | 6 cut(s) | 501, 645, 651, 823, 967, 985 |
| TaiI | ACGT | 1 cut(s) | 934 |
| TaqI | TCGA | 3 cut(s) | 67, 622, 908 |
| TatI | WGTACW | 1 cut(s) | 809 |
| TfiI | GAWTC | 1 cut(s) | 301 |
| Tru1I | TTAA | 4 cut(s) | 18, 657, 666, 756 |
| Tru9I | TTAA | 4 cut(s) | 18, 657, 666, 756 |
| TseFI | GTSAC | 2 cut(s) | 641, 674 |
| TseI | GCWGC | 2 cut(s) | 90, 408 |
| Tsp45I | GTSAC | 2 cut(s) | 641, 674 |
| TspDTI | ATGAA | 4 cut(s) | 54, 63, 353, 725 |
| TspGWI | ACGGA | 1 cut(s) | 945 |
| VpaK11BI | GGWCC | 3 cut(s) | 314, 649, 821 |
| XbaI | TCTAGA | 1 cut(s) | 152 |
| XmiI | GTMKAC | 1 cut(s) | 622 |
| XspI | CTAG | 5 cut(s) | 153, 255, 882, 897, 960 |
| ZrmI | AGTACT | 1 cut(s) | 811 |